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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:356375..358261 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01250.1 vs.
Match: EWM28153.1 (phenylalanyl-trna synthetase beta chain [Nannochloropsis gaditana]) HSP 1 Score: 1052.0 bits (2719), Expect = 7.500e-304 Identity = 514/628 (81.85%), Postives = 572/628 (91.08%), Query Frame = 0
Query: 1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
MPTISLVR+DLF ALGK+YTDDEFQD+CF FGIELDEITTE ELASK+ + SKGK G GGAV+YK+DVPANRYDILCMEGL+RALRIFLEL++AP YRK+EPT NGG R M+VEASTA++RP V CAILRD+ FDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTL+GPF YTAA P SIQFSPLTS+DG++FN KELLDFYRTDESAKHL PYTDIIY+AP YPVLYDS+GTVLSLPP+INGRHSRITL +RNVFIECTATD+TKANIVLDT+VTMFSQHCA+PFTVEPVD++YEG VETTPLLS+R+V AKM+++E +VGR+LG ELVC LC KMQLGPASY TD+VVVTVPPTRSDVLHAVDVIEDVAIA+GYNNLPIKVP TLTVG PLPINAF+DLLRDE++RAGYLEVLTHGLCSRAENF KLRRPE AVSLSNPANEEYEIVRTTLLPGLLKVLQHNRA QVK+GLR FEISDVVLRD+ TDVGA+N+RRLVAS T M AGFESIHGLVDRVMLL+Q+GPTEAYAGNSMRGEERMAVLK+ +QYYI PS++P +FPGRCADV+LV+ G + KP K+GTFGVLHPEVLK+YDIPFPTS LE+DLEPL+
Sbjct: 1 MPTISLVRDDLFNALGKSYTDDEFQDVCFAFGIELDEITTEGELASKD-AGSKGKCGPDGGAVVYKVDVPANRYDILCMEGLTRALRIFLELDKAPSYRKVEPTDNGGT--RTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNAKELLDFYRTDESAKHLSPYTDIIYEAPRYPVLYDSRGTVLSLPPVINGRHSRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQHCARPFTVEPVDVVYEGPELSVETTPLLSTRKVAAKMSEIEGLVGRDLGPELVCQLCNKMQLGPASYHAETDTVVVTVPPTRSDVLHAVDVIEDVAIAFGYNNLPIKVPGTLTVGAPLPINAFSDLLRDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTDVGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQIGPTEAYAGNSMRGEERMAVLKDKIQYYIVPSDDPAYFPGRCADVILVEDGKKSKPLKVGTFGVLHPEVLKAYDIPFPTSMLEIDLEPLI 625
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA back to topprotein sequence of NO05G01250.1 >NO05G01250.1-protein ID=NO05G01250.1-protein|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRK IEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQ EHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQI FNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIIN GRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVD IIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQL GPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATL TVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAV SLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDE ETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSM RGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTF GVLHPEVLKSYDIPFPTSALEMDLEPLM* back to topmRNA from alignment at chr5:356375..358261- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at chr5:356375..358261- (Nannochloropsis oceanica) ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA back to topCoding sequence (CDS) from alignment at chr5:356375..358261- >NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at chr5:356375..358261- (Nannochloropsis oceanica) ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA back to top
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