NO05G01310, NO05G01310 (gene) Nannochloropsis oceanica

Overview
NameNO05G01310
Unique NameNO05G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4107
Alignment locationchr5:373347..377453 -

Link to JBrowse

Properties
Property NameValue
DescriptionAtp binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:373347..377453 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G01310 vs. NCBI_GenBank
Match: EWM28211.1 (atp binding protein [Nannochloropsis gaditana])

HSP 1 Score: 955.7 bits (2469), Expect = 1.600e-274
Identity = 887/1204 (73.67%), Postives = 963/1204 (79.98%), Query Frame = 0 
Query:  186 EAEIDIGHVINLVRALANRQWQQAEESAALLCHSQLLDTVLSRMVVYAATQRNEPDLALEILGGMREKRIDVDAFMASLVAKAAATDRRWMPVIEVIRAQLSTNPGGSLTMPAVMKGRRHEGFTQALASTIERGKFYSSSFLVDALLQFRMVDLFTAKVAVKFYRFSRTPARGLPWIATARAIGLIPDADLDFEVGRMYKSLGMWREAVALLNEMVEKGRSVEDEHVGVVLSACHQAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPTYLHAAVGEARTHQTGLDLRFFATVINACAEANRTDEALAVLASVRSYGLVPNVVCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVDRTLSAFFQCWYQKGEYEEAWRRVGRVARWEEXXXXXXXXEIMGTFAAGGAASGKRSNIQ-------------PLLQPGLGTFADLMNVCARREDWEEVLRLHERMKDMGLPTTAMRAPHLVARAYAEMGRWEEARRFLKEGI-EGVA-------------STDIAGAPAAGAAAGHSTMAWGKAYGALLTMCSKRIEPTRALNLLEEMEMREIAPDAEAYHAVMDACAQSGMEGEVRTVFEKMRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXLRLMEDLEGLGLTPDMLCFNAAMEACREASLGERGKEGGRFRAAMRKWRDLEVMHTYNSEIAVLATRKGGFDDGASATALRYLKEMRDNGIPRDADSFNMALEACARAGDLTGVREVFAELQVERTAK-EGVEVKPDIFSYITMANALVGEGQGVEAMALLNYLVGLA---SXXXXXXXXXXXXXXXXXXXXXXXXXXNKEIKRGKGRVGPGKQSVSRTSKRIDKSFTSQTAP-PSLPTSIL--TSPLPPSS----ANVGIRIKTRWPAYYRFLWPRTAKTLSKTIITLASSGPPSQQATRCADIGRLLQFLRTHVPIFNTQAVAEQLVGRGMCSTEHIKTLTGDALAVRWRK 1352
            E E DIGHVI LVRALANRQW+QAEESAALLC S LLDTVLSRMVVYAATQRNEPDLALEILGGMREKRIDVDAFMASLVAKAAATDRRWMPV+EVIRAQLS+NPGG L MP   +GRRH GFTQALASTIERGKFYSSSFLVDALLQFRMVDLFTAKVA+KFYRFSRTPARGLPWI TARAIGLIPDADLDFEVGR+YKSLGMWREAVALL+EMVE+ R+VEDEHVGVVLSACHQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    YL AAVGEAR H+TGLDLRFFATVINACAE NRTDEALAVLASVRSYGL+PNVV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PVD T SAFFQ WY KGEY   W+ +  + RWE+          M        A  +R +                    G  T ADLM+VCARREDW EVL L  R+ DMGLP TA RAPHLV RAYAE+GRW EA++FL + + +GV+             ++D A    A   +   +++W + YGALLT+CSKRIEP RAL LL++ME +++APDAEAYHAVMDACAQ+GM+GEVR VFEK+R R XXXXXXXXXXXXXXXXXXXXXXXXXX  LM+DLEGLGLTPDMLCFNAAMEACREAS+ E     GR+R AMRKWRD+EVMHTYNSE+AVLATRKGG D  AS+TALRYL+EM+ NGIPRD DSFNMALEACAR G+L   R VF ELQ   T + +G   +PDIFSYIT+ANAL  +G+  EAMA LN++VGLA   +                          N E      R+G  K S SR    I  +  +   P PS P   L       PSS    ++  IR KTRWPAYYR LWP+T KTLSK I+ LA    P +QATRCADIG+LL+FL +HVPI NTQ VAEQLVG G+CST+HIKTLTG+AL +RWR+
Sbjct:  169 ETERDIGHVIKLVRALANRQWEQAEESAALLCRSPLLDTVLSRMVVYAATQRNEPDLALEILGGMREKRIDVDAFMASLVAKAAATDRRWMPVVEVIRAQLSSNPGGDLIMPGTPQGRRHGGFTQALASTIERGKFYSSSFLVDALLQFRMVDLFTAKVALKFYRFSRTPARGLPWITTARAIGLIPDADLDFEVGRVYKSLGMWREAVALLSEMVEQKRAVEDEHVGVVLSACHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYLEAAVGEARVHKTGLDLRFFATVINACAEGNRTDEALAVLASVRSYGLMPNVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDATWSAFFQSWYHKGEYGTPWKLIEELVRWEDEGGMDSNAAWMPRKVIVSDADQRRPSADGSRXXXXXXXXXXXXXXXGPRTLADLMHVCARREDWGEVLELQRRITDMGLPPTATRAPHLVVRAYAELGRWTEAQQFLCDCMHQGVSTESTQNYTSHDERASDQARQVPATENSRPFSVSWSRTYGALLTLCSKRIEPVRALALLKDMEDKQLAPDAEAYHAVMDACAQAGMKGEVRMVFEKLRARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMDDLEGLGLTPDMLCFNAAMEACREASMLETDPGEGRYRRAMRKWRDVEVMHTYNSEMAVLATRKGGQDGEASSTALRYLREMQANGIPRDTDSFNMALEACARGGNLQEARTVFEELQAAATEEAQGPSARPDIFSYITLANALAKDGRDSEAMAWLNHMVGLAVDEAKAVVGAAPNKTKGRTNAGRKAIQPSGNSE------RLGMNKSSTSRVGTNILLADETPALPSPSTPIGDLEEADGFTPSSLLHLSSASIRKKTRWPAYYRNLWPQTVKTLSKNILVLARCASPREQATRCADIGKLLEFLDSHVPILNTQVVAEQLVGMGICSTKHIKTLTGNALKMRWRE 1366
The following BLAST results are available for this feature:
BLAST of NO05G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28211.11.600e-27473.67atp binding protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003740NSK003740Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01310.1NO05G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669761gene_2923Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g54gene2314Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01310.1NO05G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01310 ID=NO05G01310|Name=NO05G01310|organism=Nannochloropsis oceanica|type=gene|length=4107bp
ATGACGAGCGACCTGACAAGTGCAACCTCAAGAGCATGCTACCCCTGGAC
AAGAAGGAGAGAAAGAGGAGGATTCCGAGGAGTAGCGACTTCAGAAGATT
ATCTTTCCAGTAAGCTGCTGCTTGCGCTCTTGTATCTAGCCGTCAGCACC
CAGGCCTTCCTCCTTCCCCGGGCTCTACCACCATGCCAACGCCCCCTTCT
CAACTTCGCCCTCGCCGCCACTAAAGAGGGCGCGGCGGCACCCTCATGGT
TTGGAGAGGACATGTGGAAAAGCAACGATGTCACAACCGCTGCTCGTACA
GAATTCGCACCATCGTCGCCCTCTTCTTCCGCCCCTCAATTCTCCACCTC
CCCTGGCCGTCGACGGAGCAGCGGCAAAGGTGGCAACAAGAAGGAATGGG
AAAGATCGGCACCTGAAGAGTTTCTGCTCATTCTGACGAGTTTACGCGCG
CACTATAGTGGCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGGGGA
GGAGATGGAAGAGGAGGAAGAGGAGGTGGCGAAACTCTCTGAAGACGATG
ACGGGGAAGCAGAAATAGACATCGGGCACGTCATCAACCTTGTCCGTGCT
CTGGCCAACCGTCAATGGCAGCAAGCGGAGGAGTCTGCCGCCTTGCTGTG
CCATAGCCAGTTGCTCGACACGGTGCTGTCACGTATGGTGGTTTATGCGG
CAACCCAAAGAAATGAACCTGATTTGGCCCTAGAAATCTTGGGGGGGATG
CGTGAGAAAAGGATAGATGTCGATGCATTCATGGCTTCATTAGTAGCAAA
AGCAGCAGCAACGGACCGGAGGTGGATGCCTGTCATAGAGGTGATAAGGG
CGCAGTTGTCTACGAATCCTGGGGGGTCATTGACCATGCCGGCGGTGATG
AAGGGGAGGAGACACGAGGGATTCACGCAGGCACTGGCCTCGACAATCGA
ACGGGGCAAGTTTTATTCGTCATCTTTTCTTGTCGATGCCTTGCTGCAAT
TTCGGATGGTGGACTTGTTCACGGCGAAAGTGGCCGTGAAATTTTATCGC
TTTAGTAGGACGCCTGCAAGGGGGCTGCCATGGATAGCCACAGCGCGGGC
GATTGGGCTGATACCTGATGCGGATTTGGATTTTGAAGTCGGAAGGATGT
ATAAATCTTTGGGGATGTGGAGGGAGGCGGTGGCGCTTTTGAATGAGATG
GTGGAGAAAGGGCGGAGCGTGGAGGATGAACATGTGGGGGTGGTGTTGAG
TGCATGTCACCAAGCGGGGGAATGGGGGGAGTGTATGGAAGTGCTGGAAC
GGATGCATGGGTGGGGCTTGAGGGTAGGGAGGGTTTCGTACCTCATTGTC
CTTCGTCTTTTACTAGAAAAAAGGAGACTAGATCAAGTTAGAACTGTACT
TGGCCAGATGCAGAAGCAGGGGACGCCGCTCGATGCGGAAACTGCGAGGT
TGGTACTGTTCACATTGGCCAAACGAGGGCCGGTTTATAGTAGCATGGAA
TTTTTGAAGTTGATGCCCGCGTGGGGAGTAGAGCCTGATTTGGTTACGTA
TACGGCGGTGTTAAGGGCGTGTGCGAGGTTTCAAGAACCGGATCGGGCAT
TGGAGGTGTTAAAAATAATGGAGGGGAAGGGGATGACGGTTGATGTTCTG
GCATGTGTGACTGTAATGGAAGCCTTGTCAGGGGCTTCGAGGTGGGATGA
GGCCTTCGGATTGTTTGATTCGTGTCGAGCAGGGGGACTACGACCGGATA
TCAAGTGTTGGACGCAGGTGTTGCATCAGGCAACGCAGGCGGGGAGGTGG
GATCTGTTCCCGACTTACCTACACGCAGCAGTTGGGGAGGCGAGGACGCA
TCAAACAGGTTTGGACTTACGGTTTTTTGCAACGGTAATTAATGCATGCG
CCGAAGCGAATCGAACGGATGAGGCATTGGCAGTGTTGGCAAGTGTGCGT
TCGTATGGTTTGGTCCCTAACGTGGTATGTTATTCAGCGGCGGCTAAATC
TTGTTTAGCAAGGAATAGATGGAGGGATGCCTTGGGACTGTTGGAGGAAG
CGAACGAGCAGGGAATTCCCACTGATGCCACAATGTATAGAACTGTTTTG
CGGTGTTGTTGGCAAGCAAGACAATGGCAGAGCGTTCTGAAATTGTACGG
AGAGATGTTGGAGAGGGGGCTAGAGGTCGACGGGCAAATGTACACGCAAC
TGATGGATGTGCTGGCGAGGGCAGGACAGGCAGAATTGGCGGCGGATCTG
TTGCAGGAAATGGTGGCCAACGGCGTGATACCCGTCGATAGGACTTTGAG
TGCATTTTTTCAGTGTTGGTATCAGAAGGGGGAATATGAGGAGGCTTGGC
GGAGGGTGGGGAGGGTGGCAAGGTGGGAGGAGGAGGACGAGGAGGAGGAA
GATTACGAGATAATGGGCACATTTGCCGCTGGTGGTGCTGCTAGTGGGAA
GAGGAGTAACATTCAACCGTTGTTGCAACCTGGCTTGGGCACCTTTGCTG
ATTTAATGAACGTGTGTGCGCGGAGGGAGGACTGGGAGGAGGTGCTTCGG
TTGCACGAGCGGATGAAAGATATGGGCTTGCCTACCACAGCGATGAGGGC
TCCGCATCTAGTGGCTAGGGCATACGCAGAAATGGGAAGGTGGGAAGAGG
CGAGGCGGTTTCTGAAGGAGGGCATAGAAGGGGTCGCGAGTACTGACATA
GCAGGAGCACCAGCAGCAGGAGCGGCAGCAGGGCATTCTACTATGGCGTG
GGGGAAGGCGTATGGGGCTTTGTTGACCATGTGTAGTAAGAGGATTGAGC
CTACCCGAGCCTTGAACTTACTGGAGGAGATGGAGATGAGGGAGATAGCA
CCTGATGCAGAGGCCTATCATGCTGTAATGGACGCGTGTGCGCAGTCAGG
GATGGAGGGGGAGGTACGGACGGTATTTGAAAAAATGAGGGGAAGGGGGG
ATATTATACCGAGTGTGGAGTCATTCACGATAATGTTGGAATTGTGTGCA
AGGGAGGGGGAGAAGGGGGAGGAGGCTTTAAGGTTGATGGAAGATTTGGA
AGGATTGGGTTTGACCCCTGACATGTTGTGTTTCAATGCGGCGATGGAGG
CGTGCCGGGAGGCCAGCTTGGGAGAGCGAGGAAAGGAGGGGGGCCGGTTC
AGGGCGGCGATGCGGAAGTGGAGGGATCTGGAGGTCATGCACACATATAA
TTCGGAAATCGCTGTCTTGGCAACTAGGAAGGGGGGATTTGACGATGGGG
CGTCGGCGACTGCCTTGAGATATTTGAAGGAAATGCGTGATAATGGAATT
CCGCGCGATGCGGATTCGTTCAATATGGCTTTGGAAGCCTGTGCGAGGGC
AGGAGATCTGACCGGGGTTCGGGAGGTGTTTGCCGAGTTGCAGGTCGAGA
GAACGGCGAAGGAAGGGGTTGAGGTCAAGCCGGACATTTTTTCGTACATC
ACTATGGCGAATGCGTTGGTTGGGGAGGGGCAGGGGGTGGAGGCGATGGC
TTTGTTGAATTATTTGGTGGGATTGGCGAGTGACGATGACGGTGCTGGAA
CCGTTGCTGCTGCTGCGGTGGGCTCAACAACGACAACGATGGCGGCAGCA
GGTGCTGCGAACAAAGAGATCAAACGAGGGAAAGGAAGAGTAGGACCTGG
GAAGCAATCGGTCTCGCGGACGTCAAAGCGCATTGACAAGAGTTTCACCT
CGCAAACAGCTCCGCCTTCTCTCCCTACTTCCATTCTCACCTCTCCATTA
CCACCATCATCAGCTAATGTGGGCATCCGTATAAAGACCCGCTGGCCCGC
CTATTATCGCTTTTTATGGCCCCGTACTGCGAAGACACTCAGCAAAACCA
TCATCACCCTCGCGAGCTCCGGTCCTCCATCCCAACAAGCAACTCGCTGC
GCAGATATTGGACGATTACTACAGTTTTTGAGAACGCACGTCCCTATATT
TAATACGCAGGCCGTGGCTGAACAGTTGGTGGGGAGAGGTATGTGCTCGA
CGGAGCATATCAAGACACTGACGGGCGATGCGCTGGCGGTGAGATGGAGG
AAGGGTGCGGAGCAGGCGGAGGGAAACAATAGGAATGCAGGTTGGGGGCT
TTTCTGA
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protein sequence of NO05G01310.1

>NO05G01310.1-protein ID=NO05G01310.1-protein|Name=NO05G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1369bp
MTSDLTSATSRACYPWTRRRERGGFRGVATSEDYLSSKLLLALLYLAVST
QAFLLPRALPPCQRPLLNFALAATKEGAAAPSWFGEDMWKSNDVTTAART
EFAPSSPSSSAPQFSTSPGRRRSSGKGGNKKEWERSAPEEFLLILTSLRA
HYSGQQQQQQQQQQQGEEMEEEEEEVAKLSEDDDGEAEIDIGHVINLVRA
LANRQWQQAEESAALLCHSQLLDTVLSRMVVYAATQRNEPDLALEILGGM
REKRIDVDAFMASLVAKAAATDRRWMPVIEVIRAQLSTNPGGSLTMPAVM
KGRRHEGFTQALASTIERGKFYSSSFLVDALLQFRMVDLFTAKVAVKFYR
FSRTPARGLPWIATARAIGLIPDADLDFEVGRMYKSLGMWREAVALLNEM
VEKGRSVEDEHVGVVLSACHQAGEWGECMEVLERMHGWGLRVGRVSYLIV
LRLLLEKRRLDQVRTVLGQMQKQGTPLDAETARLVLFTLAKRGPVYSSME
FLKLMPAWGVEPDLVTYTAVLRACARFQEPDRALEVLKIMEGKGMTVDVL
ACVTVMEALSGASRWDEAFGLFDSCRAGGLRPDIKCWTQVLHQATQAGRW
DLFPTYLHAAVGEARTHQTGLDLRFFATVINACAEANRTDEALAVLASVR
SYGLVPNVVCYSAAAKSCLARNRWRDALGLLEEANEQGIPTDATMYRTVL
RCCWQARQWQSVLKLYGEMLERGLEVDGQMYTQLMDVLARAGQAELAADL
LQEMVANGVIPVDRTLSAFFQCWYQKGEYEEAWRRVGRVARWEEEDEEEE
DYEIMGTFAAGGAASGKRSNIQPLLQPGLGTFADLMNVCARREDWEEVLR
LHERMKDMGLPTTAMRAPHLVARAYAEMGRWEEARRFLKEGIEGVASTDI
AGAPAAGAAAGHSTMAWGKAYGALLTMCSKRIEPTRALNLLEEMEMREIA
PDAEAYHAVMDACAQSGMEGEVRTVFEKMRGRGDIIPSVESFTIMLELCA
REGEKGEEALRLMEDLEGLGLTPDMLCFNAAMEACREASLGERGKEGGRF
RAAMRKWRDLEVMHTYNSEIAVLATRKGGFDDGASATALRYLKEMRDNGI
PRDADSFNMALEACARAGDLTGVREVFAELQVERTAKEGVEVKPDIFSYI
TMANALVGEGQGVEAMALLNYLVGLASDDDGAGTVAAAAVGSTTTTMAAA
GAANKEIKRGKGRVGPGKQSVSRTSKRIDKSFTSQTAPPSLPTSILTSPL
PPSSANVGIRIKTRWPAYYRFLWPRTAKTLSKTIITLASSGPPSQQATRC
ADIGRLLQFLRTHVPIFNTQAVAEQLVGRGMCSTEHIKTLTGDALAVRWR
KGAEQAEGNNRNAGWGLF*
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Synonyms
Publications