NO05G01110, NO05G01110 (gene) Nannochloropsis oceanica

Overview
NameNO05G01110
Unique NameNO05G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr5:326501..327241 +

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Properties
Property NameValue
Description50s ribosomal protein l20
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:326501..327241 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR035566Ribosomal_protein_L20_C
IPR005813Ribosomal_L20
Homology
BLAST of NO05G01110 vs. NCBI_GenBank
Match: EWM28277.1 (50s ribosomal protein l20 [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 7.000e-57
Identity = 119/158 (75.32%), Postives = 130/158 (82.28%), Query Frame = 0
Query:    1 MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSRGLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRSQ 159
            M  SWLG L  RRA    ++ A   P   +     S+   L  PF+Q SR LANHRHKKI+KMAKGYRGRTNCFR+AVQRVEKALQYAYRDRKVKKREFRS+WIQRIGAAVQQYGMNYSRFIPGL+RANITLNRKVLAD+AV+EPYSFKAVVETVRSQ
Sbjct:    1 MMSSWLGSLVLRRAATVATIRAGSQPD-AVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: CBJ48761.1 (50S ribosomal protein L20P [Ectocarpus siliculosus])

HSP 1 Score: 148.3 bits (373), Expect = 2.000e-32
Identity = 72/106 (67.92%), Postives = 93/106 (87.74%), Query Frame = 0
Query:   54 NHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRSQ 159
            NHRHKKI+K+AKGYRGR+ + F++A+QRVEKALQ AYRDRK KKREFR +WI+RI A V+Q+GM YS F+   ++A++ LNRKVLA+MAVTEPYSF+AVVETV+++
Sbjct:    5 NHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 110          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: PIZ32582.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium CG_4_10_14_0_8_um_filter_37_21])

HSP 1 Score: 145.2 bits (365), Expect = 1.700e-31
Identity = 71/103 (68.93%), Postives = 89/103 (86.41%), Query Frame = 0
Query:   53 ANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVET 155
            A+ RHKKIIK+AKGYRGR+ NCFR+A+QRVEKALQYAYRDR+ KKREFR++WIQRI AAV++YGM YS FI GL +A + L+RKV+ADMA+  P +FK +V+T
Sbjct:   10 AHKRHKKIIKLAKGYRGRSKNCFRIALQRVEKALQYAYRDRRNKKREFRALWIQRINAAVREYGMKYSTFINGLNKAGVELDRKVMADMAMNTPKAFKDLVKT 112          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OFW80991.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_34] >OFW85575.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_40_8] >OFW95008.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26] >OFX10544.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_19] >OFX12091.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_11])

HSP 1 Score: 143.7 bits (361), Expect = 5.000e-31
Identity = 68/103 (66.02%), Postives = 89/103 (86.41%), Query Frame = 0
Query:   56 RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RHKKI+KMAKGYRGR  NCFR+A+++VEKA+QYAYRDRKV+KR+FRS+WIQRI AAV+++G+ YSRFI GLK A I L+RKVL+D+A+ EP +F  +VE  ++
Sbjct:   13 RHKKILKMAKGYRGRAKNCFRVAIEKVEKAMQYAYRDRKVRKRDFRSLWIQRINAAVREHGLIYSRFISGLKAAQIDLDRKVLSDLAIREPETFGKIVEKAKA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_010302273.1 (50S ribosomal protein L20 [Candidatus Odyssella thessalonicensis])

HSP 1 Score: 143.3 bits (360), Expect = 6.600e-31
Identity = 70/109 (64.22%), Postives = 92/109 (84.40%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            RG+  H RHKKIIKMAKGYRGR++ CFR A+QRVEK LQYAYRDR+VKKR FR++WIQRI A V++YG+NYS F+ GL +A I ++RK+LA +A++ P +FK++VETV+
Sbjct:    6 RGVTTHARHKKIIKMAKGYRGRSSTCFRPAIQRVEKGLQYAYRDRRVKKRNFRALWIQRINAGVREYGLNYSTFMGGLIKAGINVDRKILAGLAMSYPETFKSIVETVQ 114          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: XP_009035407.1 (hypothetical protein AURANDRAFT_8683, partial [Aureococcus anophagefferens] >EGB09885.1 hypothetical protein AURANDRAFT_8683, partial [Aureococcus anophagefferens])

HSP 1 Score: 142.5 bits (358), Expect = 1.100e-30
Identity = 71/109 (65.14%), Postives = 87/109 (79.82%), Query Frame = 0
Query:   50 RGLANHRHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG A+ +HKK IK+AKGYRGR N CFR+AVQRVEKA QYAYRDRKVKKRE R  WI+ I A+ + YG+ Y+RFI G++ A+I LNRKVLAD+AV EP SF +V+E  R+
Sbjct:    1 RGFASRKHKKFIKLAKGYRGRANRCFRIAVQRVEKAWQYAYRDRKVKKREMRKSWIRSINASSRAYGVPYNRFIAGMRSADIDLNRKVLADLAVNEPLSFLSVLEVTRA 109          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_038465301.1 (50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae] >AIK96685.1 50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae])

HSP 1 Score: 142.1 bits (357), Expect = 1.500e-30
Identity = 70/109 (64.22%), Postives = 90/109 (82.57%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            RG+  H RHKKIIKMAKGYRGR+  CFR A+QRVEK LQYAYRDR+ KKR FR++WIQRI A V++YG+NYS F+ GL +A I ++RKVLA +A++ P +FK++VETV+
Sbjct:    6 RGVTTHARHKKIIKMAKGYRGRSGTCFRPAIQRVEKGLQYAYRDRRAKKRTFRALWIQRINAGVREYGLNYSTFMGGLIKAGIDMDRKVLAGLAMSNPETFKSIVETVQ 114          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_038602345.1 (50S ribosomal protein L20 [Rickettsiales bacterium Ac37b] >AIL64909.1 Ribosomal protein L20 [Rickettsiales bacterium Ac37b])

HSP 1 Score: 142.1 bits (357), Expect = 1.500e-30
Identity = 65/103 (63.11%), Postives = 92/103 (89.32%), Query Frame = 0
Query:   56 RHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RHKKI+K+AKGYRGR+ NC+R+A+++VEKAL+YAYRDR+ +KR+FR++WIQRI AAV++YG+ YSRFI G+ ++ IT++RKVLAD+AV EP +FK+VVE  ++
Sbjct:   13 RHKKILKLAKGYRGRSKNCYRIAIEKVEKALRYAYRDRRNRKRDFRALWIQRINAAVREYGLVYSRFIDGINKSGITMDRKVLADLAVREPEAFKSVVEQAKA 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: OYZ36605.1 (50S ribosomal protein L20 [Alphaproteobacteria bacterium 16-39-46] >OZA42148.1 50S ribosomal protein L20 [Alphaproteobacteria bacterium 17-39-52])

HSP 1 Score: 141.4 bits (355), Expect = 2.500e-30
Identity = 69/110 (62.73%), Postives = 94/110 (85.45%), Query Frame = 0
Query:   50 RGLANH-RHKKIIKMAKGYRGRTN-CFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRS 158
            RG+  H RHKKI+K+AKGYRGR++ CFR+AV++VEK L YAYRDRK KKREFR++WIQRI AAV++YGM YS+FI GLK+A I ++RKVL+++A++E  +FK +V+ VR+
Sbjct:    6 RGVTTHNRHKKILKLAKGYRGRSSTCFRVAVEKVEKGLLYAYRDRKAKKREFRALWIQRINAAVREYGMIYSQFIFGLKKAGIEMDRKVLSELAISEKETFKGLVDEVRN 115          
BLAST of NO05G01110 vs. NCBI_GenBank
Match: WP_045797523.1 (50S ribosomal protein L20 [Orientia chuto] >KJV55200.1 ribosomal protein L20 [Orientia chuto str. Dubai])

HSP 1 Score: 141.0 bits (354), Expect = 3.300e-30
Identity = 68/110 (61.82%), Postives = 93/110 (84.55%), Query Frame = 0
Query:   48 QSRGLANHRHKKIIKMAKGYRGRT-NCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVR 157
            +S  ++ +RHKKI+K+AKGYRGR  NCFR+A+Q+VEKALQY+YRDR+ +KR+FR++WIQRI AAV+QYG+ YS+FI GLK+ANIT++RKV+AD+AV    SF  +VE  +
Sbjct:    5 KSGKVSKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYGITYSQFISGLKQANITIDRKVMADLAVHNSDSFLHLVELTK 114          
The following BLAST results are available for this feature:
BLAST of NO05G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28277.17.000e-5775.3250s ribosomal protein l20 [Nannochloropsis gaditan... [more]
CBJ48761.12.000e-3267.9250S ribosomal protein L20P [Ectocarpus siliculosus... [more]
PIZ32582.11.700e-3168.9350S ribosomal protein L20 [Alphaproteobacteria bac... [more]
OFW80991.15.000e-3166.0250S ribosomal protein L20 [Alphaproteobacteria bac... [more]
WP_010302273.16.600e-3164.2250S ribosomal protein L20 [Candidatus Odyssella th... [more]
XP_009035407.11.100e-3065.14hypothetical protein AURANDRAFT_8683, partial [Aur... [more]
WP_038465301.11.500e-3064.2250S ribosomal protein L20 [Candidatus Paracaedibac... [more]
WP_038602345.11.500e-3063.1150S ribosomal protein L20 [Rickettsiales bacterium... [more]
OYZ36605.12.500e-3062.7350S ribosomal protein L20 [Alphaproteobacteria bac... [more]
WP_045797523.13.300e-3061.8250S ribosomal protein L20 [Orientia chuto] >KJV552... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003757NSK003757Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01110.1NO05G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583749gene_2902Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g36gene2297Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01110.1NO05G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01110 ID=NO05G01110|Name=NO05G01110|organism=Nannochloropsis oceanica|type=gene|length=741bp
GTTCACCGTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGT
GGCCTTCATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAAT
AGTTCCATGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTC
TCTCCGTTCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCA
TCACCATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTTCGACGCGCCACC
GCGGCCCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACAC
AAGCACCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGT
CCCGTGGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAG
GGCTACCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGA
GAAGGCATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGT
TCCGCTCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGC
ATGAACTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCT
CAACCGCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCA
AGGCAGTGGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGG
GTGTACAAAAGAAAGAAAAAAATGGCTACAAGACATGAAGA
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protein sequence of NO05G01110.1

>NO05G01110.1-protein ID=NO05G01110.1-protein|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSR
GLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFR
SIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKA
VVETVRSQ*
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Synonyms
Publications