NO05G01250.1, NO05G01250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01250.1
Unique Name	NO05G01250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1887
Alignment location	chr5:356375..358261 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:356375..358261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G01250.1 vs.
Match: EWM28153.1 (phenylalanyl-trna synthetase beta chain [Nannochloropsis gaditana])

HSP 1 Score: 1052.0 bits (2719), Expect = 7.500e-304
Identity = 514/628 (81.85%), Postives = 572/628 (91.08%), Query Frame = 0

Query:    1 MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGSSSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRKIEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQIFNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIINGRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVDIIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQLGPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATLTVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDEETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSMRGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTFGVLHPEVLKSYDIPFPTSALEMDLEPLM 629
            MPTISLVR+DLF ALGK+YTDDEFQD+CF FGIELDEITTE ELASK+ + SKGK G  GGAV+YK+DVPANRYDILCMEGL+RALRIFLEL++AP YRK+EPT NGG   R  M+VEASTA++RP V CAILRD+ FDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTL+GPF YTAA P SIQFSPLTS+DG++FN KELLDFYRTDESAKHL PYTDIIY+AP YPVLYDS+GTVLSLPP+INGRHSRITL +RNVFIECTATD+TKANIVLDT+VTMFSQHCA+PFTVEPVD++YEG    VETTPLLS+R+V AKM+++E +VGR+LG ELVC LC KMQLGPASY   TD+VVVTVPPTRSDVLHAVDVIEDVAIA+GYNNLPIKVP TLTVG PLPINAF+DLLRDE++RAGYLEVLTHGLCSRAENF KLRRPE  AVSLSNPANEEYEIVRTTLLPGLLKVLQHNRA QVK+GLR FEISDVVLRD+ TDVGA+N+RRLVAS T M AGFESIHGLVDRVMLL+Q+GPTEAYAGNSMRGEERMAVLK+ +QYYI PS++P +FPGRCADV+LV+ G + KP K+GTFGVLHPEVLK+YDIPFPTS LE+DLEPL+
Sbjct:    1 MPTISLVRDDLFNALGKSYTDDEFQDVCFAFGIELDEITTEGELASKD-AGSKGKCGPDGGAVVYKVDVPANRYDILCMEGLTRALRIFLELDKAPSYRKVEPTDNGGT--RTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNAKELLDFYRTDESAKHLSPYTDIIYEAPRYPVLYDSRGTVLSLPPVINGRHSRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQHCARPFTVEPVDVVYEGPELSVETTPLLSTRKVAAKMSEIEGLVGRDLGPELVCQLCNKMQLGPASYHAETDTVVVTVPPTRSDVLHAVDVIEDVAIAFGYNNLPIKVPGTLTVGAPLPINAFSDLLRDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTDVGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQIGPTEAYAGNSMRGEERMAVLKDKIQYYIVPSDDPAYFPGRCADVILVEDGKKSKPLKVGTFGVLHPEVLKAYDIPFPTSMLEIDLEPLI 625

The following BLAST results are available for this feature:

BLAST of NO05G01250.1 vs.

BLAST of NO05G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28153.1	7.500e-304	81.85	phenylalanyl-trna synthetase beta chain [Nannochlo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G01250	NO05G01250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01250.1	NO05G01250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01250.1.cds1	NO05G01250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:356375..358261-
coding sequence from alignment at chr5:356375..358261-

mRNA sequence

>NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp
ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA

protein sequence of NO05G01250.1

>NO05G01250.1-protein ID=NO05G01250.1-protein|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS
SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRK
IEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQ
EHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQI
FNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIIN
GRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVD
IIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQL
GPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATL
TVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAV
SLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDE
ETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSM
RGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTF
GVLHPEVLKSYDIPFPTSALEMDLEPLM*

mRNA from alignment at chr5:356375..358261-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at chr5:356375..358261- (Nannochloropsis oceanica)
ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA

Coding sequence (CDS) from alignment at chr5:356375..358261-

>NO05G01250.1 ID=NO05G01250.1|Name=NO05G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at chr5:356375..358261- (Nannochloropsis oceanica)
ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA

Synonyms

Publications