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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:339428..341667 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01160.1 vs.
Match: EWM28167.1 (solute carrier family 25 (mitochondrial carrier peroxisomal membrane 34kda) member 17 [Nannochloropsis gaditana]) HSP 1 Score: 512.7 bits (1319), Expect = 1.200e-141 Identity = 287/471 (60.93%), Postives = 351/471 (74.52%), Query Frame = 0
Query: 1 MASH-DNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAATTTSAPATGASPTTTMTTASTSYPAATSARAG-QSGATMGQDSLIHALAGGLGSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQWARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLLKAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKDQGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTLTARRGK------------VAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLRQQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTVDCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEVGAREKRG 458
MAS D+ GVK CPMPVR +PA++ S+ P TV+ + + L PA + T ++P + G Q+ ATMG++SLIHALAGGLGS++ALALTYPLDQ+RTFQQVND EDDEYINHGG SPL QETCP+T ARLA L RP+R+A+V+VQ+HG ALYRG++PVLISMGLSNA+FFFV++LLKA+L+RYRQ+TGKSLGYFG+LAT TIAGVLNV+LTTPLWVA MRAKLS QGW+I IM +I+++EGV++LW+G +PSLLLVCNPVLQHFVYD LKRRTL RR + + + AAVALTSLEAFYFGA+GKFVATIVSYPLQVAQSRLRQQSQK + + ++AT + + E +LLA+SA YTGT+DCL+DLW RKG+AGLFQG+ESKLLQTV+TSAFMFLAYENI+K TK ++V R+ G
Sbjct: 1 MASREDSAGVKTCPMPVRPPQPAATSEILESNSPITVL----SMPSPLRDHELRPPAAKLAVTRPALLPEGNHPVNEKSSPGEQNTATMGRESLIHALAGGLGSALALALTYPLDQVRTFQQVNDTPEDDEYINHGGSSPLLNQETCPATSLARLAFLFRPYRTASVMVQRHGAGALYRGMVPVLISMGLSNAVFFFVSNLLKAILSRYRQRTGKSLGYFGHLATGTIAGVLNVVLTTPLWVAGMRAKLSSAQGWNILTIMAKIWKDEGVMALWSGMIPSLLLVCNPVLQHFVYDVLKRRTLATRRVRSSQLSFPPSSMPIGRSEVTGAAVALTSLEAFYFGAVGKFVATIVSYPLQVAQSRLRQQSQKSETDGNNAT----------TSKEEGKTDWERELLAQSANHYTGTLDCLLDLWRRKGVAGLFQGVESKLLQTVVTSAFMFLAYENIFKVTKGVLDVTDRKGLG 457
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2048bp ACCAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCC CATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAA GTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACA CTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCAC GACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTG CCGGGCAAAGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTC GCAGGCGGTTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGA CCAAATCCGCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGT ATATCAACCACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCC TCCACCCAGTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGC CACTGTCCTGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTA TCCCCGTCCTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTG AACAGCTTGCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAA ATCCCTTGGGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGC TGAACGTGTTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAG CTGAGTAAAGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTA TCGGGAGGAAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCC TCTTGGTGTGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAG CGTCGAACGCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGC AGCAGCAGCTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCA TTGGCAAGTTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAG AGCCGGCTCCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGC TACTGCTACTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTG CTGCTGTTGAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTAT ACCGGGACTGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGC GGGTTTGTTTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCA GTGCCTTCATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCAT TTTGTTGAAGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGA GGAAGGGAGGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCA GGGAAAGTAAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATG TACAGTCACGTGTGCGGCCAAAGATCGACAAAAACTGTCAACGATGACGC GCGCTGATGCGTGATTCCCAGCATCTCCTGTCTTTCCTCCTCCAAGATCA TGCCCCGGCCCCTGATCCTTCTCCTCGTCAGGCTGTGCATTTCGTTTTTC TCGACATTTTTCTTTTCGTTTTTACTCAAAATCGGTTGTTGTGTCCTTCT GTTCTGTGCTCGCTGTTTTCTCTTGCTCGCCCGCTTAAAATGCGTGCTTC CTCTCACAGCTGCCGATGCTACGGCTGCTGCGCGTGGATACATACATCTC TATCTGCTGGCCTCTTCTCCCTAACTCCCCTCTTTCTCCTCGTCACGCGA GATTTCCTTCCATTAGATTATTATATTGCATTTCTCCCTCGCTGCTTTTC ATGTTCACACCACACTTTCCTCTCGCGCTCGCTCTTCCTCTTGTTGTTGC TGCTCCTAGCGTTGCTGCTGTCGTCGATCAGTTGTGCATTCAAACACCCT TAATCTCACACCTCTTCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC back to topprotein sequence of NO05G01160.1 >NO05G01160.1-protein ID=NO05G01160.1-protein|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp MASHDNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAAT TTSAPATGASPTTTMTTASTSYPAATSARAGQSGATMGQDSLIHALAGGL GSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQW ARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLL KAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKD QGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTL TARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLR QQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTV DCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEV GAREKRGRLV* back to topmRNA from alignment at chr5:339428..341667- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2240bp|location=Sequence derived from alignment at chr5:339428..341667- (Nannochloropsis oceanica) ACCAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCC
CATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAA
GTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACA
CTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCAC
GACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTG
CCGGGCAAGTAAGTACTGTAGGAAGGTTGGGAAAGAATGTGCGATGCACA
GTATATGGGCCCCGCACTTCACCTAATGCTGGCTGCCTACTGCATCCCAG
AATCAGAACACAAATTTCAACCAACTCATTCCTTCTCACTCACTCTCTCT
TCCCCCCTCTTGTTTATTTTCCCTATTCATTCCGTTCCCCCCCCCATCAG
AGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGG
TTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCC
GCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAAC
CACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCA
GTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCC
TGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTC
CTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTT
GCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTG
GGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTG
TTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAA
AGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGG
AAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTG
TGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAAC
GCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAG
CTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAG
TTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCT
CCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTA
CTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTT
GAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGAC
TGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGT
TTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTC
ATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGA
AGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGAGGAAGGGA
GGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCAGGGAAAGT
AAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATGTACAGTCA
CGTGTGCGGCCAAAGATCGACAAAAACTGTCAACGATGACGCGCGCTGAT
GCGTGATTCCCAGCATCTCCTGTCTTTCCTCCTCCAAGATCATGCCCCGG
CCCCTGATCCTTCTCCTCGTCAGGCTGTGCATTTCGTTTTTCTCGACATT
TTTCTTTTCGTTTTTACTCAAAATCGGTTGTTGTGTCCTTCTGTTCTGTG
CTCGCTGTTTTCTCTTGCTCGCCCGCTTAAAATGCGTGCTTCCTCTCACA
GCTGCCGATGCTACGGCTGCTGCGCGTGGATACATACATCTCTATCTGCT
GGCCTCTTCTCCCTAACTCCCCTCTTTCTCCTCGTCACGCGAGATTTCCT
TCCATTAGATTATTATATTGCATTTCTCCCTCGCTGCTTTTCATGTTCAC
ACCACACTTTCCTCTCGCGCTCGCTCTTCCTCTTGTTGTTGCTGCTCCTA
GCGTTGCTGCTGTCGTCGATCAGTTGTGCATTCAAACACCCTTAATCTCA
CACCTCTTCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTC back to topCoding sequence (CDS) from alignment at chr5:339428..341667- >NO05G01160.1 ID=NO05G01160.1|Name=NO05G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr5:339428..341667- (Nannochloropsis oceanica) ATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCCCATGCCAGTGCG AAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAAGTGACGAGCCTG AAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACACTCGCAGCGACG ACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCACGACGATGACAAC GGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTGCCGGGCAAAGCG GTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGGTTTA GGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCCGCAC GTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAACCACG GCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCAGTGG GCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCCTGGT ACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTCCTCA TCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTTGCTC AAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTGGGTA TTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTGTTGT TGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAAAGAT CAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGGAAGG GGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTGTGCA ACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAACGCTC ACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAGCTGT GGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAGTTTG TGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCTCCGG CAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTACTAT TGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTTGAGG GGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGACTGTG GATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGTTTCA GGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTCATGT TTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGAAGTT GGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAG back to top
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