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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:352863..356141 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01220.2 vs.
Match: EWM21587.1 (ankyrin [Nannochloropsis gaditana]) HSP 1 Score: 75.5 bits (184), Expect = 2.100e-10 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0
Query: 52 GKRFFWLIDPRDNTCLGALGFGMCDGSTAWVFADRREGNVLISL--LENDNSDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDS-RGYVRVSEDKGKNCLVRSK 156
GK F+L DP D +CL F C T W + + G+ I +E + ++CL++K C++ S V + SCK+CG+ +W+I DS GYV +SE GK CL+R K
Sbjct: 43 GKPSFFLQDPSDGSCLAGGEFKRCAIDTLW-YVQGKPGHYQIHHRPVEETDEELCLDKKSCNADKSDVRLASCKHCGATNWNILGDSDTGYV-LSEGDGKYCLMREK 147
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01220.2 ID=NO05G01220.2|Name=NO05G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=3106bp
AACCCCAGCCACCTACAGCAACAGGAGCGCCAGCACTATGGTCAGTCGCC
GCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCTTCTGTTCCTCGCC
CTTCTACTAACGGCCATCCACGCCGTGAAGACCAAGCCCAAAAAAGCCCC
GGCCCCCAAGAAGAAGCGGGACTCCTCCTATTCCAACAAAGGAAAGCGCT
TCTTCTGGCTGATCGACCCGAGAGACAACACTTGCTTGGGTGCCTTAGGG
TTTGGGATGTGCGACGGGTCGACGGCATGGGTATTTGCAGACCGGCGTGA
GGGCAACGTCCTGATCTCTTTGCTCGAGAACGATAACAGCGACATGTGCC
TGGAACGGAAATGGTGTCATTCCTCCGTCTCACCAGTATCAATCGGATCG
TGCAAAAATTGTGGATCGAAGCATTGGTCAATCGACCGAGACAGCCGAGG
CTATGTCCGTGTCTCAGAAGACAAAGGCAAAAACTGCCTCGTGAGATCAA
AGGCTGGTGGAACAGGTAAATTTAAGCGCTTCAAAAACACAGTGGAAATG
CAGCATTGTTCAATCGGCTACACTGGTCTGCTCATGACTGAAGTTCCCTT
TTCCGAGGGAGGATTTTTGCTGCAGGCCGCAGATGGGTAAGGCTGGAGGG
AGGGAAGGGAAAAGAAAGTGCGAAAGGGTAAGAATCCCCCTAGTTTTTGT
GAGATGTGCTCTTGGTTGAGCGCCACTGGATGCATGGCGCGACAAATAGT
AAGCCTTGCTCTTCCTTCCCTCACTTCCTCCATCCCTCTCATCAACAGCA
TATGCTTCGATGGCGAGCGTTTCCGCCCCTGCGATTTACGAGATCCCCTG
CTCCGCTGGTCTATGGGTGTCCGTCTCACGGGCGGACAAGGAGAACGATT
CTTCTACAAGGCGTTCCAACCGGATTTGTGTCTGACCTGGACGAGGGGTA
AGAAGGGTGTGACTGTAGGCGATTGCTCAGGGAAGGGAGCGAAGTCATGG
AGCATAAAAAGAGGGCAGCTGGCTCTGGGTGATGGGAAAATGTGCGTAGT
CAGAAATTTTGACAACACCGCAGGAATCGCGAAATGCACCGAGGCATTTG
AGTATCTGAGTGTGGTGCCGCATGATCCGACGGCGGGTAAATTGACGCAG
GGCGGTCCTGTGACAGCAGGAATAGAACTTGGGTAGCGAAGGGGGGAGGA
AGAGTAAACCGTATGTGTCATATGTAATAATGCAGGAGGAAGGGGAGCAA
AAGAACGCAAAAGAAGGGGATAGACGAGGAGCACAAATAAAAAGGGCATA
AATTGCGAAGTTGAGATATCCTCGACTCTGTCTCGAAGCCAAGGCCATGT
ATCGTCATTCTTTTGTTCTCGATCCGTGTTTCAACACCCATACACAACGC
GACCCGCGTGGAGTGCAGCGCAGGGAGCAGAGCCGCTTACATCAACAATG
ACAAGAAGAAATTTATACAGAGTTGTACATAGAAACACACTGAATTCATC
GCCGCCAATACCACGCACGCCGCGCTTGTTTCCTGTATCTCTTTCCCTCT
ATTTACCTCCCGTGCACCCCCTTCAATTTCTGCCTCCAATTTCATTGCAT
CTTCGAACTATCTCAGCTTCCTCCTCTTCTTCCTCCTTCCGTCCGCCCTC
TTCCGCCTGTCTTCTCCTATCGTCGCCTTCTTTCAGCTACCACAGTGACC
AGCACACTAACCGCCATCCCTACGCCCATCACGCCTACTATCACCTTGTT
CCACGACACGCACAACGTGGTCGGAAACCTCCACCGGGCAATATCTGCCA
CATCGAAATCCATGGCTATATCCCTCGTGTCTCCCAAGGACTGCACCAAC
CCTCTTAACAACGCCGTCATCTTAGGGGCGATTTCCCCCTGTCGATGCTC
CTCCTCCCTCCTTAGTTTCATCTCATACGCCACCCGCTTATCGGTATCAT
ATTCATAATGCGGAATCCCAGCCAGCCTTTCCGTGTTCTCTTGCGTGACG
AAATAGATTCCACTCAATGCCACCACCTTCAAGCCGCAATGATCAGCCAC
CAGCACCTCGGGCACCGTGCTCATCCCCACCACCATATCATGCAGCCCAA
AATGATTCAACATTCGATCCAGCATGTCAAACACCCCCCCAGGTTGATAC
CCCCCCTTCTATCCATCGCACCCATCCAGTATTTTAAGTGCATTAACGCC
CTCCCCCACCCCTTCCTTTTTTCACACAAATTCCGCAACCCATCCTCCTC
CATTGGCGTCTCATACGACGGACCCGACACAAAAATATAACCACCCTGCT
TCAGCGCGATCCGTTTTTCTTTCGCAATTCGCCGGGTAAGCCGGCGTAAA
TTAATGTCGTACAAGTTATCACATCGTAGGAAACGAGGCCCCCAATGCTC
TAGGTTAATCCCTGCCAGCGGGTGCGTCTCGCTGCTCCGTTCCGTGTTGT
AATGATCGACCACTAACATGACATCCCCAATCTCCAAGGTCGGACTTAAA
CCCCGCGCAGCATTCGTCAGAATTAAGGTTTGTACACCCAGCTCCTTCAT
GATGCGCACGGGAAAGGCCGTGGCCTGGGTGGAATGCCCTTCGTACGTGT
GAAATCGGCCCTGCATCACGATCACGCTCACCCCGTCCACCAATCCAAAA
ATGAAGGCGCCTTCCGTGCCCATCGTCGCGGAGCATGTCGGGAAGGAAGG
GAAGAAGTCTTGGACTTCTTCATAATACACTTTCTCAGGGGCTTCGATGG
CTCGTTCAAAATCTTGCAGACGACTGCCCAGAACAATGGCAATCTCTGGA
GCGGGGTGGCTGCTTCGCGACCGCAAAAAATCAGCGACTTTACGGGCGTC
TTCGAGGTAGTAGTTCCGCTCCCTAATAGGGTGGAAAAGCTTATCAGTTG
ACATGGTCCGATTGCGGCGGGAGGGTGGTGATTCGACAGAGTGTGGTGCC
GCGGAGAGGGTACAAATGCCGCGTTGACGTAGCCACGGGGTTGGTGATGG
TGAAGCAGGGCCGATTCTGGGCAGCAGATGAAGACAGCTCGGGAAATGCC
ACGGAGCGACGGATAATGCAGCTAGATGAGCCCTTTAATACCTGTGAACT
TTTTTT back to topprotein sequence of NO05G01220.2 >NO05G01220.2-protein ID=NO05G01220.2-protein|Name=NO05G01220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MVSRRHCHSGRHFLLVLLFLALLLTAIHAVKTKPKKAPAPKKKRDSSYSN
KGKRFFWLIDPRDNTCLGALGFGMCDGSTAWVFADRREGNVLISLLENDN
SDMCLERKWCHSSVSPVSIGSCKNCGSKHWSIDRDSRGYVRVSEDKGKNC
LVRSKAGGTGKFKRFKNTVEMQHCSIGYTGLLMTEVPFSEGGFLLQAADG
* back to topmRNA from alignment at chr5:352863..356141- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01220.2 ID=NO05G01220.2|Name=NO05G01220.2|organism=Nannochloropsis oceanica|type=mRNA|length=3279bp|location=Sequence derived from alignment at chr5:352863..356141- (Nannochloropsis oceanica)
AACCCCAGCCACCTACAGCAACAGGAGCGCCAGCACTATGGTCAGTCGCC
GCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCTTCTGTTCCTCGCC
CTTCTACTAACGGCCATCCACGCCGTGAAGACCAAGCCCAAAAAAGCCCC
GGCCCCCAAGAAGAAGCGGGACTCCTCCTATTCCAACAAAGGAAAGCGCT
TCTTCTGGCTGATCGACCCGAGAGACAACACTTGCTTGGGTGCCTTAGGG
TTTGGGATGTGCGACGGGTCGACGGCATGGGTATTTGCAGACCGGCGTGA
GGGCAACGTCCTGATCTCTTTGCTCGAGAACGATAACAGCGACATGTGCC
TGGAACGGAAATGGTGTCATTCCTCCGTCTCACCAGTATCAATCGGATCG
TGCAAAAATTGTGGATCGAAGCATTGGTATGTATTAGCGCGGAGAGAAAG
GAAAGGTGGAGGGAGGGAAGAGTAGGATGCTGGTCGGGAGCAGCTGCAAG
TGAGCGTGGGTTGCCCTTTTGCAGATAATGCATTCCTTAAGCATGGAGTG
TGACGTTGCAATTAATTCCTTACTTTCGTCTTCCTAATCAAATACACAGG
TCAATCGACCGAGACAGCCGAGGCTATGTCCGTGTCTCAGAAGACAAAGG
CAAAAACTGCCTCGTGAGATCAAAGGCTGGTGGAACAGGTAAATTTAAGC
GCTTCAAAAACACAGTGGAAATGCAGCATTGTTCAATCGGCTACACTGGT
CTGCTCATGACTGAAGTTCCCTTTTCCGAGGGAGGATTTTTGCTGCAGGC
CGCAGATGGGTAAGGCTGGAGGGAGGGAAGGGAAAAGAAAGTGCGAAAGG
GTAAGAATCCCCCTAGTTTTTGTGAGATGTGCTCTTGGTTGAGCGCCACT
GGATGCATGGCGCGACAAATAGTAAGCCTTGCTCTTCCTTCCCTCACTTC
CTCCATCCCTCTCATCAACAGCATATGCTTCGATGGCGAGCGTTTCCGCC
CCTGCGATTTACGAGATCCCCTGCTCCGCTGGTCTATGGGTGTCCGTCTC
ACGGGCGGACAAGGAGAACGATTCTTCTACAAGGCGTTCCAACCGGATTT
GTGTCTGACCTGGACGAGGGGTAAGAAGGGTGTGACTGTAGGCGATTGCT
CAGGGAAGGGAGCGAAGTCATGGAGCATAAAAAGAGGGCAGCTGGCTCTG
GGTGATGGGAAAATGTGCGTAGTCAGAAATTTTGACAACACCGCAGGAAT
CGCGAAATGCACCGAGGCATTTGAGTATCTGAGTGTGGTGCCGCATGATC
CGACGGCGGGTAAATTGACGCAGGGCGGTCCTGTGACAGCAGGAATAGAA
CTTGGGTAGCGAAGGGGGGAGGAAGAGTAAACCGTATGTGTCATATGTAA
TAATGCAGGAGGAAGGGGAGCAAAAGAACGCAAAAGAAGGGGATAGACGA
GGAGCACAAATAAAAAGGGCATAAATTGCGAAGTTGAGATATCCTCGACT
CTGTCTCGAAGCCAAGGCCATGTATCGTCATTCTTTTGTTCTCGATCCGT
GTTTCAACACCCATACACAACGCGACCCGCGTGGAGTGCAGCGCAGGGAG
CAGAGCCGCTTACATCAACAATGACAAGAAGAAATTTATACAGAGTTGTA
CATAGAAACACACTGAATTCATCGCCGCCAATACCACGCACGCCGCGCTT
GTTTCCTGTATCTCTTTCCCTCTATTTACCTCCCGTGCACCCCCTTCAAT
TTCTGCCTCCAATTTCATTGCATCTTCGAACTATCTCAGCTTCCTCCTCT
TCTTCCTCCTTCCGTCCGCCCTCTTCCGCCTGTCTTCTCCTATCGTCGCC
TTCTTTCAGCTACCACAGTGACCAGCACACTAACCGCCATCCCTACGCCC
ATCACGCCTACTATCACCTTGTTCCACGACACGCACAACGTGGTCGGAAA
CCTCCACCGGGCAATATCTGCCACATCGAAATCCATGGCTATATCCCTCG
TGTCTCCCAAGGACTGCACCAACCCTCTTAACAACGCCGTCATCTTAGGG
GCGATTTCCCCCTGTCGATGCTCCTCCTCCCTCCTTAGTTTCATCTCATA
CGCCACCCGCTTATCGGTATCATATTCATAATGCGGAATCCCAGCCAGCC
TTTCCGTGTTCTCTTGCGTGACGAAATAGATTCCACTCAATGCCACCACC
TTCAAGCCGCAATGATCAGCCACCAGCACCTCGGGCACCGTGCTCATCCC
CACCACCATATCATGCAGCCCAAAATGATTCAACATTCGATCCAGCATGT
CAAACACCCCCCCAGGTTGATACCCCCCCTTCTATCCATCGCACCCATCC
AGTATTTTAAGTGCATTAACGCCCTCCCCCACCCCTTCCTTTTTTCACAC
AAATTCCGCAACCCATCCTCCTCCATTGGCGTCTCATACGACGGACCCGA
CACAAAAATATAACCACCCTGCTTCAGCGCGATCCGTTTTTCTTTCGCAA
TTCGCCGGGTAAGCCGGCGTAAATTAATGTCGTACAAGTTATCACATCGT
AGGAAACGAGGCCCCCAATGCTCTAGGTTAATCCCTGCCAGCGGGTGCGT
CTCGCTGCTCCGTTCCGTGTTGTAATGATCGACCACTAACATGACATCCC
CAATCTCCAAGGTCGGACTTAAACCCCGCGCAGCATTCGTCAGAATTAAG
GTTTGTACACCCAGCTCCTTCATGATGCGCACGGGAAAGGCCGTGGCCTG
GGTGGAATGCCCTTCGTACGTGTGAAATCGGCCCTGCATCACGATCACGC
TCACCCCGTCCACCAATCCAAAAATGAAGGCGCCTTCCGTGCCCATCGTC
GCGGAGCATGTCGGGAAGGAAGGGAAGAAGTCTTGGACTTCTTCATAATA
CACTTTCTCAGGGGCTTCGATGGCTCGTTCAAAATCTTGCAGACGACTGC
CCAGAACAATGGCAATCTCTGGAGCGGGGTGGCTGCTTCGCGACCGCAAA
AAATCAGCGACTTTACGGGCGTCTTCGAGGTAGTAGTTCCGCTCCCTAAT
AGGGTGGAAAAGCTTATCAGTTGACATGGTCCGATTGCGGCGGGAGGGTG
GTGATTCGACAGAGTGTGGTGCCGCGGAGAGGGTACAAATGCCGCGTTGA
CGTAGCCACGGGGTTGGTGATGGTGAAGCAGGGCCGATTCTGGGCAGCAG
ATGAAGACAGCTCGGGAAATGCCACGGAGCGACGGATAATGCAGCTAGAT
GAGCCCTTTAATACCTGTGAACTTTTTTT back to topCoding sequence (CDS) from alignment at chr5:352863..356141- >NO05G01220.2 ID=NO05G01220.2|Name=NO05G01220.2|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr5:352863..356141- (Nannochloropsis oceanica)
ATGGTCAGTCGCCGCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCT
TCTGTTCCTCGCCCTTCTACTAACGGCCATCCACGCCGTGAAGACCAAGC
CCAAAAAAGCCCCGGCCCCCAAGAAGAAGCGGGACTCCTCCTATTCCAAC
AAAGGAAAGCGCTTCTTCTGGCTGATCGACCCGAGAGACAACACTTGCTT
GGGTGCCTTAGGGTTTGGGATGTGCGACGGGTCGACGGCATGGGTATTTG
CAGACCGGCGTGAGGGCAACGTCCTGATCTCTTTGCTCGAGAACGATAAC
AGCGACATGTGCCTGGAACGGAAATGGTGTCATTCCTCCGTCTCACCAGT
ATCAATCGGATCGTGCAAAAATTGTGGATCGAAGCATTGGTCAATCGACC
GAGACAGCCGAGGCTATGTCCGTGTCTCAGAAGACAAAGGCAAAAACTGC
CTCGTGAGATCAAAGGCTGGTGGAACAGGTAAATTTAAGCGCTTCAAAAA
CACAGTGGAAATGCAGCATTGTTCAATCGGCTACACTGGTCTGCTCATGA
CTGAAGTTCCCTTTTCCGAGGGAGGATTTTTGCTGCAGGCCGCAGATGGG
TAA back to top
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