NO05G01160.1, NO05G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01160.1
Unique NameNO05G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2048
Alignment locationchr5:339428..341667 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:339428..341667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01160.1 vs.
Match: EWM28167.1 (solute carrier family 25 (mitochondrial carrier peroxisomal membrane 34kda) member 17 [Nannochloropsis gaditana])

HSP 1 Score: 512.7 bits (1319), Expect = 1.200e-141
Identity = 287/471 (60.93%), Postives = 351/471 (74.52%), Query Frame = 0
Query:    1 MASH-DNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAATTTSAPATGASPTTTMTTASTSYPAATSARAG-QSGATMGQDSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKDQGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGK------------VAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLRQQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKRG 458
            MAS  D+ GVK CPMPVR  +PA++     S+ P TV+    +  + L       PA   + T        ++P    +  G Q+ ATMG++SLIHALAGGLGS++ALALTYPLDQ+RTFQQVND  EDDEYINHGG SPL  QETCP+T  ARLA L RP+R+A+V+VQ+HG  ALYRG++PVLISMGLSNA+FFFV++LLKA+L+RYRQ+TGKSLGYFG+LAT TIAGVLNV+LTTPLWVA MRAKLS  QGW+I  IM +I+++EGV++LW+G +PSLLLVCNPVLQHFVYD LKRRTL  RR +            +  +    AAVALTSLEAFYFGA+GKFVATIVSYPLQVAQSRLRQQSQK + + ++AT           +      + E +LLA+SA  YTGT+DCL+DLW RKG+AGLFQG+ESKLLQTV+TSAFMFLAYENI+K TK  ++V  R+  G
Sbjct:    1 MASREDSAGVKTCPMPVRPPQPAATSEILESNSPITVL----SMPSPLRDHELRPPAAKLAVTRPALLPEGNHPVNEKSSPGEQNTATMGRESLIHALAGGLGSALALALTYPLDQVRTFQQVNDTPEDDEYINHGGSSPLLNQETCPATSLARLAFLFRPYRTASVMVQRHGAGALYRGMVPVLISMGLSNAVFFFVSNLLKAILSRYRQRTGKSLGYFGHLATGTIAGVLNVVLTTPLWVAGMRAKLSSAQGWNILTIMAKIWKDEGVMALWSGMIPSLLLVCNPVLQHFVYDVLKRRTLATRRVRSSQLSFPPSSMPIGRSEVTGAAVALTSLEAFYFGAVGKFVATIVSYPLQVAQSRLRQQSQKSETDGNNAT----------TSKEEGKTDWERELLAQSANHYTGTLDCLLDLWRRKGVAGLFQGVESKLLQTVVTSAFMFLAYENIFKVTKGVLDVTDRKGLG 457          
The following BLAST results are available for this feature:
BLAST of NO05G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28167.11.200e-14160.93solute carrier family 25 (mitochondrial carrier pe... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01160NO05G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01160.1NO05G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01160.1.cds1NO05G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01160.1.cds2NO05G01160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2048bp
ACCAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCC
CATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAA
GTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACA
CTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCAC
GACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTG
CCGGGCAAAGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTC
GCAGGCGGTTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGA
CCAAATCCGCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGT
ATATCAACCACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCC
TCCACCCAGTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGC
CACTGTCCTGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTA
TCCCCGTCCTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTG
AACAGCTTGCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAA
ATCCCTTGGGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGC
TGAACGTGTTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAG
CTGAGTAAAGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTA
TCGGGAGGAAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCC
TCTTGGTGTGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAG
CGTCGAACGCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGC
AGCAGCAGCTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCA
TTGGCAAGTTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAG
AGCCGGCTCCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGC
TACTGCTACTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTG
CTGCTGTTGAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTAT
ACCGGGACTGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGC
GGGTTTGTTTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCA
GTGCCTTCATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCAT
TTTGTTGAAGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGA
GGAAGGGAGGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCA
GGGAAAGTAAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATG
TACAGTCACGTGTGCGGCCAAAGATCGACAAAAACTGTCAACGATGACGC
GCGCTGATGCGTGATTCCCAGCATCTCCTGTCTTTCCTCCTCCAAGATCA
TGCCCCGGCCCCTGATCCTTCTCCTCGTCAGGCTGTGCATTTCGTTTTTC
TCGACATTTTTCTTTTCGTTTTTACTCAAAATCGGTTGTTGTGTCCTTCT
GTTCTGTGCTCGCTGTTTTCTCTTGCTCGCCCGCTTAAAATGCGTGCTTC
CTCTCACAGCTGCCGATGCTACGGCTGCTGCGCGTGGATACATACATCTC
TATCTGCTGGCCTCTTCTCCCTAACTCCCCTCTTTCTCCTCGTCACGCGA
GATTTCCTTCCATTAGATTATTATATTGCATTTCTCCCTCGCTGCTTTTC
ATGTTCACACCACACTTTCCTCTCGCGCTCGCTCTTCCTCTTGTTGTTGC
TGCTCCTAGCGTTGCTGCTGTCGTCGATCAGTTGTGCATTCAAACACCCT
TAATCTCACACCTCTTCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC
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protein sequence of NO05G01160.1

>NO05G01160.1-protein ID=NO05G01160.1-protein|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MASHDNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAAT
TTSAPATGASPTTTMTTASTSYPAATSARAGQSGATMGQDSLIHALAGGL
GSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQW
ARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLL
KAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKD
QGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTL
TARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLR
QQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTV
DCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEV
GAREKRGRLV*
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mRNA from alignment at chr5:339428..341667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at chr5:339428..341667- (Nannochloropsis oceanica)
ACCAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCC CATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAA GTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACA CTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCAC GACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTG CCGGGCAAGTAAGTACTGTAGGAAGGTTGGGAAAGAATGTGCGATGCACA GTATATGGGCCCCGCACTTCACCTAATGCTGGCTGCCTACTGCATCCCAG AATCAGAACACAAATTTCAACCAACTCATTCCTTCTCACTCACTCTCTCT TCCCCCCTCTTGTTTATTTTCCCTATTCATTCCGTTCCCCCCCCCATCAG AGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGG TTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCC GCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAAC CACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCA GTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCC TGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTC CTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTT GCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTG GGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTG TTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAA AGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGG AAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTG TGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAAC GCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAG CTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAG TTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCT CCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTA CTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTT GAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGAC TGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGT TTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTC ATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGA AGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGAGGAAGGGA GGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCAGGGAAAGT AAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATGTACAGTCA CGTGTGCGGCCAAAGATCGACAAAAACTGTCAACGATGACGCGCGCTGAT GCGTGATTCCCAGCATCTCCTGTCTTTCCTCCTCCAAGATCATGCCCCGG CCCCTGATCCTTCTCCTCGTCAGGCTGTGCATTTCGTTTTTCTCGACATT TTTCTTTTCGTTTTTACTCAAAATCGGTTGTTGTGTCCTTCTGTTCTGTG CTCGCTGTTTTCTCTTGCTCGCCCGCTTAAAATGCGTGCTTCCTCTCACA GCTGCCGATGCTACGGCTGCTGCGCGTGGATACATACATCTCTATCTGCT GGCCTCTTCTCCCTAACTCCCCTCTTTCTCCTCGTCACGCGAGATTTCCT TCCATTAGATTATTATATTGCATTTCTCCCTCGCTGCTTTTCATGTTCAC ACCACACTTTCCTCTCGCGCTCGCTCTTCCTCTTGTTGTTGCTGCTCCTA GCGTTGCTGCTGTCGTCGATCAGTTGTGCATTCAAACACCCTTAATCTCA CACCTCTTCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at chr5:339428..341667-

>NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr5:339428..341667- (Nannochloropsis oceanica)
ATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCCCATGCCAGTGCG
AAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAAGTGACGAGCCTG
AAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACACTCGCAGCGACG
ACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCACGACGATGACAAC
GGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTGCCGGGCAAAGCG
GTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGGTTTA
GGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCCGCAC
GTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAACCACG
GCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCAGTGG
GCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCCTGGT
ACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTCCTCA
TCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTTGCTC
AAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTGGGTA
TTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTGTTGT
TGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAAAGAT
CAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGGAAGG
GGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTGTGCA
ACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAACGCTC
ACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAGCTGT
GGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAGTTTG
TGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCTCCGG
CAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTACTAT
TGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTTGAGG
GGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGACTGTG
GATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGTTTCA
GGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTCATGT
TTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGAAGTT
GGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAG
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Synonyms
Publications