NO05G01110.1, NO05G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01110.1
Unique NameNO05G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr5:326501..327241 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:326501..327241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01110.1 vs.
Match: EWM28277.1 (50s ribosomal protein l20 [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 7.000e-57
Identity = 119/158 (75.32%), Postives = 130/158 (82.28%), Query Frame = 0 
Query:    1 MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSRGLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFRSIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKAVVETVRSQ 159
            M  SWLG L  RRA    ++ A   P   +     S+   L  PF+Q SR LANHRHKKI+KMAKGYRGRTNCFR+AVQRVEKALQYAYRDRKVKKREFRS+WIQRIGAAVQQYGMNYSRFIPGL+RANITLNRKVLAD+AV+EPYSFKAVVETVRSQ
Sbjct:    1 MMSSWLGSLVLRRAATVATIRAGSQPD-AVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
The following BLAST results are available for this feature:
BLAST of NO05G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28277.17.000e-5775.3250s ribosomal protein l20 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01110NO05G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01110.1NO05G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01110.1.cds1NO05G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01110.1 ID=NO05G01110.1|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
GTTCACCGTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGT
GGCCTTCATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAAT
AGTTCCATGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTC
TCTCCGTTCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCA
TCACCATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTTCGACGCGCCACC
GCGGCCCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACAC
AAGCACCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGT
CCCGTGGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAG
GGCTACCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGA
GAAGGCATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGT
TCCGCTCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGC
ATGAACTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCT
CAACCGCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCA
AGGCAGTGGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGG
GTGTACAAAAGAAAGAAAAAAATGGCTACAAGACATGAAGA
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protein sequence of NO05G01110.1

>NO05G01110.1-protein ID=NO05G01110.1-protein|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAPSWLGILSFRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSR
GLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFR
SIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKA
VVETVRSQ*
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mRNA from alignment at chr5:326501..327241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01110.1 ID=NO05G01110.1|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp|location=Sequence derived from alignment at chr5:326501..327241+ (Nannochloropsis oceanica)
GTTCACCGTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGT
GGCCTTCATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAAT
AGTTCCATGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTC
TCTCCGTTCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCA
TCACCATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTTCGACGCGCCACC
GCGGCCCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACAC
AAGCACCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGT
CCCGTGGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAG
GGCTACCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGA
GAAGGCATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGT
TCCGCTCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGC
ATGAACTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCT
CAACCGCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCA
AGGCAGTGGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGG
GTGTACAAAAGAAAGAAAAAAATGGCTACAAGACATGAAGA
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Coding sequence (CDS) from alignment at chr5:326501..327241+

>NO05G01110.1 ID=NO05G01110.1|Name=NO05G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr5:326501..327241+ (Nannochloropsis oceanica)
ATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTTCGACGCGCCACCGCGGC
CCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACACAAGCA
CCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGTCCCGT
GGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAGGGCTA
CCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGAGAAGG
CATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGTTCCGC
TCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGCATGAA
CTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCTCAACC
GCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCAAGGCA
GTGGTGGAGACGGTGCGTAGCCAGTGA
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Synonyms
Publications