NO05G01050, NO05G01050 (gene) Nannochloropsis oceanica

Overview
NameNO05G01050
Unique NameNO05G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1133
Alignment locationchr5:313215..314347 +

Link to JBrowse

Properties
Property NameValue
DescriptionCyclin
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:313215..314347 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
IPR006671Cyclin_N
IPR013763Cyclin-like
IPR004367Cyclin_C-dom
Homology
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: EWM28235.1 (Cyclin [Nannochloropsis gaditana])

HSP 1 Score: 256.5 bits (654), Expect = 1.100e-64
Identity = 149/291 (51.20%), Postives = 177/291 (60.82%), Query Frame = 0 
Query:   37 TSSLPPPEALAFLRDGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDI-----------------------------------------------------------------AQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAAATGGLSLMTSSA 263
            +SS P  EA AFL++G R +L+GWL + GDKL+MRRATVHVAIA+LDRLF+RHVPPKEKW ML +SCLQVAAKYEEAEENVPAVSQLS ASGIGL+IQTVQRWE  +                                                                  Q          APAQLRKHAHFF+SY +V EF +LA Y PSFVAALLLYLAR++LG++P WR EL +LTGVEE AL+G+A+++L+SF+ DYP + L       PA A  GL   TSSA
Sbjct:  536 SSSSPVLEAQAFLQNGHRCRLVGWLVAVGDKLRMRRATVHVAIAFLDRLFERHVPPKEKWPMLGVSCLQVAAKYEEAEENVPAVSQLSRASGIGLSIQTVQRWEVAVLEGLGWQLTCIVPLHFVEFYMTRGVLFWGDTVAGGKQRLGPCLPPSLSAGSAPTKPWGWRQQQQGLQHPQQQQHQYVAPAQLRKHAHFFSSYLLVHEFPTLALYLPSFVAALLLYLARISLGIAPAWREELVTLTGVEESALMGVAARVLRSFQSDYPQYLL------GPAGAVRGLPDATSSA 820
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: EJK47387.1 (hypothetical protein THAOC_33892 [Thalassiosira oceanica])

HSP 1 Score: 105.5 bits (262), Expect = 3.100e-19
Identity = 63/216 (29.17%), Postives = 107/216 (49.54%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEEN---VPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G++  +  +TVHV I +LD++F+    P+  W+++A +CL +AAKYEEAEE+   +P + QL+     G T  T +  E ++ +                                       P  ++K+A FF +  + QE+ S   Y PS +AA +L  +R+AL ++P WRPEL +LTG  E  +  + + +   +   +P H
Sbjct:  401 RRYLVDWMSDVGEQCNLHTSTVHVGILFLDKIFRSREVPRNHWQLVATACLSIAAKYEEAEEHCPPIPDLLQLTKLHSAGHTSLTFREGEVEVLRNLGWKLRAVPPLHVIGYFLSKGAVFHDDSWQSRSLIDKIPKYIKKYADFFCNLTL-QEY-SFQKYLPSHLAAAILLASRVALQITPRWRPELEALTGYSEAGIEDVFNHVWSYYEEQFPGH 614
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: OEU18880.1 (cyclin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 103.6 bits (257), Expect = 1.200e-18
Identity = 64/219 (29.22%), Postives = 105/219 (47.95%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIG-------------LTIQTVQRWE---------------------EDIAQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G++ ++  +TVHV I +LD++F+    P+ +W++LA +C+ VAAKYEEAEE+ P + +L   + +G             L +     W+                     ED  Q           P  ++K+A FF +  + QE+ S   Y PS +AA ++  +R+AL + P WRPEL  LTG  E  +      +   +   +P H
Sbjct:   24 RRYLVDWMSDVGEQCRLHNSTVHVGILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRYLNWQLRAVPPIHVVGYFLAKGAVFYEDTWQ---GRSLIEKIPKYMKKYADFFCNLTL-QEY-SFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: XP_002287185.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94628.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 102.4 bits (254), Expect = 2.600e-18
Identity = 68/230 (29.57%), Postives = 109/230 (47.39%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEE---NVPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAAAT 253
            RR L+ W++  G++  +  +TVH  I YLD++F+    P+  W++LA +CL VAAKYEEAEE   ++P + +L+  S +G T  + +  E  + +                                       P  ++K+A FF +  + QE+ S   Y P+ +AA +L  +R AL +SP WRPEL  LTG EE  +      +   +   +P H   +    + AA T
Sbjct:   93 RRYLVDWMSDVGEQCSLHTSTVHCGILYLDKIFREREVPRGSWQLLATACLSVAAKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRNLGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTL-QEY-SFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGHGERSISPRSVAAKT 320
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX13574.1 (hypothetical protein FisN_3Lh143 [Fistulifera solaris])

HSP 1 Score: 95.9 bits (237), Expect = 2.400e-16
Identity = 59/216 (27.31%), Postives = 103/216 (47.69%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQL---SWASGIGLTIQTVQRWEEDIAQXXXXXXXXXXA----------------------------PAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G+  ++   T+HV++ Y+D++ +    P+  W++ A +C+ VAAKYEEAEE+ P + +L   +  S  G      +  E +I +          A                            P  L+K+A FF + A+ Q++ S   Y PS +AA  +  +R+AL + P WRPEL   TG +E  ++ + + +   +   +P H
Sbjct:   94 RRFLVDWMSDVGEHYRLHNTTIHVSVLYMDKILRSDHIPRSLWQLFATACITVAAKYEEAEEHCPHIPELLRFTKLSQSGYDSLAFRDGEVEILKRLGWQLRAFPALHVVGYILAKGACFVDDAWQGRHLIPKIPRYLKKYAEFFCNLAL-QDY-SFQQYRPSILAAAAVMASRVALQIEPKWRPELVRRTGYDEFDILPIFNHLWSYYEEQFPGH 307
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX15670.1 (hypothetical protein FisN_3Hh143 [Fistulifera solaris])

HSP 1 Score: 94.7 bits (234), Expect = 5.400e-16
Identity = 59/216 (27.31%), Postives = 103/216 (47.69%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQL---SWASGIGLTIQTVQRWEEDIAQXXXXXXXXXXA----------------------------PAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G+  ++   T+HV++ Y+D++ +    P+  W++ A +C+ VAAKYEEAEE+ P + +L   +  S  G      +  E +I +          A                            P  L+++A FF + A+ Q++ S   Y PS +AA  +  +R+AL V P WRPEL   TG +E  ++ + + +   +   +P H
Sbjct:   41 RRFLVDWMSDVGEHYRLHNTTIHVSVLYMDKILRSDHIPRSLWQLFATACITVAAKYEEAEEHCPHIPELLRFTKLSHSGYDSLAFRDGEVEILKRLGWQLRAFPALHIVGYILAKGACFVNDAWQGRQLIPKIPKYLKRYAEFFCNLAL-QDY-SFQQYRPSMLAAAAIMASRVALQVEPKWRPELIRRTGYDEFDILPVFNHLWSYYEEQFPGH 254
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX95548.1 (Hypothetical protein PINS_003444 [Pythium insidiosum])

HSP 1 Score: 92.0 bits (227), Expect = 3.500e-15
Identity = 63/211 (29.86%), Postives = 99/211 (46.92%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDR-LFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDIA----------------------------QXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVE----EDALVGLASQMLKSF 232
            RR L+ W+   G+++++R+ TVH AIAYL+R L    +PPK+++++LA+SCL +AAKY   EE VP +++         +I+ + + E D                                         A    RK+A FF    +  +      Y PS VAA +L  +R ALG++P WR EL  LTG      E   + + +  +K+F
Sbjct:  118 RRVLVDWMCEVGEEMQIRKGTVHTAIAYLERVLSMGPLPPKDRFQLLALSCLLIAAKYLGPEEEVPPMAEFWEFGNRCYSIEEIHQMEMDTLNKLGWSLTALSPIHFVRFYLSQPVLFTNDEIQGTDMVEEALEYYRKYADFFVDLCL--QSYQFQAYRPSLVAASILAASRKALGMTPLWREELTELTGYSPEQVEPCFIAVWTHYVKTF 326
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: OWZ23737.1 (hypothetical protein PHMEG_0001337 [Phytophthora megakarya])

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-13
Identity = 61/198 (30.81%), Postives = 98/198 (49.49%), Query Frame = 0 
Query:   54 RRKLMGWLASTGD-KLKMRRATVHVAIAYLDRLFQRH--VPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQ---------------------------LSWASGIGLTIQTVQRWEEDIA----QXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEE 218
            RR L+ W+A  G+  L+MR+  VH A+ YL+++  R   +P K+++++LA+SCL++A K++  EE +P +++                           L W   +   +  +Q +                    A A   K+A FF    ++QE+ SL  Y PS VAA +L  +R ALGV+P WR EL+ LTG +E
Sbjct:   85 RRVLVDWMAEVGETHLRMRKEHVHAAVGYLEKVLAREEPLPRKDRFQLLALSCLRMALKFQGTEEELPPMAEFWEMGNRMYSYDEISDAEAELFQKCNRLGWRLAVVTPLHFLQHYMGQTVLFADDRVLGAELVDEAHAYYCKYAEFFVD-LVLQEY-SLQVYRPSVVAASILVASRKALGVAPLWRDELSVLTGYDE 280
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: XP_002182616.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45903.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13
Identity = 51/209 (24.40%), Postives = 98/209 (46.89%), Query Frame = 0 
Query:   61 LASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEEN---VPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            ++  G+  ++  +T+HV++ YLD++F+    P+ +W++LA +C+ VAAKYEEAEE+   +P + QL+  + +G T  + +  E  + +                                       P  ++K+A FF +  + +   S   Y P+ + A ++  +R+AL + P W+ EL  LTG  E  +  +   +   +   +P H
Sbjct:    1 MSDVGEHCRLHHSTIHVSVLYLDKIFRSGSIPRSQWQLLATACISVAAKYEEAEEHCPPIPDLLQLTKLADVGHTSLSFREGELRVLRHLGWRLRAIPPIHVVGYFLAKGVCFEDDSWQERGLVEKIPKYVKKYAEFFCNLTLQEH--SFQQYLPTKLGAAIILASRVALQLEPRWKAELVRLTGYSESDISPIFQHVWNHYEEQFPGH 207
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: CCI44075.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 84.0 bits (206), Expect = 9.500e-13
Identity = 60/197 (30.46%), Postives = 94/197 (47.72%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQ-RHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASG-----------IGLTIQTVQRW---------------------EEDIAQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEE 218
            RR L+ W++  G+++++R+ T+H AIAYL+R+     +P K+++++LA+SC+ +AAKY   E  VP +S+  W  G           + L+  T   W                      +D  Q          A    R++  FF    + +       + PS VAA +L  +R ALG+SPTWR EL  LTG  E
Sbjct:   68 RRVLVDWMSEVGEEMRVRKTTIHSAIAYLERILMIGPLPSKDRFQVLALSCILIAAKYNGPECEVPPMSEF-WEFGNRCYSINEIHSMELSTLTKLDWCLTALGPIHFVHYFVSRPVIFADDTMQ---DDSVVSEAIEYYRRYTEFFVDLCLQEH--QFRSFRPSLVAASILAASRQALGISPTWREELELLTGYIE 258
The following BLAST results are available for this feature:
BLAST of NO05G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28235.11.100e-6451.20Cyclin [Nannochloropsis gaditana][more]
EJK47387.13.100e-1929.17hypothetical protein THAOC_33892 [Thalassiosira oc... [more]
OEU18880.11.200e-1829.22cyclin-like protein [Fragilariopsis cylindrus CCMP... [more]
XP_002287185.12.600e-1829.57predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX13574.12.400e-1627.31hypothetical protein FisN_3Lh143 [Fistulifera sola... [more]
GAX15670.15.400e-1627.31hypothetical protein FisN_3Hh143 [Fistulifera sola... [more]
GAX95548.13.500e-1529.86Hypothetical protein PINS_003444 [Pythium insidios... [more]
OWZ23737.11.100e-1330.81hypothetical protein PHMEG_0001337 [Phytophthora m... [more]
XP_002182616.11.500e-1324.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CCI44075.19.500e-1330.46unnamed protein product [Albugo candida][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003763NSK003763Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01050.1NO05G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526535gene_2896Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g29gene2291Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01050.1NO05G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01050 ID=NO05G01050|Name=NO05G01050|organism=Nannochloropsis oceanica|type=gene|length=1133bp
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGgtagcggtgctggaggggctagggtggcag
ctgacgtgcatcgttccgttgcattttatcgagtactacttgacccgcgg
tgttttgttttgtcatgacactgttgcggggggtcggcatcgtctcgccc
ctcctccccttcccccctcccgcccgggcttctgctgaccaagGAAGACA
TTGCCCAAAAGCAACAACAACAGCAGCAGCAGCAGATCGCCCCAGCCCAA
CTTCGAAAACACGCGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGTT
CACCTCACTAGCTCCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTGT
ACCTGGCACGGCTCGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCTC
GCTTCTCTGACAGGAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTCA
AATGTTGAAGTCGTTTAGGTTGGATTATCCACACCACCCTCTAGCAGCAG
CAGGAGCGCCAGCACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGACT
TCGAGTGCCCTACGTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAGG
TAAGAACTATATTGTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGAG
GAGGGGGAGCGGTGAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTAT
TATCTTATGCCGCGGGGCACGGCATGTGTGTAG
back to top

protein sequence of NO05G01050.1

>NO05G01050.1-protein ID=NO05G01050.1-protein|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKHDEQRHQARYGLPFLPLPPSPAAAAAAAAAVADCTSSLPPPEALAFLR
DGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLA
ISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDIAQKQQQQ
QQQQIAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALG
VSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAA
ATGGLSLMTSSALRAGSRAGERKGGGKNYIVAAAGMGDGAGGGGGAVSVF
LPDPPPFDYYLMPRGTACV*
back to top
Synonyms
Publications