NO05G01220, NO05G01220 (gene) Nannochloropsis oceanica

Overview
NameNO05G01220
Unique NameNO05G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3279
Alignment locationchr5:352863..356141 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:352863..356141 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035992Ricin_B-like_lectins
IPR000772Ricin_B_lectin
Homology
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BLAST of NO05G01220 vs. NCBI_GenBank
Match: CBN76851.1 (hypothetical protein Esi_0023_0084 [Ectocarpus siliculosus])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 0 
Query:  195 LQAADGICFDGERFRPCDLRDPLLRWSMGVRLTGGQGERFFYKAFQPDLCLTWTRGKKGVTVGDCSGKGAKSWSIKRGQLALGDGKMCVVRNFDNTAGIAKCTEAFEYLSVV 307
            +  AD  CFDG RFR C+  DP LRW +G+     +  R  +  F  + C    R  +    GDC  KGA  W  + G+L  G GK C+ R  DN A +  C+E  E+++ +
Sbjct:    3 IATADDYCFDGARFRTCNDGDPTLRWGIGIDFRSTEPSRNLFYFFDREKCA--VREGETARKGDCKNKGAARWGWRDGKLTQG-GKHCLGRGRDNKAIMVPCSEGHEHVNFI 111
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BLAST of NO05G01220 vs. NCBI_GenBank
Match: PIK62651.1 (hypothetical protein BSL78_00443 [Apostichopus japonicus])

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-10
Identity = 58/216 (26.85%), Postives = 87/216 (40.28%), Query Frame = 0 
Query:   89 GNVLISLLENDNSDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDSRGYVRVSEDKGKNCLVRSKAGGTGKFKRFKNTVEMQHCSIGYTGLLMTEVPFSEGGFLLQAADGICFDGERFRPCDLRDPLLRWSMGVRLTGGQGERFFYKAFQPDLCLTWTR---GKKGVTVGDCSGKGAKSWSIKRGQLALGDGKMCVVRNFDNTAGIAKCTEAFE 302
            GN  I L     S  CL+R+ CHSS S +    C +CG+ HW + +D      + EDKG NC+    +          NTVE+ H S G T   +  +   +   L     G C     F  C+        S    +  G    + ++      CL           + + DC+  GA  WSI   ++     + CV R  DN A +A C++ +E
Sbjct:  123 GNQRIELF---GSSQCLDREHCHSSTSNLRSSDCGHCGAVHWDLRKDG----TLREDKGLNCIYAMLSA---------NTVEVHHTSDGCTPFKVAVI--GDSVLLKTVTYGDCLSNGVFTDCE--------SAPRFMVFGLPYNYQFRNVITGTCLDREHCHFSTSNIRLFDCTHCGAIHWSIDGTKVGEDSMQNCVDRGQDNAAVMAHCSDGWE 312
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BLAST of NO05G01220 vs. NCBI_GenBank
Match: EWM21587.1 (ankyrin [Nannochloropsis gaditana])

HSP 1 Score: 75.5 bits (184), Expect = 3.500e-10
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:   52 GKRFFWLIDPRDNTCLGALGFGMCDGSTAWVFADRREGNVLI--SLLENDNSDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDS-RGYVRVSEDKGKNCLVRSK 156
            GK  F+L DP D +CL    F  C   T W +   + G+  I    +E  + ++CL++K C++  S V + SCK+CG+ +W+I  DS  GYV +SE  GK CL+R K
Sbjct:   43 GKPSFFLQDPSDGSCLAGGEFKRCAIDTLW-YVQGKPGHYQIHHRPVEETDEELCLDKKSCNADKSDVRLASCKHCGATNWNILGDSDTGYV-LSEGDGKYCLMREK 147
The following BLAST results are available for this feature:
BLAST of NO05G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
CBN76851.13.700e-1235.71hypothetical protein Esi_0023_0084 [Ectocarpus sil... [more]
PIK62651.11.200e-1026.85hypothetical protein BSL78_00443 [Apostichopus jap... [more]
EWM21587.13.500e-1039.25ankyrin [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003746NSK003746Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01220.2NO05G01220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G01220.1NO05G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01220.2NO05G01220.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G01220.1NO05G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01220 ID=NO05G01220|Name=NO05G01220|organism=Nannochloropsis oceanica|type=gene|length=3279bp
AACCCCAGCCACCTACAGCAACAGGAGCGCCAGCACTATGGTCAGTCGCC
GCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCTTCTGTTCCTCGCC
CTTCTACTAACGGCCATCCACGCCGTGAAGACCAAGCCCAAAAAAGCCCC
GGCCCCCAAGAAGAAGCGGGACTCCTCCTATTCCAACAAAGGAAAGCGCT
TCTTCTGGCTGATCGACCCGAGAGACAACACTTGCTTGGGTGCCTTAGGG
TTTGGGATGTGCGACGGGTCGACGGCATGGGTATTTGCAGACCGGCGTGA
GGGCAACGTCCTGATCTCTTTGCTCGAGAACGATAACAGCGACATGTGCC
TGGAACGGAAATGGTGTCATTCCTCCGTCTCACCAGTATCAATCGGATCG
TGCAAAAATTGTGGATCGAAGCATTGgtatgtattagcgcggagagaaag
gaaaggtggagggagggaagagtaggatgctggtcgggagcagctgcaag
tgagcgtgggttgcccttttgcagataatgcattccttaagcatggagtg
tgacgttgcaattaattccttactttcgtcttcctaatcaaatacacagG
TCAATCGACCGAGACAGCCGAGGCTATGTCCGTGTCTCAGAAGACAAAGG
CAAAAACTGCCTCGTGAGATCAAAGGCTGGTGGAACAGGTAAATTTAAGC
GCTTCAAAAACACAGTGGAAATGCAGCATTGTTCAATCGGCTACACTGGT
CTGCTCATGACTGAAGTTCCCTTTTCCGAGGGAGGATTTTTGCTGCAGGC
CGCAGATGGGTAAGGCTGGAGGGAGGGAAGGGAAAAGAAAGTGCGAAAGG
GTAAGAATCCCCCTAGTTTTTGTGAGATGTGCTCTTGGTTGAGCGCCACT
GGATGCATGGCGCGACAAATAGTAAGCCTTGCTCTTCCTTCCCTCACTTC
CTCCATCCCTCTCATCAACAGCATATGCTTCGATGGCGAGCGTTTCCGCC
CCTGCGATTTACGAGATCCCCTGCTCCGCTGGTCTATGGGTGTCCGTCTC
ACGGGCGGACAAGGAGAACGATTCTTCTACAAGGCGTTCCAACCGGATTT
GTGTCTGACCTGGACGAGGGGTAAGAAGGGTGTGACTGTAGGCGATTGCT
CAGGGAAGGGAGCGAAGTCATGGAGCATAAAAAGAGGGCAGCTGGCTCTG
GGTGATGGGAAAATGTGCGTAGTCAGAAATTTTGACAACACCGCAGGAAT
CGCGAAATGCACCGAGGCATTTGAGTATCTGAGTGTGGTGCCGCATGATC
CGACGGCGGGTAAATTGACGCAGGGCGGTCCTGTGACAGCAGGAATAGAA
CTTGGGTAGCGAAGGGGGGAGGAAGAGTAAACCGTATGTGTCATATGTAA
TAATGCAGGAGGAAGGGGAGCAAAAGAACGCAAAAGAAGGGGATAGACGA
GGAGCACAAATAAAAAGGGCATAAATTGCGAAGTTGAGATATCCTCGACT
CTGTCTCGAAGCCAAGGCCATGTATCGTCATTCTTTTGTTCTCGATCCGT
GTTTCAACACCCATACACAACGCGACCCGCGTGGAGTGCAGCGCAGGGAG
CAGAGCCGCTTACATCAACAATGACAAGAAGAAATTTATACAGAGTTGTA
CATAGAAACACACTGAATTCATCGCCGCCAATACCACGCACGCCGCGCTT
GTTTCCTGTATCTCTTTCCCTCTATTTACCTCCCGTGCACCCCCTTCAAT
TTCTGCCTCCAATTTCATTGCATCTTCGAACTATCTCAGCTTCCTCCTCT
TCTTCCTCCTTCCGTCCGCCCTCTTCCGCCTGTCTTCTCCTATCGTCGCC
TTCTTTCAGCTACCACAGTGACCAGCACACTAACCGCCATCCCTACGCCC
ATCACGCCTACTATCACCTTGTTCCACGACACGCACAACGTGGTCGGAAA
CCTCCACCGGGCAATATCTGCCACATCGAAATCCATGGCTATATCCCTCG
TGTCTCCCAAGGACTGCACCAACCCTCTTAACAACGCCGTCATCTTAGGG
GCGATTTCCCCCTGTCGATGCTCCTCCTCCCTCCTTAGTTTCATCTCATA
CGCCACCCGCTTATCGGTATCATATTCATAATGCGGAATCCCAGCCAGCC
TTTCCGTGTTCTCTTGCGTGACGAAATAGATTCCACTCAATGCCACCACC
TTCAAGCCGCAATGATCAGCCACCAGCACCTCGGGCACCGTGCTCATCCC
CACCACCATATCATGCAGCCCAAAATGATTCAACATTCGATCCAGCATGT
CAAACACCCCCCCAGGTTGATACCCCCCCTTCTATCCATCGCACCCATCC
AGTATTTTAAGTGCATTAACGCCCTCCCCCACCCCTTCCTTTTTTCACAC
AAATTCCGCAACCCATCCTCCTCCATTGGCGTCTCATACGACGGACCCGA
CACAAAAATATAACCACCCTGCTTCAGCGCGATCCGTTTTTCTTTCGCAA
TTCGCCGGGTAAGCCGGCGTAAATTAATGTCGTACAAGTTATCACATCGT
AGGAAACGAGGCCCCCAATGCTCTAGGTTAATCCCTGCCAGCGGGTGCGT
CTCGCTGCTCCGTTCCGTGTTGTAATGATCGACCACTAACATGACATCCC
CAATCTCCAAGGTCGGACTTAAACCCCGCGCAGCATTCGTCAGAATTAAG
GTTTGTACACCCAGCTCCTTCATGATGCGCACGGGAAAGGCCGTGGCCTG
GGTGGAATGCCCTTCGTACGTGTGAAATCGGCCCTGCATCACGATCACGC
TCACCCCGTCCACCAATCCAAAAATGAAGGCGCCTTCCGTGCCCATCGTC
GCGGAGCATGTCGGGAAGGAAGGGAAGAAGTCTTGGACTTCTTCATAATA
CACTTTCTCAGGGGCTTCGATGGCTCGTTCAAAATCTTGCAGACGACTGC
CCAGAACAATGGCAATCTCTGGAGCGGGGTGGCTGCTTCGCGACCGCAAA
AAATCAGCGACTTTACGGGCGTCTTCGAGGTAGTAGTTCCGCTCCCTAAT
AGGGTGGAAAAGCTTATCAGTTGACATGGTCCGATTGCGGCGGGAGGGTG
GTGATTCGACAGAGTGTGGTGCCGCGGAGAGGGTACAAATGCCGCGTTGA
CGTAGCCACGGGGTTGGTGATGGTGAAGCAGGGCCGATTCTGGGCAGCAG
ATGAAGACAGCTCGGGAAATGCCACGGAGCGACGGATAATGCAGCTAGAT
GAGCCCTTTAATACCTGTGAACTTTTTTT
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protein sequence of NO05G01220.2

>NO05G01220.2-protein ID=NO05G01220.2-protein|Name=NO05G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MVSRRHCHSGRHFLLVLLFLALLLTAIHAVKTKPKKAPAPKKKRDSSYSN
KGKRFFWLIDPRDNTCLGALGFGMCDGSTAWVFADRREGNVLISLLENDN
SDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDSRGYVRVSEDKGKNC
LVRSKAGGTGKFKRFKNTVEMQHCSIGYTGLLMTEVPFSEGGFLLQAADG
*
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protein sequence of NO05G01220.1

>NO05G01220.1-protein ID=NO05G01220.1-protein|Name=NO05G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MVSRRHCHSGRHFLLVLLFLALLLTAIHAVKTKPKKAPAPKKKRDSSYSN
KGKRFFWLIDPRDNTCLGALGFGMCDGSTAWVFADRREGNVLISLLENDN
SDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDSRGYVRVSEDKGKNC
LVRSKAGGTGKFKRFKNTVEMQHCSIGYTGLLMTEVPFSEGGFLLQAADG
ICFDGERFRPCDLRDPLLRWSMGVRLTGGQGERFFYKAFQPDLCLTWTRG
KKGVTVGDCSGKGAKSWSIKRGQLALGDGKMCVVRNFDNTAGIAKCTEAF
EYLSVVPHDPTAGKLTQGGPVTAGIELG*
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Synonyms
Publications