NO05G01160, NO05G01160 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01160
Unique Name	NO05G01160
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2240
Alignment location	chr5:339428..341667 -

Link to JBrowse

Properties


Property Name	Value
Description	Solute carrier family 25 (Mitochondrial carrier peroxisomal membrane 34kda) member 17

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:339428..341667 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023395	Mt_carrier_dom
IPR018108	Mitochondrial_sb/sol_carrier

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: EWM28167.1 (solute carrier family 25 (mitochondrial carrier peroxisomal membrane 34kda) member 17 [Nannochloropsis gaditana])

HSP 1 Score: 491.1 bits (1263), Expect = 3.700e-135
Identity = 270/470 (57.45%), Postives = 325/470 (69.15%), Query Frame = 0

Query:    1 MAS-HDNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGATMGQDSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKDQGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGK------------VAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKRG 458
            MAS  D+ GVK CPMPVR  +PA++     S+ P TV+   +  +                                      + ATMG++SLIHALAGGLGS++ALALTYPLDQ+RTFQQVND  EDDEYINHGG SPL  QETCP+T  ARLA L RP+R+A+V+VQ+HG  ALYRG++PVLISMGLSNA+FFFV++LLKA+L+RYRQ+TGKSLGYFG+LAT TIAGVLNV+LTTPLWVA MRAKLS  QGW+I  IM +I+++EGV++LW+G +PSLLLVCNPVLQHFVYD LKRRTL  RR +            +  +    AAVALTSLEAFYFGA+GKFVATIVSYPLQVAQS                                   + E +LLA+SA  YTGT+DCL+DLW RKG+AGLFQG+ESKLLQTV+TSAFMFLAYENI+K TK  ++V  R+  G
Sbjct:    1 MASREDSAGVKTCPMPVRPPQPAATSEILESNSPITVL---SMPSPLRDHELRPPAAKLAVTRPALLPEGNHPVNEKSSPGEQNTATMGRESLIHALAGGLGSALALALTYPLDQVRTFQQVNDTPEDDEYINHGGSSPLLNQETCPATSLARLAFLFRPYRTASVMVQRHGAGALYRGMVPVLISMGLSNAVFFFVSNLLKAILSRYRQRTGKSLGYFGHLATGTIAGVLNVVLTTPLWVAGMRAKLSSAQGWNILTIMAKIWKDEGVMALWSGMIPSLLLVCNPVLQHFVYDVLKRRTLATRRVRSSQLSFPPSSMPIGRSEVTGAAVALTSLEAFYFGAVGKFVATIVSYPLQVAQS----------RLRQQSQKSETDGNNATTSKEEGKTDWERELLAQSANHYTGTLDCLLDLWRRKGVAGLFQGVESKLLQTVVTSAFMFLAYENIFKVTKGVLDVTDRKGLG 457

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_007565795.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Poecilia formosa])

HSP 1 Score: 169.1 bits (427), Expect = 3.200e-38
Identity = 133/365 (36.44%), Postives = 179/365 (49.04%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITA--------IMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKAT 445
            +SL+HA++G +GS  A+ + +PLD  R   QV++N +                        A+  P +        +V++ GL A YRG  PV+ S+  SN ++F+    +KA   + RQ T  +      L    +AGV+NVLLTTPLWV + R KL  SK    DI             +I R+EGV +LWNGT PSLLLV NP +Q  VY+ LKR+    RRG         A+  L+SLEAF  GA+ K VATIV+YPLQ  QS                                     E+  L  S     G    LV+   + G++GLF+GLE+KLLQTVLT+A MFL YE I  +T
Sbjct:    9 ESLVHAVSGAVGSVTAMTVFFPLDTARLRLQVDENRK------------------------AKSTPAI-----LADIVKEEGLLAPYRGWFPVICSLCCSNFVYFYCFHWMKASWLKSRQSTPST-----DLIVGIVAGVINVLLTTPLWVVNTRLKLQGSKFHNSDIRPTNYSGILDAFKQIVRKEGVGALWNGTFPSLLLVLNPAIQFMVYEGLKRQ---LRRG---------ASRELSSLEAFIIGAVAKAVATIVTYPLQTMQSVLRFGQVNTPT--------------------------EKSTLLSSLQTLQG---LLVNRARKHGVSGLFKGLEAKLLQTVLTAALMFLLYEKIASST 298

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_005527703.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Pseudopodoces humilis] >XP_015484581.1 PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Parus major])

HSP 1 Score: 168.7 bits (426), Expect = 4.200e-38
Identity = 133/378 (35.19%), Postives = 179/378 (47.35%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKR 457
            +SL+HA++G +GS  A+ + +PLD  R   QV++  +                +T P       A LL        ++++ GL A YRG  PV+ S+  SN ++F+  + LKA+  +     TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     R        I R+EGVL+LWNGT PSLLLV NP +Q   Y+  KR+ L  R             V LTSL+AF  GAI K VAT ++YPLQ  QS                                           R+ G     +  L     R GL GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R
Sbjct:   39 ESLVHAVSGAVGSMTAMTVFFPLDTARLRLQVDEKRK---------------SKTTP-------AVLLE-------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKD------LVLGVVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYRGIIDAFHQIVRDEGVLALWNGTFPSLLLVFNPAIQFMFYEGFKRKLLKKR-------------VQLTSLDAFVIGAIAKAVATTLTYPLQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLQQRVRRFGLMGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKHSR 336

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_014838129.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Poecilia mexicana])

HSP 1 Score: 168.3 bits (425), Expect = 5.500e-38
Identity = 133/365 (36.44%), Postives = 178/365 (48.77%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITA--------IMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKAT 445
            +SL+HA++G +GS  A+ + +PLD  R   QV++N +                        A+  P +        +V++ GL A YRG  PV+ S+  SN ++F+    +KA   + RQ T  +      L    +AGV+NVLLTTPLWV + R KL  SK    DI             +I R+EGV +LWNGT PSLLLV NP +Q  VY+ LKR+    RRG         A+  L+SLEAF  GA+ K VATIV+YPLQ  QS                                     E+  L  S     G    LV+   + G+ GLF+GLE+KLLQTVLT+A MFL YE I  +T
Sbjct:    9 ESLVHAVSGAVGSVTAMTVFFPLDTARLRLQVDENRK------------------------AKSTPAI-----LADIVKEEGLLAPYRGWFPVICSLCCSNFVYFYCFHWMKASWLKSRQSTPST-----DLIVGIVAGVINVLLTTPLWVVNTRLKLQGSKFHNSDIRPTNYSGILDAFKQIVRKEGVGALWNGTFPSLLLVLNPAIQFMVYEGLKRQ---LRRG---------ASRELSSLEAFIIGAVAKAVATIVTYPLQTMQSVLRFGQVNTPT--------------------------EKSTLLSSLQTLQG---LLVNRARKHGVLGLFKGLEAKLLQTVLTAALMFLLYEKIASST 298

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_014879334.1 (PREDICTED: peroxisomal membrane protein PMP34 [Poecilia latipinna])

HSP 1 Score: 167.2 bits (422), Expect = 1.200e-37
Identity = 132/365 (36.16%), Postives = 178/365 (48.77%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITA--------IMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKAT 445
            +SL+HA++G +GS  A+ + +PLD  R   QV++N +                        A+  P +        +V++ GL A YRG  PV+ S+  SN ++F+    +KA   + RQ T  +      L    +AGV+NVLLTTPLWV + R KL  SK    DI             +I R+EGV +LWNGT PSLLLV NP +Q  VY+ LKR+    RRG         A+  L+SLEAF  GA+ K VAT V+YPLQ  QS                                     E+  L  S     G    LV+   + G++GLF+GLE+KLLQTVLT+A MFL YE I  +T
Sbjct:    9 ESLVHAVSGAVGSVTAMTVFFPLDTARLRLQVDENRK------------------------AKSTPAI-----LADIVKEEGLLAPYRGWFPVICSLCCSNFVYFYCFHWMKASWLKSRQSTPST-----DLIVGIVAGVINVLLTTPLWVVNTRLKLQGSKFHNSDIRPTNYSGILDAFKQIVRKEGVGALWNGTFPSLLLVLNPAIQFMVYEGLKRQ---LRRG---------ASRELSSLEAFIIGAVAKAVATTVTYPLQTMQSVLRFGQVNTPT--------------------------EKSTLLSSLQTLQG---LLVNRARKHGVSGLFKGLEAKLLQTVLTAALMFLLYEKIASST 298

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_016060796.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Miniopterus natalensis])

HSP 1 Score: 167.2 bits (422), Expect = 1.200e-37
Identity = 128/383 (33.42%), Postives = 179/383 (46.74%), Query Frame = 0

Query:   85 ATMGQDSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKR 457
            + +  +SL+HA+AG +GS  A+ + +PLD  R   QV++  +                    +T    L            ++++ GL A YRG  PV+ S+  SN ++F+  + LKAV  +  R  TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     +        I R+EG+LSLWNGT PSLLLV NP +Q   Y+ LKRR L  R             + L+SL+ F  GA+ K +AT V+YP+Q  QS                                           R+ G     +  L     R G+ GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R
Sbjct:    3 SVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKS------------------KTTHMVLLE-----------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQRSTTGKD------LVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGILSLWNGTFPSLLLVFNPAIQFMFYEGLKRRLLKKR-------------MKLSSLDVFIIGAVAKAIATTVTYPMQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKSAR 305

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_002197796.1 (PREDICTED: peroxisomal membrane protein PMP34 [Taeniopygia guttata])

HSP 1 Score: 166.4 bits (420), Expect = 2.100e-37
Identity = 131/378 (34.66%), Postives = 179/378 (47.35%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKR 457
            +SL+HA++G +GS  A+ + +PLD  R   QV++  +                +T P       A LL        ++++ GL A YRG  PV+ S+  SN ++F+  + LKA+  +     TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     R        I R+EGVL+LWNGT PSLLLV NP +Q   Y+  KR+ L  +             + LTSL+AF  GAI K VAT ++YPLQ  QS                                           R+ G     +  L     R GL GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R
Sbjct:   39 ESLVHAVSGAVGSMTAMTVFFPLDTARLRLQVDEKRK---------------SKTTP-------AVLLE-------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKD------LVLGVVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYRGIIDAFHQIVRDEGVLALWNGTFPSLLLVFNPAIQFMFYEGFKRKLLKKQ-------------LQLTSLDAFVIGAIAKAVATTLTYPLQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLQQRVRRFGLVGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKHSR 336

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_017683117.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Lepidothrix coronata])

HSP 1 Score: 166.4 bits (420), Expect = 2.100e-37
Identity = 131/378 (34.66%), Postives = 179/378 (47.35%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKR 457
            +SL+HA++G +GS  A+ + +PLD  R   QV++  +                +T P       A LL        ++++ GL A YRG  PV+ S+  SN ++F+  + LKA+  +     TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     R        I R+EGVL+LWNGT PSLLLV NP +Q   Y+  KR+ L  +             + LTSL+AF  GAI K VAT ++YPLQ  QS                                           R+ G     +  L     R GL GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R
Sbjct:   40 ESLVHAVSGAVGSMTAMTVFFPLDTARLRLQVDEKRK---------------SKTTP-------AVLLE-------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKD------LVLGVVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYRGIIDAFHQIIRDEGVLALWNGTFPSLLLVFNPAIQFMFYEGFKRKLLKKQ-------------LQLTSLDAFVIGAIAKAVATTLTYPLQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLQQRVRRFGLVGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKHSR 337

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_017936286.1 (PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Manacus vitellinus])

HSP 1 Score: 166.4 bits (420), Expect = 2.100e-37
Identity = 131/378 (34.66%), Postives = 179/378 (47.35%), Query Frame = 0

Query:   90 DSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKR 457
            +SL+HA++G +GS  A+ + +PLD  R   QV++  +                +T P       A LL        ++++ GL A YRG  PV+ S+  SN ++F+  + LKA+  +     TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     R        I R+EGVL+LWNGT PSLLLV NP +Q   Y+  KR+ L  +             + LTSL+AF  GAI K VAT ++YPLQ  QS                                           R+ G     +  L     R GL GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R
Sbjct:    8 ESLVHAVSGAVGSMTAMTVFFPLDTARLRLQVDEKRK---------------SKTTP-------AVLLE-------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKD------LVLGVVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYRGIIDAFHQIIRDEGVLALWNGTFPSLLLVFNPAIQFMFYEGFKRKLLKKQ-------------LQLTSLDAFVIGAIAKAVATTLTYPLQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLQQRVRRFGLVGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKHSR 305

[Close]

BLAST of NO05G01160 vs. NCBI_GenBank
Match: XP_003989333.1 (peroxisomal membrane protein PMP34 isoform X1 [Felis catus] >XP_007079494.1 PREDICTED: peroxisomal membrane protein PMP34 [Panthera tigris altaica] >XP_019302531.1 PREDICTED: peroxisomal membrane protein PMP34 isoform X1 [Panthera pardus])

HSP 1 Score: 165.6 bits (418), Expect = 3.600e-37
Identity = 128/385 (33.25%), Postives = 180/385 (46.75%), Query Frame = 0

Query:   85 ATMGQDSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTR-YRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKL--SKDQGWDITAIMLR--------IYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKRGR 459
            + +  +SL+HA+AG +GS  A+ + +PLD  R   QV++  +                    +T    L            ++++ GL A YRG  PV+ S+  SN ++F+  + LKAV  +  R  TGK       L    +AGV+NVLLTTPLWV + R KL  +K +  DI     +        I R+EG+L+LWNGT PSLLLV NP +Q   Y+ LKR+ L  R             + L+SL+ F  GAI K +AT V+YP+Q  QS                                           R+ G     +  L     R G+ GL++GLE+KLLQTVLT+A MFL YE +  AT  F  +G +  R R
Sbjct:    3 SVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKS------------------KTTHMVLLE-----------IIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQRSTTGKD------LVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKR-------------MKLSSLDVFIIGAISKAIATTVTYPMQTVQSILRFGRHRLNPEN------------------------------RTLGSLRNVLYLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAAT--FTVMGLKNVRKR 307

The following BLAST results are available for this feature:

BLAST of NO05G01160 vs. NCBI_GenBank

BLAST of NO05G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28167.1	3.700e-135	57.45	solute carrier family 25 (mitochondrial carrier pe...	[more]
XP_007565795.1	3.200e-38	36.44	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_005527703.1	4.200e-38	35.19	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_014838129.1	5.500e-38	36.44	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_014879334.1	1.200e-37	36.16	PREDICTED: peroxisomal membrane protein PMP34 [Poe...	[more]
XP_016060796.1	1.200e-37	33.42	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_002197796.1	2.100e-37	34.66	PREDICTED: peroxisomal membrane protein PMP34 [Tae...	[more]
XP_017683117.1	2.100e-37	34.66	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_017936286.1	2.100e-37	34.66	PREDICTED: peroxisomal membrane protein PMP34 isof...	[more]
XP_003989333.1	3.600e-37	33.25	peroxisomal membrane protein PMP34 isoform X1 [Fel...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL087	nonsL087	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL086	nonsL086	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR118	ngnoR118	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003752	NSK003752	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G01160.1	NO05G01160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583774	gene_2908	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100004g41	gene2302	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G01160.1	NO05G01160.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G01160 ID=NO05G01160|Name=NO05G01160|organism=Nannochloropsis oceanica|type=gene|length=2240bp
ACCAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCC
CATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAA
GTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACA
CTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCAC
GACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTG
CCGGGCAAgtaagtactgtaggaaggttgggaaagaatgtgcgatgcaca
gtatatgggccccgcacttcacctaatgctggctgcctactgcatcccag
aatcagaacacaaatttcaaccaactcattccttctcactcactctctct
tcccccctcttgtttattttccctattcattccgttcccccccccatcag
AGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGG
TTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCC
GCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAAC
CACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCA
GTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCC
TGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTC
CTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTT
GCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTG
GGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTG
TTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAA
AGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGG
AAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTG
TGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAAC
GCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAG
CTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAG
TTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCT
CCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTA
CTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTT
GAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGAC
TGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGT
TTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTC
ATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGA
AGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGAGGAAGGGA
GGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCAGGGAAAGT
AAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATGTACAGTCA
CGTGTGCGGCCAAAGATCGACAAAAACTGTCAACGATGACGCGCGCTGAT
GCGTGATTCCCAGCATCTCCTGTCTTTCCTCCTCCAAGATCATGCCCCGG
CCCCTGATCCTTCTCCTCGTCAGGCTGTGCATTTCGTTTTTCTCGACATT
TTTCTTTTCGTTTTTACTCAAAATCGGTTGTTGTGTCCTTCTGTTCTGTG
CTCGCTGTTTTCTCTTGCTCGCCCGCTTAAAATGCGTGCTTCCTCTCACA
GCTGCCGATGCTACGGCTGCTGCGCGTGGATACATACATCTCTATCTGCT
GGCCTCTTCTCCCTAACTCCCCTCTTTCTCCTCGTCACGCGAGATTTCCT
TCCATTAGATTATTATATTGCATTTCTCCCTCGCTGCTTTTCATGTTCAC
ACCACACTTTCCTCTCGCGCTCGCTCTTCCTCTTGTTGTTGCTGCTCCTA
GCGTTGCTGCTGTCGTCGATCAGTTGTGCATTCAAACACCCTTAATCTCA
CACCTCTTCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC

protein sequence of NO05G01160.1

>NO05G01160.1-protein ID=NO05G01160.1-protein|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MASHDNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAAT
TTSAPATGASPTTTMTTASTSYPAATSARAGQSGATMGQDSLIHALAGGL
GSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQW
ARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLL
KAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKD
QGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTL
TARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLR
QQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTV
DCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEV
GAREKRGRLV*

Synonyms

Publications