NO05G01420.1, NO05G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01420.1
Unique NameNO05G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr5:402931..403326 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:402931..403326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01420.1 vs.
Match: EWM28165.1 (protein of unknown function DUF4341 [Nannochloropsis gaditana])

HSP 1 Score: 182.2 bits (461), Expect = 1.100e-42
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 0 
Query:    1 MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGDPSVKLFAD-KGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLE 126
            MS   KV++FL+ R PGWDPSL++VLGAAVGLLTPFSLY+LSHQ  A+GDPSVK++   KGPLA S++EKVDW+L+VGEA+FG GWG+ G+CPGPALVLLAQG RKV   F P+YV GYL    LE
Sbjct:  223 MSQSLKVLDFLFLRFPGWDPSLVVVLGAAVGLLTPFSLYILSHQAVAYGDPSVKIYTPGKGPLATSQSEKVDWRLLVGEAIFGAGWGITGICPGPALVLLAQGHRKVALLFWPMYVGGYLLEEALE 348
The following BLAST results are available for this feature:
BLAST of NO05G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28165.11.100e-4268.25protein of unknown function DUF4341 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01420NO05G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01420.1NO05G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01420.1.cds1NO05G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01420.1 ID=NO05G01420.1|Name=NO05G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGTCACTTCAAGCCAAGGTAGTCAACTTCCTTTACCCCCGCGTCCCAGG
GTGGGACCCCTCCCTCCTCCTCGTCCTTGGAGCTGCAGTTGGTCTGCTAA
CTCCTTTCTCGCTCTACGTACTGTCACACCAACCGTCCGCATGGGGCGAT
CCTTCGGTCAAATTGTTTGCCGACAAGGGGCCCTTAGCGGTGAGTAAAGC
AGAAAAAGTCGACTGGAAGCTTGTGGTGGGTGAGGCCGTGTTTGGGATCG
GGTGGGGAATGATTGGGCTGTGCCCCGGGCCAGCGTTGGTGTTGCTGGCG
CAGGGGGATAGGAAGGTGGTGTGTTTTTTCATGCCCTTGTATGTGGTGGG
CTATCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGA
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protein sequence of NO05G01420.1

>NO05G01420.1-protein ID=NO05G01420.1-protein|Name=NO05G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTPFSLYVLSHQPSAWGD
PSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGWGMIGLCPGPALVLLA
QGDRKVVCFFMPLYVVGYLGASQLEGKKKTK*
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mRNA from alignment at chr5:402931..403326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01420.1 ID=NO05G01420.1|Name=NO05G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp|location=Sequence derived from alignment at chr5:402931..403326- (Nannochloropsis oceanica)
ATGTCACTTCAAGCCAAGGTAGTCAACTTCCTTTACCCCCGCGTCCCAGG
GTGGGACCCCTCCCTCCTCCTCGTCCTTGGAGCTGCAGTTGGTCTGCTAA
CTCCTTTCTCGCTCTACGTACTGTCACACCAACCGTCCGCATGGGGCGAT
CCTTCGGTCAAATTGTTTGCCGACAAGGGGCCCTTAGCGGTGAGTAAAGC
AGAAAAAGTCGACTGGAAGCTTGTGGTGGGTGAGGCCGTGTTTGGGATCG
GGTGGGGAATGATTGGGCTGTGCCCCGGGCCAGCGTTGGTGTTGCTGGCG
CAGGGGGATAGGAAGGTGGTGTGTTTTTTCATGCCCTTGTATGTGGTGGG
CTATCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGA
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Coding sequence (CDS) from alignment at chr5:402931..403326-

>NO05G01420.1 ID=NO05G01420.1|Name=NO05G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr5:402931..403326- (Nannochloropsis oceanica)
ATGTCACTTCAAGCCAAGGTAGTCAACTTCCTTTACCCCCGCGTCCCAGG
GTGGGACCCCTCCCTCCTCCTCGTCCTTGGAGCTGCAGTTGGTCTGCTAA
CTCCTTTCTCGCTCTACGTACTGTCACACCAACCGTCCGCATGGGGCGAT
CCTTCGGTCAAATTGTTTGCCGACAAGGGGCCCTTAGCGGTGAGTAAAGC
AGAAAAAGTCGACTGGAAGCTTGTGGTGGGTGAGGCCGTGTTTGGGATCG
GGTGGGGAATGATTGGGCTGTGCCCCGGGCCAGCGTTGGTGTTGCTGGCG
CAGGGGGATAGGAAGGTGGTGTGTTTTTTCATGCCCTTGTATGTGGTGGG
CTATCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGA
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Synonyms
Publications