NO05G01420, NO05G01420 (gene) Nannochloropsis oceanica

Overview
NameNO05G01420
Unique NameNO05G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr5:402931..403326 -

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Properties
Property NameValue
DescriptionUPF0394 membrane protein PD_1893
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:402931..403326 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: EWM28165.1 (protein of unknown function DUF4341 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.100e-42
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFA-DKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLE 126
            MS   KV++FL+ R PGWDPSL++VLGAAVGLLTPFSLY+LSHQ  A+GDPSVK++   KGPLA S++EKVDW+L+VGEA+FG GWG+ G+CPGPALVLLAQG RKV   F P+YV GYL    LE
Sbjct:  223 MSQSLKVLDFLFLRFPGWDPSLVVVLGAAVGLLTPFSLYILSHQAVAYGDPSVKIYTPGKGPLATSQSEKVDWRLLVGEAIFGAGWGITGICPGPALVLLAQGHRKVALLFWPMYVGGYLLEEALE 348
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_017453527.1 (membrane protein [Herbaspirillum rubrisubalbicans])

HSP 1 Score: 84.0 bits (206), Expect = 3.900e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPL 114
            M+  AKV+ FL      WDPSL LV+  A+G+  P   +    Q S  G           PL +  A  +D +LV+G  +FG+GWGM G+CPGPALVLL  G  K + F + +
Sbjct:   25 MANPAKVLGFL-DLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSLLG----------APLQLPSASGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLAM 126
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_044529984.1 (membrane protein [Herbaspirillum sp. B65])

HSP 1 Score: 84.0 bits (206), Expect = 3.900e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPL 114
            M+  AKV+ FL      WDPSL LV+  A+G+  P   +    Q S  G           PL +  A  +D +LV+G  +FG+GWGM G+CPGPALVLL  G  K + F + +
Sbjct:   25 MANPAKVLGFL-DLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSLLG----------APLQLPSASGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLAM 126
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_028763142.1 (YeeE/YedE family protein [Shewanella colwelliana])

HSP 1 Score: 83.6 bits (205), Expect = 5.100e-13
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 0 
Query:    5 AKVVNFLYPRVPG---WDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLE 126
            AKV++FL   +     WDPSL+LV+ +A+ +  P  L V+  +  A   P   +F     L   +   +D  LV+G A+FG+GWG++G+CPGPA+V LAQ D  ++ F   + V G+LG   ++
Sbjct:   26 AKVISFLDVSLLSSGQWDPSLMLVMSSALAVYLPVYLMVVKPRALAQQGP---VFESHYHLPTKRV--IDAPLVIGAALFGLGWGLVGICPGPAIVNLAQFDLSIMLFVTAMIVGGFLGRQLMD 144
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_058895668.1 (hypothetical protein [Herbaspirillum rubrisubalbicans] >ALU89693.1 transmembrane protein [Herbaspirillum rubrisubalbicans M1])

HSP 1 Score: 83.6 bits (205), Expect = 5.100e-13
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPL 114
            M+  AKV+ FL      WDPSL LV+  A+G+  P   +    Q S  G           PL +  A  +D +LV+G  +FG+GWGM G+CPGPALVLL  G  K + F + +
Sbjct:   25 MANPAKVLGFL-DLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSLLG----------APLQLPSATGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLAM 126
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_034313374.1 (membrane protein [Herbaspirillum sp. B501])

HSP 1 Score: 82.8 bits (203), Expect = 8.700e-13
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPL 114
            M+  AKV+ FL      WDPSL LV+  A+G+  P   +    Q S  G           PL +  A  +D  LV+G  +FG+GWGM G+CPGPALVLL  G  K + F + +
Sbjct:   25 MANPAKVLGFL-DLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSLLG----------APLQLPSASGIDRPLVLGSLLFGVGWGMAGICPGPALVLLGMGSLKGLAFVLAM 126
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_069671671.1 (YeeE/YedE family protein [Shewanella colwelliana] >OEG73112.1 YeeE/YedE family protein [Shewanella colwelliana])

HSP 1 Score: 82.8 bits (203), Expect = 8.700e-13
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 0 
Query:    5 AKVVNFLYPRVPG---WDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLE 126
            AKV++FL   +     WDPSL+LV+ +A+ +  P  L V+  +  A   P   +F     L   +   +D  LV+G A+FG+GWG++G+CPGPA+V LAQ D  ++ F   + V G+LG   ++
Sbjct:   26 AKVISFLNLSLLSSGQWDPSLMLVMSSALAVYLPVYLMVVKPRALAKQGP---VFESHYHLPTKRV--IDAPLVIGAALFGLGWGLVGICPGPAIVNLAQFDFSIMLFVTAMIVGGFLGRQLMD 144
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_038883130.1 (YeeE/YedE family protein [Vibrio rotiferianus] >PIB12422.1 hypothetical protein B853_22461 [Vibrio rotiferianus CAIM 577 = LMG 21460])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLEG 127
            M+  AKV+ FL      WDPSL  V+G A+ +  P   Y+L  +P      S  +F D+     SKA  +D KLVVG A+FGIGWG++G+CPGPA+  L  G+ +V+ F   + V  +     + G
Sbjct:   26 MADPAKVIGFL-DITGAWDPSLAFVMGGALAVFVP--AYLLLIKPR-----SESVFGDEIICPTSKA--IDKKLVVGAALFGIGWGLLGVCPGPAVASLFTGNTQVLLFIAAMLVGSFTAKRMVRG 141
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_061789830.1 (hypothetical protein [Herbaspirillum rubrisubalbicans])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPL 114
            M+  AKV+ FL      WDPSL LV+  A+G+  P   +    Q S  G           PL +  A  +D +LV+G  +FG+GWGM G+CPGPALVLL  G  + + F + +
Sbjct:   25 MANPAKVLGFL-DLAGAWDPSLALVMAGAIGIGVPAFAWARKRQQSLLG----------APLQLPSATGIDRRLVLGSLLFGVGWGMAGICPGPALVLLGMGSLRGLAFVLAM 126
[Close]
BLAST of NO05G01420 vs. NCBI_GenBank
Match: WP_039473926.1 (YeeE/YedE family protein [Vibrio sinaloensis] >KHT51673.1 transporter [Vibrio sinaloensis])

HSP 1 Score: 81.6 bits (200), Expect = 1.900e-12
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPG-WDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLEGKKKTK 132
            M+  AKVV FL   V G WDPSL  V+G A+ +  P   +V+  +P     P V      G   ++K +K+D +LV G  VFG+GWG+ G+CPGPA+  LA G+  V  FF  + +VG  G + L   K ++
Sbjct:   26 MADPAKVVGFL--DVAGQWDPSLAFVMGGALLVFMPAYFFVIKPRPR----PVV-----AGEFCLAKKDKIDQRLVSGAVVFGLGWGLAGICPGPAMSSLALGNMGVWLFFASM-MVGLGGTNLLICMKNSR 145
The following BLAST results are available for this feature:
BLAST of NO05G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28165.11.100e-4268.25protein of unknown function DUF4341 [Nannochlorops... [more]
WP_017453527.13.900e-1339.82membrane protein [Herbaspirillum rubrisubalbicans][more]
WP_044529984.13.900e-1339.82membrane protein [Herbaspirillum sp. B65][more]
WP_028763142.15.100e-1337.10YeeE/YedE family protein [Shewanella colwelliana][more]
WP_058895668.15.100e-1339.82hypothetical protein [Herbaspirillum rubrisubalbic... [more]
WP_034313374.18.700e-1339.82membrane protein [Herbaspirillum sp. B501][more]
WP_069671671.18.700e-1337.10YeeE/YedE family protein [Shewanella colwelliana] ... [more]
WP_038883130.11.100e-1238.89YeeE/YedE family protein [Vibrio rotiferianus] >PI... [more]
WP_061789830.11.100e-1238.94hypothetical protein [Herbaspirillum rubrisubalbic... [more]
WP_039473926.11.900e-1239.39YeeE/YedE family protein [Vibrio sinaloensis] >KHT... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003728NSK003728Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01420.1NO05G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583855gene_2931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01420.1NO05G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01420 ID=NO05G01420|Name=NO05G01420|organism=Nannochloropsis oceanica|type=gene|length=396bp
ATGTCACTTCAAGCCAAGGTAGTCAACTTCCTTTACCCCCGCGTCCCAGG
GTGGGACCCCTCCCTCCTCCTCGTCCTTGGAGCTGCAGTTGGTCTGCTAA
CTCCTTTCTCGCTCTACGTACTGTCACACCAACCGTCCGCATGGGGCGAT
CCTTCGGTCAAATTGTTTGCCGACAAGGGGCCCTTAGCGGTGAGTAAAGC
AGAAAAAGTCGACTGGAAGCTTGTGGTGGGTGAGGCCGTGTTTGGGATCG
GGTGGGGAATGATTGGGCTGTGCCCCGGGCCAGCGTTGGTGTTGCTGGCG
CAGGGGGATAGGAAGGTGGTGTGTTTTTTCATGCCCTTGTATGTGGTGGG
CTATCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGA
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protein sequence of NO05G01420.1

>NO05G01420.1-protein ID=NO05G01420.1-protein|Name=NO05G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGD
PSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLA
QGDRKVVCFFMPLYVVGYLGASQLEGKKKTK*
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Synonyms
Publications