|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:427925..429649 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01520.1 vs.
Match: EWM28212.1 (hypothetical protein Naga_100004g75 [Nannochloropsis gaditana]) HSP 1 Score: 424.9 bits (1091), Expect = 2.600e-115 Identity = 230/367 (62.67%), Postives = 279/367 (76.02%), Query Frame = 0
Query: 1 MPYVRSNWDGITQFNGGNKFELGQVHSLNEVKLARPLQAGPRGCFLHVTMENESCVSYLEMVVSAKAVELYVLKGGRGASGEYVHIGGLKGRPAVDHPFKYHYKFSAADLPEARIALLQLRLTPHAEDAKEVYVFRLSVLVGDANTRHKSNIVSSISSMQGPLAIEGQVRHAGTSGMRGTTTSMIALGGGERRGWSIQQQQQQQQQGQYRGGGVVATRNNANQVALVGSGGEGAVVAEALNDVMGKMLAVVSKKTKGYVGSTYKRTEDKIAERMRSMETKISGFEQVVGQSLERRLLDLEHVMATLNERIISEEERKEEVVGKGGKKKRTKGKEGKRRVRKGH----PGGVEESKGGEGGRAAGSQQ 364
MPYVRSNW+G+T+FNGG+KFE+G VHS NEVKLARPLQAGP+GCFLHVTME ++ VSY+EMV SA+ VE+YVLKGG GASGEY +GG +GRPAVDHP+KYHYKF+++DLP+ +AL+QLRLTPH EDA+EVY+FRLSVLVG+AN+RH+SNI I +Q L + G ++ SG T TSM+ + G R S Q QQGQY GVVATRNN NQV GSG EGAVVA+ALNDVMGKML VVS+KTKGYVGSTYK+TEDKI+ RM+S+E KISGFE+VVGQ+LERRLLDLEHVMATLNERI + + +G K+ ++ GKR + GGVEESK G + + +QQ
Sbjct: 1 MPYVRSNWEGLTKFNGGHKFEVGHVHSFNEVKLARPLQAGPKGCFLHVTMEKDARVSYMEMVTSAREVEMYVLKGGHGASGEYSKVGGQRGRPAVDHPYKYHYKFTSSDLPDVPVALVQLRLTPHEEDAREVYLFRLSVLVGEANSRHRSNISRGIGGLQDALTVSGNGKY--LSGHSSTNTSMVPMSTGRRNSSS-----QGPQQGQYGSSGVVATRNNENQVVPAGSGAEGAVVADALNDVMGKMLTVVSRKTKGYVGSTYKKTEDKISARMKSIEAKISGFEEVVGQNLERRLLDLEHVMATLNERI---SPKLSPLAPEGKKQGQSLAAPGKRDSDRSDSVNCEGGVEESKDGHAPQMSRNQQ 357
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01520.1 ID=NO05G01520.1|Name=NO05G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ACAGCACGTCAAACCCACCCCCCCTTTACCTCGGCCCAGTTCTGCTTGCA
CGGAACATCGAAAGACACGCTCTGCCTTCCATCCTTTCAGCCCACCCATA
GGAATCAAGCATGCCGTACGTGCGTTCCAACTGGGATGGGATCACGCAGT
TCAACGGGGGTAACAAGTTCGAGCTTGGCCAGGTCCACTCCCTAAACGAG
GTCAAGCTTGCTCGCCCCTTGCAGGCAGGCCCTCGGGGCTGTTTCCTCCA
CGTAACCATGGAAAACGAATCCTGTGTCTCCTATCTCGAAATGGTCGTCT
CGGCCAAAGCCGTTGAGCTCTACGTGCTCAAAGGCGGACGAGGCGCATCG
GGCGAGTATGTCCATATCGGGGGCCTCAAGGGTCGTCCCGCGGTCGACCA
TCCCTTCAAATACCACTACAAATTCAGCGCTGCTGACCTCCCTGAGGCAC
GTATAGCTCTCTTGCAGCTGCGGCTAACCCCGCATGCAGAGGATGCAAAG
GAAGTGTACGTGTTCCGTTTATCCGTTTTGGTGGGCGACGCAAATACGAG
GCATAAATCGAATATTGTCAGCAGCATAAGCTCGATGCAGGGGCCATTGG
CCATAGAGGGGCAGGTCAGGCATGCAGGCACCAGCGGAATGAGGGGCACC
ACCACAAGCATGATTGCTCTCGGAGGAGGGGAAAGGAGAGGGTGGTCCAT
ACAGCAGCAGCAGCAGCAGCAGCAGCAGGGGCAATATCGGGGAGGGGGGG
TGGTCGCGACGAGGAATAATGCGAATCAGGTGGCGCTGGTTGGGAGTGGC
GGGGAGGGAGCAGTGGTTGCAGAGGCCTTGAATGACGTGATGGGGAAGAT
GCTGGCGGTGGTGAGTAAGAAAACGAAAGGGTACGTTGGATCGACGTACA
AGAGGACAGAAGACAAAATCGCGGAGAGAATGAGGTCAATGGAGACCAAA
ATTTCGGGATTTGAGCAAGTGGTTGGTCAGAGCCTCGAGCGGCGGCTCTT
GGATCTAGAACACGTCATGGCTACCTTAAACGAACGGATCATTTCAGAAG
AGGAAAGAAAGGAGGAAGTGGTAGGAAAGGGAGGCAAAAAGAAGAGGACT
AAGGGGAAGGAGGGGAAGAGAAGAGTGCGGAAGGGGCATCCAGGAGGAGT
GGAGGAGAGTAAGGGTGGGGAGGGAGGGCGGGCGGCGGGAAGCCAGCAGC
GATAGCAATATTTTTCCACCTGATTTATATAAGCAAAGCATGTATTCAGG
ACCAACTAGACGGAGATTAGGTTTGTGTGATCAAGCAAGATTGTCTGGCA
GGGAGGGAAAATGTGAAAACGGAAAGTATAAGGGAATGGAGATAGTGAGG
GAACACAAGGACGTGCGAATAACACTCAAGCGCCGCGCCTTAACAAGCAC
AAAACTAAAATCAAATAGCTACATTTGTGTGTCT back to topprotein sequence of NO05G01520.1 >NO05G01520.1-protein ID=NO05G01520.1-protein|Name=NO05G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MPYVRSNWDGITQFNGGNKFELGQVHSLNEVKLARPLQAGPRGCFLHVTM
ENESCVSYLEMVVSAKAVELYVLKGGRGASGEYVHIGGLKGRPAVDHPFK
YHYKFSAADLPEARIALLQLRLTPHAEDAKEVYVFRLSVLVGDANTRHKS
NIVSSISSMQGPLAIEGQVRHAGTSGMRGTTTSMIALGGGERRGWSIQQQ
QQQQQQGQYRGGGVVATRNNANQVALVGSGGEGAVVAEALNDVMGKMLAV
VSKKTKGYVGSTYKRTEDKIAERMRSMETKISGFEQVVGQSLERRLLDLE
HVMATLNERIISEEERKEEVVGKGGKKKRTKGKEGKRRVRKGHPGGVEES
KGGEGGRAAGSQQR* back to topmRNA from alignment at chr5:427925..429649- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01520.1 ID=NO05G01520.1|Name=NO05G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr5:427925..429649- (Nannochloropsis oceanica)
ACAGCACGTCAAACCCACCCCCCCTTTACCTCGGCCCAGTTCTGCTTGCA
CGGAACATCGAAAGACACGCTCTGCCTTCCATCCTTTCAGCCCACCCATA
GGAATCAAGCATGCCGTACGTGCGTTCCAACTGGGATGGGATCACGCAGT
TCAACGGGGGTAACAAGTTCGAGCTTGGCCAGGTCCACTCCCTAAACGAG
GTCAAGCTTGCTCGCCCCTTGCAGGCAGGCCCTCGGGGCTGTTTCCTCCA
CGGTACGTAATTTGAGTGGCATTGGAAGTGTGTATATCAAGGAAGGGGTA
GGAGGCATGTGGCAATGAAAATGCGTGGATAGTTTACGAAAGTAGGTGTC
GAGGAGCTTGAAGGCAGCTCTGTGCATGCCGGCCCCTTACCCTCATACGA
GCCAAACCTCAAAAAACTCCAGACAGATTCGGAGGTTCCTGTTCCCATTT
TAATTTCATGCATCCACTCCCCGAGGCAAGACTCCATGCTCTCTTCCCTT
CAACTCACCGCCAATCACCTACCACCCTTCCACCAAAACTCAGTAACCAT
GGAAAACGAATCCTGTGTCTCCTATCTCGAAATGGTCGTCTCGGCCAAAG
CCGTTGAGCTCTACGTGCTCAAAGGCGGACGAGGCGCATCGGGCGAGTAT
GTCCATATCGGGGGCCTCAAGGGTCGTCCCGCGGTCGACCATCCCTTCAA
ATACCACTACAAATTCAGCGCTGCTGACCTCCCTGAGGCACGTATAGCTC
TCTTGCAGCTGCGGCTAACCCCGCATGCAGAGGATGCAAAGGAAGTGTAC
GTGTTCCGTTTATCCGTTTTGGTGGGCGACGCAAATACGAGGCATAAATC
GAATATTGTCAGCAGCATAAGCTCGATGCAGGGGCCATTGGCCATAGAGG
GGCAGGTCAGGCATGCAGGCACCAGCGGAATGAGGGGCACCACCACAAGC
ATGATTGCTCTCGGAGGAGGGGAAAGGAGAGGGTGGTCCATACAGCAGCA
GCAGCAGCAGCAGCAGCAGGGGCAATATCGGGGAGGGGGGGTGGTCGCGA
CGAGGAATAATGCGAATCAGGTGGCGCTGGTTGGGAGTGGCGGGGAGGGA
GCAGTGGTTGCAGAGGCCTTGAATGACGTGATGGGGAAGATGCTGGCGGT
GGTGAGTAAGAAAACGAAAGGGTACGTTGGATCGACGTACAAGAGGACAG
AAGACAAAATCGCGGAGAGAATGAGGTCAATGGAGACCAAAATTTCGGGA
TTTGAGCAAGTGGTTGGTCAGAGCCTCGAGCGGCGGCTCTTGGATCTAGA
ACACGTCATGGCTACCTTAAACGAACGGATCATTTCAGAAGAGGAAAGAA
AGGAGGAAGTGGTAGGAAAGGGAGGCAAAAAGAAGAGGACTAAGGGGAAG
GAGGGGAAGAGAAGAGTGCGGAAGGGGCATCCAGGAGGAGTGGAGGAGAG
TAAGGGTGGGGAGGGAGGGCGGGCGGCGGGAAGCCAGCAGCGATAGCAAT
ATTTTTCCACCTGATTTATATAAGCAAAGCATGTATTCAGGACCAACTAG
ACGGAGATTAGGTTTGTGTGATCAAGCAAGATTGTCTGGCAGGGAGGGAA
AATGTGAAAACGGAAAGTATAAGGGAATGGAGATAGTGAGGGAACACAAG
GACGTGCGAATAACACTCAAGCGCCGCGCCTTAACAAGCACAAAACTAAA
ATCAAATAGCTACATTTGTGTGTCT back to topCoding sequence (CDS) from alignment at chr5:427925..429649- >NO05G01520.1 ID=NO05G01520.1|Name=NO05G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr5:427925..429649- (Nannochloropsis oceanica)
ATGCCGTACGTGCGTTCCAACTGGGATGGGATCACGCAGTTCAACGGGGG
TAACAAGTTCGAGCTTGGCCAGGTCCACTCCCTAAACGAGGTCAAGCTTG
CTCGCCCCTTGCAGGCAGGCCCTCGGGGCTGTTTCCTCCACGTAACCATG
GAAAACGAATCCTGTGTCTCCTATCTCGAAATGGTCGTCTCGGCCAAAGC
CGTTGAGCTCTACGTGCTCAAAGGCGGACGAGGCGCATCGGGCGAGTATG
TCCATATCGGGGGCCTCAAGGGTCGTCCCGCGGTCGACCATCCCTTCAAA
TACCACTACAAATTCAGCGCTGCTGACCTCCCTGAGGCACGTATAGCTCT
CTTGCAGCTGCGGCTAACCCCGCATGCAGAGGATGCAAAGGAAGTGTACG
TGTTCCGTTTATCCGTTTTGGTGGGCGACGCAAATACGAGGCATAAATCG
AATATTGTCAGCAGCATAAGCTCGATGCAGGGGCCATTGGCCATAGAGGG
GCAGGTCAGGCATGCAGGCACCAGCGGAATGAGGGGCACCACCACAAGCA
TGATTGCTCTCGGAGGAGGGGAAAGGAGAGGGTGGTCCATACAGCAGCAG
CAGCAGCAGCAGCAGCAGGGGCAATATCGGGGAGGGGGGGTGGTCGCGAC
GAGGAATAATGCGAATCAGGTGGCGCTGGTTGGGAGTGGCGGGGAGGGAG
CAGTGGTTGCAGAGGCCTTGAATGACGTGATGGGGAAGATGCTGGCGGTG
GTGAGTAAGAAAACGAAAGGGTACGTTGGATCGACGTACAAGAGGACAGA
AGACAAAATCGCGGAGAGAATGAGGTCAATGGAGACCAAAATTTCGGGAT
TTGAGCAAGTGGTTGGTCAGAGCCTCGAGCGGCGGCTCTTGGATCTAGAA
CACGTCATGGCTACCTTAAACGAACGGATCATTTCAGAAGAGGAAAGAAA
GGAGGAAGTGGTAGGAAAGGGAGGCAAAAAGAAGAGGACTAAGGGGAAGG
AGGGGAAGAGAAGAGTGCGGAAGGGGCATCCAGGAGGAGTGGAGGAGAGT
AAGGGTGGGGAGGGAGGGCGGGCGGCGGGAAGCCAGCAGCGATAG back to top
|