NO05G01250, NO05G01250 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01250
Unique Name	NO05G01250
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1887
Alignment location	chr5:356375..358261 -

Link to JBrowse

Properties


Property Name	Value
Description	tRNA synthetase beta subunit family protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:356375..358261 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000287	magnesium ion binding
GO:0005524	ATP binding
GO:0003723	RNA binding
GO:0004826	phenylalanine-tRNA ligase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006432	phenylalanyl-tRNA aminoacylation

Vocabulary: **INTERPRO**
Term	Definition
IPR009061	DNA-bd_dom_put
IPR005147	tRNA_synthase_B5-dom
IPR005146	B3/B4_tRNA-bd

Homology

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: EWM28153.1 (phenylalanyl-trna synthetase beta chain [Nannochloropsis gaditana])

HSP 1 Score: 1052.0 bits (2719), Expect = 7.500e-304
Identity = 514/628 (81.85%), Postives = 572/628 (91.08%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPTISLVR+DLF ALGK+YTDDEFQD+CF FGIELDEITTE ELASK+ + SKGK G  GGAV+YK+DVPANRYDILCMEGL+RALRIFLEL++AP YRK+EPT NGG   R  M+VEASTA++RP V CAILRD+ FDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTL+GPF YTAA P SIQFSPLTS+DG++FN KELLDFYRTDESAKHL PYTDIIY+AP YPVLYDS+GTVLSLPP+INGRHSRITL +RNVFIECTATD+TKANIVLDT+VTMFSQHCA+PFTVEPVD++YEG    VETTPLLS+R+V AKM+++E +VGR+LG ELVC LC KMQLGPASY   TD+VVVTVPPTRSDVLHAVDVIEDVAIA+GYNNLPIKVP TLTVG PLPINAF+DLLRDE++RAGYLEVLTHGLCSRAENF KLRRPE  AVSLSNPANEEYEIVRTTLLPGLLKVLQHNRA QVK+GLR FEISDVVLRD+ TDVGA+N+RRLVAS T M AGFESIHGLVDRVMLL+Q+GPTEAYAGNSMRGEERMAVLK+ +QYYI PS++P +FPGRCADV+LV+ G + KP K+GTFGVLHPEVLK+YDIPFPTS LE+DLEPL+
Sbjct:    1 MPTISLVRDDLFNALGKSYTDDEFQDVCFAFGIELDEITTEGELASKD-AGSKGKCGPDGGAVVYKVDVPANRYDILCMEGLTRALRIFLELDKAPSYRKVEPTDNGGT--RTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNAKELLDFYRTDESAKHLSPYTDIIYEAPRYPVLYDSRGTVLSLPPVINGRHSRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQHCARPFTVEPVDVVYEGPELSVETTPLLSTRKVAAKMSEIEGLVGRDLGPELVCQLCNKMQLGPASYHAETDTVVVTVPPTRSDVLHAVDVIEDVAIAFGYNNLPIKVPGTLTVGAPLPINAFSDLLRDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTDVGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQIGPTEAYAGNSMRGEERMAVLKDKIQYYIVPSDDPAYFPGRCADVILVEDGKKSKPLKVGTFGVLHPEVLKAYDIPFPTSMLEIDLEPLI 625

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: CBN76985.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 758.1 bits (1956), Expect = 2.200e-215
Identity = 384/642 (59.81%), Postives = 476/642 (74.14%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGA---VIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASY-----DRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKK-----GNEGKPE-KIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+ + R+DLF ALG  YT+ EF +LCF+FGIELDE+T+EA    K+ S   G+ G  G A   V+YKID+PANRYD+LC+EGL+RALR+FL  E++PV+R +EP   GG G R  MTV +  A IRP VVCA+LR V F+   YKSF+DLQ+ LH+NICRRRTLVAIG HDL+T+KGPF Y A  P+ I F PLT  D   FN K LLD Y TD S KHLKPYT IIY++ +YPV+ D+ G VLSLPP+ING  SRI L + +VFIECTATD TKANIVLDTMVTMFS++C   F+VEPVD+ Y+  +  V+TTPLLS+R   A + ++ S++G E+  E +C LC KMQLGPA       +     + VTVPPTRSD+LH VDV+EDVAIAYG+N +P  +PATLTVG   P+N F DLLR+E+SRAGY E+LTHGLCSRAENF  LRR E P VSLSNP + EYE+VRT+LLPG LK  Q NRA+ VK+G+R+FEISDVV+RD+  D GARN RRLVA+Y   TAGFE IHGLVDR+M L+QV P+E Y+GN  R        +E M+Y I P + PTFFPGRCADV+L+ K     G+ G  E ++G+FG+LHPEVLK+YD+  P+SA+E+DLEPLM
Sbjct:    1 MPTLGVNRDDLFEALGHVYTEKEFDELCFEFGIELDEVTSEAIELEKQ-SQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPA--GGAGARQKMTVGSGAAKIRPYVVCAVLRGVTFNSKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDNSGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMGEEEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNCRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGNDPRARVG-GPWRENMRYRIDPVDRPTFFPGRCADVLLMVKDTEEGGSAGWREIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 638

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: XP_002180471.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47879.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 688.7 bits (1776), Expect = 1.700e-194
Identity = 366/645 (56.74%), Postives = 459/645 (71.16%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS--SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTV-EASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVET--TPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDE-----ETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRG-EERMAVLKEGMQYYI------QPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+S+ ++ LF  LG+TYTD EF +LCF+FG+ELDE+T+E E A K  +   SK +  ++  A++YKIDVPANRYD+LC+EGLSRAL+IFL   +AP YR+++         R+TMTV +A T  IRP VVCAILR+V FD   Y SFIDLQ+ LHRN+CR+RTLVAIGTHD+D ++GPF Y A  PT I F PLT  D + +   ELL+FY T+ +AKHLKPY  II D+PLYPV+ DS  TVLSLPPIING  S+ITL ++NVFIECTATD TKANIVLDTMVTMFS +C  PFTVEPV + Y+  ++ V +  TP+LSSRQ TAK+    S++G ++  + +  LC K+QLGPA        + VTVPPTRSD+LH VD+ ED+ IAYGYNN+  +VP T TVG   P+N   DLLR+E+ RAGY+EVLTHGLCS  +NFT L+RP   AV LSNPAN EY++VRTTLLPGLLK LQHN++     G ++FEISDVVL D      ET VGA+N RRL A Y   T+GFE IHGLVDRVM LL++ P EAY  NS +  EE   V +EG  Y I       P  N T+FPGR A ++L K  N      +GTFG+LHP+VL ++DI +P+S +E+DLE LM
Sbjct:    1 MPTLSVEKDLLFRHLGRTYTDKEFDELCFEFGVELDEVTSEVEEAQKSATVKLSKSQLESLSAAIVYKIDVPANRYDLLCVEGLSRALQIFLGDVDAPEYRRLDGV--SDAAQRVTMTVHKAHTDQIRPFVVCAILRNVTFDEERYASFIDLQDQLHRNLCRQRTLVAIGTHDMDVVQGPFFYDARAPTDISFVPLTPND-KSYVANELLEFYETEPAAKHLKPYVPIIKDSPLYPVIVDSNETVLSLPPIINGSKSKITLDTKNVFIECTATDLTKANIVLDTMVTMFSGYCEVPFTVEPVLVQYQENDKIVSSYVTPVLSSRQETAKVDFCNSLIGIQITPQEMQALCNKVQLGPAQLLENDTVLQVTVPPTRSDILHPVDIAEDIGIAYGYNNIRRRVPTTNTVGGEFPLNQTGDLLREEIGRAGYVEVLTHGLCSVRDNFTALQRPVTAAVKLSNPANVEYQVVRTTLLPGLLKTLQHNKSASFTGGFKLFEISDVVLPDSENVMTETIVGAKNSRRLAAVYAGPTSGFEIIHGLVDRVMTLLEIAPEEAYIANSAKSDEEEYRVAREGWTYTIASLSESDPHVN-TYFPGRAAAILLTKP-NATSSCVVGTFGILHPDVLANFDILYPSSCVELDLEALM 640

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: ETI48007.1 (phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica P1569] >ETI48034.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica P1569] >ETK87936.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica] >ETL41355.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica] >ETL94531.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica] >ETM47742.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica] >ETO76719.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica P1976] >ETP17843.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica CJ01A1])

HSP 1 Score: 688.0 bits (1774), Expect = 2.800e-194
Identity = 363/637 (56.99%), Postives = 462/637 (72.53%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTV-GGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGEN-RRVETTPLLSSRQVTAKMTDVESMV-GR----ELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPE--APAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+ + R++LF ALG+TYTD+EF  LCF+FGIELD++T+E +L  +E +  +GKD +    AV+YKIDVPANRYD+LC+EG++RALRIFLE E  PVY     T      G  ++TV+ +T  +RP VV AILRDV F    Y SFIDLQ+ LH+NICRRRTLVAIGTHDLDT++GPFTY A  P  I+F PLT    + F  KELLDFYRT+   KH+KPYTDIIYD+P+YPV+ D  G VLSLPPIING HS+I+LA++NVFIECTATD TKA +VL+TM+ MFS++CA+PFTVEPV I YE +     E TP LS R V  ++ ++ SM+ G+     L  E +C LC KMQL  A       +++  VP TRSD+LH VDVIEDV IAYG+NN+P+ +P T T+G   P+N   DLLRDE+SRAGY+E+LTHGLCS  ENF  L R +    AV LSNPA  E+E+VRT++LPG+LK +Q+N+A+ +KEGL++FEISDVV+ D+ TDVGA+NVRR+ A+YT  T GFE IHGLVDR+M L+ + P+           E  A  KE   Y I P+E  T+FPGRCA V L K+  + KP ++GTFGVLHPEVLK++D+  PTS LEMDLEPL+
Sbjct:    1 MPTVGVKRDELFAALGQTYTDEEFDVLCFEFGIELDDVTSEKQLKQRE-TKGQGKDHSEHSDAVLYKIDVPANRYDLLCVEGIARALRIFLEKERPPVY-----TLTPRAEGPHSITVKPNTKLVRPYVVSAILRDVKFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTVEGPFTYNALPPNEIKFIPLT--QSKEFEAKELLDFYRTNPEVKHIKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKISLATKNVFIECTATDITKAKVVLNTMIAMFSEYCAKPFTVEPVQINYEDQTVNENELTPNLSKRSVEVQIKNIYSMLFGKGEPINLDVERICKLCDKMQL-DAKPSGNGKTIIAEVPITRSDILHPVDVIEDVGIAYGFNNIPLTIPQTQTIGMAQPLNKLGDLLRDEISRAGYIELLTHGLCSHKENFEYLNREDDGHSAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEISDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI-PSAL---------EMAAGTKE--YYTITPAEERTYFPGRCAYVTLQKE--DAKPLRLGTFGVLHPEVLKNFDLLNPTSVLEMDLEPLV 614

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: XP_008904603.1 (phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica INRA-310] >ETN10166.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica INRA-310] >ETP45840.1 phenylalanine-tRNA ligase, beta subunit [Phytophthora parasitica P10297])

HSP 1 Score: 688.0 bits (1774), Expect = 2.800e-194
Identity = 363/637 (56.99%), Postives = 462/637 (72.53%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTV-GGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGEN-RRVETTPLLSSRQVTAKMTDVESMV-GR----ELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPE--APAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+ + R++LF ALG+TYTD+EF  LCF+FGIELD++T+E +L  +E +  +GKD +    AV+YKIDVPANRYD+LC+EG++RALRIFLE E  PVY     T      G  ++TV+ +T  +RP VV AILRDV F    Y SFIDLQ+ LH+NICRRRTLVAIGTHDLDT++GPFTY A  P  I+F PLT    + F  KELLDFYRT+   KH+KPYTDIIYD+P+YPV+ D  G VLSLPPIING HS+I+LA++NVFIECTATD TKA +VL+TM+ MFS++CA+PFTVEPV I YE +     E TP LS R V  ++ ++ SM+ G+     L  E +C LC KMQL  A       +++  VP TRSD+LH VDVIEDV IAYG+NN+P+ +P T T+G   P+N   DLLRDE+SRAGY+E+LTHGLCS  ENF  L R +    AV LSNPA  E+E+VRT++LPG+LK +Q+N+A+ +KEGL++FEISDVV+ D+ TDVGA+NVRR+ A+YT  T GFE IHGLVDR+M L+ + P+           E  A  KE   Y I P+E  T+FPGRCA V L K+  + KP ++GTFGVLHPEVLK++D+  PTS LEMDLEPL+
Sbjct:    1 MPTVGVKRDELFAALGQTYTDEEFDVLCFEFGIELDDVTSEKQLKQRE-TKGQGKDHSEHSDAVLYKIDVPANRYDLLCVEGIARALRIFLEKERPPVY-----TLTPRAEGPHSITVKPNTKLVRPYVVSAILRDVKFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTVEGPFTYNALPPNEIKFIPLT--QSKEFEAKELLDFYRTNPEVKHIKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKISLATKNVFIECTATDITKAKVVLNTMIAMFSEYCAKPFTVEPVQINYEDQTVNENELTPNLSKRSVEVQIKNIYSMLFGKSEPINLDVERICKLCDKMQL-DAKPSGNGKTIIAEVPITRSDILHPVDVIEDVGIAYGFNNIPLTIPQTQTIGMAQPLNKLGDLLRDEISRAGYIELLTHGLCSHKENFEYLNREDDGHSAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEISDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI-PSAL---------EMAAGTKE--YYTITPAEERTYFPGRCAYVTLQKE--DAKPLRLGTFGVLHPEVLKNFDLLNPTSVLEMDLEPLV 614

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: EJK60932.1 (hypothetical protein THAOC_18650 [Thalassiosira oceanica])

HSP 1 Score: 687.6 bits (1773), Expect = 3.700e-194
Identity = 355/645 (55.04%), Postives = 466/645 (72.25%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKD--GTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMT-VEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLT-SEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIY---EGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASY----DRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRD-----EETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSE-NPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+S+ R+ LF  LG+TYTDDEF +LCF+FG+ELDE+T+E E A+K  +    KD    +   V+YKIDVPANRYD+LC+EG+SR+L++FL   +AP Y  +EP+         TMT V+A+   +RP VVCA+LRDV FDP  Y+SFI+LQ+ LHRN+CR+RTLVAIGTHDLD+++GPFTY A  P  I+F PLT +++G+ F+G+EL++ Y T+ + KHLKPY  II D+PLYPV+ DS+GTVLSLPPIING  SRITL ++NVFIECTATD TKANIVLDT+V MFS++ A+PFTVEPV + Y    G   R   TP + +R+ TAK+  V S++G  + +  +  LC ++QLGPA          D + VTVPPTRSD+LHAVDV EDV IA+GYNN+   VP T TVG+  P+N   DLLRDE+ RAGY EVLTHGLCS A+NFT L RP   AV LSNPAN EYE+VRTTLLPGLLK LQHN+++    G ++FEISDVVL D      ET VGARN RR+ A++T  ++GFE IHGLVDR+M L +V P   Y  +S     +    KEG +Y I+    + ++FPGR A+V+L + G + +P   G+FG+LHP+VL+++D+ +PTSA+E++LE L+
Sbjct:    1 MPTVSVGRDALFAHLGRTYTDDEFDELCFEFGVELDEVTSEREEATKSETVKLSKDQIAALSDEVVYKIDVPANRYDLLCIEGISRSLKVFLGDMDAPSYEVLEPSHEAS----STMTVVQANVDTVRPYVVCAVLRDVTFDPERYQSFIELQDQLHRNLCRQRTLVAIGTHDLDSVRGPFTYDARAPGEIKFVPLTHTDEGREFDGRELMEHYETEPACKHLKPYVPIIKDSPLYPVVLDSEGTVLSLPPIINGSKSRITLDTKNVFIECTATDLTKANIVLDTVVAMFSEYAARPFTVEPVTVSYVDAAGGVARSYVTPQMYTRKETAKVDFVNSLIGISVESSKMADLCNRIQLGPARIIPDGQTGEDVLEVTVPPTRSDILHAVDVAEDVGIAHGYNNIVRTVPGTCTVGREQPLNQLGDLLRDEIGRAGYTEVLTHGLCSTADNFTALGRPVTAAVKLSNPANVEYEVVRTTLLPGLLKTLQHNKSMSFAGGFKLFEISDVVLPDSECVVSETVVGARNSRRVCATFTGPSSGFEIIHGLVDRIMTLCEVAPEAGYVASS-GSAYKSVYCKEGWEYTIRELRGDGSYFPGRGAEVLLKRPGGDFEP--AGSFGILHPDVLRAFDVLYPTSAVELNLEKLL 638

[Close]

BLAST of NO05G01250 vs. NCBI_GenBank
Match: OEU22465.1 (beta subunit of phenylalanyl-tRNA synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 686.4 bits (1770), Expect = 8.200e-194
Identity = 360/656 (54.88%), Postives = 462/656 (70.43%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS--SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTV-EASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRV---ETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRP--EAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEE-----TDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMR--------GEERMAVLKEGMQYYI-------QPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT++L ++ LFT LG+TYTDDEF +LCF+FG+ELDEIT+E E A K  +   SK +   +   VIYKID+PANRYD+LC+EGL R LRIFL  ++AP Y  +E     G GG  T+TV + +T  IRP VV AIL+DV F P  Y SFIDLQ+ LHRN+CR+RTLVAIGTHDLDT++GPF Y A  PT I+F PLT +D   FN K+L+++Y T+ + KHLKPY  II ++PLYPV+ DSQ  VLSLPPIING HS+ITL ++NVFIECTATD TKANIVLDT+VTMFS++CA+PFTV PV + Y+ ++  +     +P+LS R+ TAK+    S++G  L    +  LC K+QLGPA        + VTVPPTRSD+LHAVD+ ED+AIAYGYNN+  +VP T TVG   P+N   DLLR+E+ RAGY EVLTHGLCS  +NFT L+ P  E  AVSLSNPAN EY++VRTTLLPGLLK  QHN++    +G ++FEISD V+ D E     T VGARNVR+L A+Y   T+GFE IHGLVDR+M L++V P  +Y   S +         EE+  + +EG  Y I          E+  +FPGR A V+L K  ++ K  ++GTFG+LHP VLK++DI +P+S +E+DLE LM
Sbjct:    1 MPTVALEKDQLFTHLGRTYTDDEFDELCFEFGVELDEITSEREEAEKSSTVKLSKQQIAELSENVIYKIDIPANRYDLLCVEGLCRGLRIFLGDQDAPEYTIVE---GEGAGGSATVTVIKTNTDTIRPFVVAAILKDVVFTPERYASFIDLQDQLHRNLCRQRTLVAIGTHDLDTVEGPFVYDARPPTEIEFVPLTPDDRGAFNAKDLMEYYETEVAVKHLKPYVPIIKNSPLYPVIVDSQNRVLSLPPIINGTHSKITLDTKNVFIECTATDLTKANIVLDTVVTMFSEYCAKPFTVVPVKVDYQDDSGNIVDSYVSPMLSKRRETAKIDFCNSLIGINLSPTEIQNLCNKVQLGPAQLLENDTILEVTVPPTRSDILHAVDIAEDIAIAYGYNNIVKRVPKTNTVGGAEPLNQVGDLLREEIGRAGYTEVLTHGLCSIHDNFTALQCPVREDWAVSLSNPANIEYQVVRTTLLPGLLKTFQHNKSASFAQGFKLFEISDAVVIDRENSITDTIVGARNVRKLCAAYAGPTSGFEIIHGLVDRIMTLMEVAPEASYVATSGKKSSATGGADEEKYRISREGWYYTIAELPYNGNAHESKMYFPGRAAQVLLTKPSHKEK-IRVGTFGILHPLVLKNFDIQYPSSVVEIDLEELM 652

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BLAST of NO05G01250 vs. NCBI_GenBank
Match: POM71356.1 (Phenylalanine-tRNA ligase, beta subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 684.5 bits (1765), Expect = 3.100e-193
Identity = 359/639 (56.18%), Postives = 464/639 (72.61%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGG---AVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGEN-RRVETTPLLSSRQVTAKMTDVESMV-GR----ELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPE--APAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+ + R++LF A+G++YTD+EF  LCF+FGIELD+IT+E +L  +E   +KG+D    G   AV+YKIDVPANRYD+LC+EG++RALRIFLE E  PVY     T      G   +TV+ +T  +RP VV A+LRDV F    Y SFIDLQ+ LH+NICRRRTLVAIGTHDLD+++GPFTY A  P  I+F PL+ +  + F  KELLDFYRT+   KH+KPYTDIIYD+P+YPV+ D  G VLSLPPIING HS+I+L ++NVFIECTATD TKA +VL+TM+ MFS++CA+PFTVEPV IIYE +     E TP LS R V  ++ D+ SM+ G+     L  + +C LC KMQL  A       +++  +P TRSD+LH VDVIEDV IAYG+NN+P+ +P+T T+G   P+N   DLLRDE+SRAGY+E+LTHGLCS  ENF  L R +    AV LSNPA  E+E+VRT++LPG+LK +Q+N+A+ +KEGL++FEISDVV+ D+ TDVGA+NVRR+ A+YT  T GFE IHGLVDR+M LL + P+E          E  A  KE   Y I P+E  T+FPGRCA + L K+  + KP ++GTFGVLHP+VLK++D+  PTS LEMDLEPL+
Sbjct:    1 MPTVGVKRDELFAAMGQSYTDEEFDVLCFEFGIELDDITSEKQLKQRE---TKGQDKDHSGHSDAVLYKIDVPANRYDLLCVEGIARALRIFLEKERPPVY-----TLTPRAEGPHHITVKPTTKLVRPYVVSAVLRDVQFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDSVEGPFTYNALPPNEIKFQPLSQD--KEFEAKELLDFYRTNPDVKHIKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKISLDTKNVFIECTATDITKAKVVLNTMIAMFSEYCAKPFTVEPVQIIYEDQTVNENELTPNLSKRSVEVQIKDIYSMLFGKGEPINLDIDRICKLCDKMQL-DAKPSGNGKTIIAEIPITRSDILHPVDVIEDVGIAYGFNNIPLTIPSTQTIGMAQPLNKLGDLLRDEISRAGYIELLTHGLCSHKENFEYLNREDDGHSAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEISDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLLGI-PSEL---------EMPAGTKE--YYTITPAEERTYFPGRCAYLTLQKE--DAKPLRLGTFGVLHPQVLKNFDLLNPTSVLEMDLEPLV 614

[Close]

BLAST of NO05G01250 vs. NCBI_GenBank
Match: XP_009529748.1 (hypothetical protein PHYSODRAFT_545525 [Phytophthora sojae] >EGZ15999.1 hypothetical protein PHYSODRAFT_545525 [Phytophthora sojae])

HSP 1 Score: 681.0 bits (1756), Expect = 3.500e-192
Identity = 353/636 (55.50%), Postives = 458/636 (72.01%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGEN-RRVETTPLLSSRQVTAKMTDVESMV-GR----ELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPE--APAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPT+ + R++LF A+G+TYTD+EF  LCF+FGIELD+IT+E +L  +E             AV+YKIDVPANRYD+LC+EG++RALRIFLE E  PVY     T      G   +TV+ +T  +RP VV A+LRDV F    Y SFIDLQ+ LH+NICRRRTLVAIGTHDLDT++GPFTY A  P  I+F PL+ +  + F  KELLDFYRT+   KH+KPYTDIIYD+P+YPV+ D  G VLSLPPIING HS+I+L ++NVFIECTATD TKA +VL+TM+ MFS++CA+PFTVEPV +IYE E   + E TP LS R V  ++ ++ SM+ G+    +L  + +C LC KMQL  A       +++  VP TRSD+LH VDVIEDV IAYG+NN+P+ +P T T+G   P+N   DLLRDE+SRAGY+E+LTHGLCS  ENF  L R +    AV L+NPA  E+E+VRT++LPG+LK +Q+N+A+ +KEGL++FEISDVV+ D+ TDVGA+NVRR+ A+YT  T GFE IHGLVDR+M L+ + P+           E  A  KE   Y I P+E  T+FPGRCA + L K+  + +P ++GTFGVLHP+VLK++D+  PTS LEMDLEPL+
Sbjct:    1 MPTVGVKRDELFAAMGQTYTDEEFDVLCFEFGIELDDITSEKQLKQRETQGQDKDHSAHSDAVLYKIDVPANRYDLLCVEGIARALRIFLEKERPPVY-----TLTPRAEGPHHITVKPNTKLVRPFVVSAVLRDVQFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTIQGPFTYNALPPNEIKFKPLSQD--KEFEAKELLDFYRTNPDVKHIKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKISLDTKNVFIECTATDITKAKVVLNTMIAMFSEYCAKPFTVEPVQVIYEDETVNQNELTPNLSKRSVEVQIKNIYSMLFGKGEPIDLDVDRICKLCNKMQL-DAKPSGNGKTIIAEVPITRSDILHPVDVIEDVGIAYGFNNIPLTIPHTQTIGMAQPLNKLGDLLRDEISRAGYIELLTHGLCSHKENFEYLNREDDGHSAVVLANPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEISDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI-PSAL---------EMPAGTKE--YYTITPAEERTYFPGRCAYLTLQKE--DAEPLRLGTFGVLHPQVLKNFDLLNPTSVLEMDLEPLV 614

[Close]

BLAST of NO05G01250 vs. NCBI_GenBank
Match: OQR96595.1 (phenylalanyl-tRNA synthetase beta chain [Thraustotheca clavata])

HSP 1 Score: 679.9 bits (1753), Expect = 7.700e-192
Identity = 352/636 (55.35%), Postives = 456/636 (71.70%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVETTPLLSSRQVTAKMTDVESMV-----GRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPE--APAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLL--QVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPL 628
            MPT+ + R++LF A+G+++TD+EF  LCF+FGIELDE+T+E ++  KE   +K   G    AVIYKIDVPANRYD+LC+EG++RALR+F++ E  PV+R +EP     +  +  M +E     +RP VV  ILRDV F P  Y SFIDLQ+ LH+NICRRRTLVAIGTHDLDT++GPFTY    P +I+F PL     + FN +ELLD YRT+   KHLKPYTDIIYD P YP++YD   TVLSLPPIIN  HS+I L+++NVFIECTATD TKAN+VL+TMV MFSQ+CA PFTVEPV+I+YE +  + E+TP +S+R+V  K+ D++SM+       +L  E +C LC KMQL  A+Y + + S+ V VPPTRSD+LH VDV+EDV IAYGY+N+P+  P T T+G+  PIN   D LRDE+SRAGYLE+LTHGLCS  ENF  L + +    AV LSNPA  E+E+VRTT++PG+LK +Q+N+++ +KEGL++FEISDVV+ D+ +DVGA+N+RRL A YT  T GFE IHGLVDRVM LL  Q    + Y  N              + Y + PS N TFFPGR AD++L      G+  K+GTFGVLHP VL  YD+ +P S +EMD+EPL
Sbjct:  421 MPTVGVKRDELFAAIGQSFTDEEFDQLCFEFGIELDEVTSERKMKEKE-QGAKAASG-ADDAVIYKIDVPANRYDLLCVEGIARALRVFMQKELPPVFRVVEPKKKQVITVKKGMGLE----TMRPFVVSCILRDVKFTPERYASFIDLQDKLHQNICRRRTLVAIGTHDLDTIQGPFTYEGQAPENIRFVPLAQT--REFNARELLDHYRTNPDFKHLKPYTDIIYDFPTYPIIYDKNRTVLSLPPIINSEHSKIKLSTKNVFIECTATDITKANVVLNTMVAMFSQYCAAPFTVEPVEIVYENDGHK-ESTPNMSNREVITKVKDIQSMLFGTREPIDLSVERICQLCVKMQL-QANYLKESHSIKVQVPPTRSDILHPVDVMEDVGIAYGYDNIPVTHPPTQTIGQAQPINKLVDHLRDEISRAGYLELLTHGLCSHDENFKFLNQKDNGKSAVVLSNPATIEFEVVRTTMIPGVLKTVQNNKSMSLKEGLKLFEISDVVVLDDASDVGAKNIRRLCALYTGQTDGFEVIHGLVDRVMQLLGIQCSLEDGYDKN--------------LFYTMVPSSNATFFPGRSADIVL---SQNGEKIKLGTFGVLHPIVLNHYDLLYPCSVVEMDIEPL 1029

The following BLAST results are available for this feature:

BLAST of NO05G01250 vs. NCBI_GenBank

BLAST of NO05G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28153.1	7.500e-304	81.85	phenylalanyl-trna synthetase beta chain [Nannochlo...	[more]
CBN76985.1	2.200e-215	59.81	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002180471.1	1.700e-194	56.74	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
ETI48007.1	2.800e-194	56.99	phenylalanine-tRNA ligase, beta subunit [Phytophth...	[more]
XP_008904603.1	2.800e-194	56.99	phenylalanine-tRNA ligase, beta subunit [Phytophth...	[more]
EJK60932.1	3.700e-194	55.04	hypothetical protein THAOC_18650 [Thalassiosira oc...	[more]
OEU22465.1	8.200e-194	54.88	beta subunit of phenylalanyl-tRNA synthetase [Frag...	[more]
POM71356.1	3.100e-193	56.18	Phenylalanine-tRNA ligase, beta subunit [Phytophth...	[more]
XP_009529748.1	3.500e-192	55.50	hypothetical protein PHYSODRAFT_545525 [Phytophtho...	[more]
OQR96595.1	7.700e-192	55.35	phenylalanyl-tRNA synthetase beta chain [Thraustot...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL087	nonsL087	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL086	nonsL086	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR118	ngnoR118	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003745	NSK003745	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G01250.1	NO05G01250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583793	gene_2916	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100004g49	gene2309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G01250.1	NO05G01250.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G01250 ID=NO05G01250|Name=NO05G01250|organism=Nannochloropsis oceanica|type=gene|length=1887bp
ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA

protein sequence of NO05G01250.1

>NO05G01250.1-protein ID=NO05G01250.1-protein|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS
SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRK
IEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQ
EHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQI
FNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIIN
GRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVD
IIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQL
GPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATL
TVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAV
SLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDE
ETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSM
RGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTF
GVLHPEVLKSYDIPFPTSALEMDLEPLM*

Synonyms

Publications