NO05G01050.1, NO05G01050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01050.1
Unique NameNO05G01050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length960
Alignment locationchr5:313215..314347 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:313215..314347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01050.1 vs.
Match: EWM28235.1 (Cyclin [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 1.400e-40
Identity = 97/151 (64.24%), Postives = 113/151 (74.83%), Query Frame = 0 
Query:    1 MKHDEQRHQARYGLPFLPLP-----------PSPAAAAAAAAAVADCTSSLPPPEALAFLRDGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWE 141
            M+ DE+R++  YGL  LP             P PAAA   A+     +SS P  EA AFL++G R +L+GWL + GDKL+MRRATVHVAIA+LDRLF+RHVPPKEKW ML +SCLQVAAKYEEAEENVPAVSQLS ASGIGL+IQTVQRWE
Sbjct:  489 MRLDERRNRPYYGLSSLPPSCPLSFSPSPDAPLPAAAVQLASHTPFPSSSSPVLEAQAFLQNGHRCRLVGWLVAVGDKLRMRRATVHVAIAFLDRLFERHVPPKEKWPMLGVSCLQVAAKYEEAEENVPAVSQLSRASGIGLSIQTVQRWE 639
The following BLAST results are available for this feature:
BLAST of NO05G01050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28235.11.400e-4064.24Cyclin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01050NO05G01050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01050.1NO05G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01050.1.cds1NO05G01050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01050.1.cds2NO05G01050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01050.1 ID=NO05G01050.1|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGAAGACATTGCCCAAAAGCAACAACAACAG
CAGCAGCAGCAGATCGCCCCAGCCCAACTTCGAAAACACGCGCACTTTTT
TGCCTCGTATGCGATCGTCCAAGAGTTCACCTCACTAGCTCCCTACCCTC
CCTCCTTTGTTGCTGCTCTCCTTCTGTACCTGGCACGGCTCGCCCTAGGC
GTCTCTCCGACTTGGAGGCCGGAGCTCGCTTCTCTGACAGGAGTAGAAGA
AGATGCCTTGGTTGGGCTAGCGTCTCAAATGTTGAAGTCGTTTAGGTTGG
ATTATCCACACCACCCTCTAGCAGCAGCAGGAGCGCCAGCACCAGCAGCA
GCTACAGGGGGGCTATCCCTTATGACTTCGAGTGCCCTACGTGCCGGGAG
TAGAGCAGGAGAGAGGAAAGGAGGAGGTAAGAACTATATTGTTGCAGCGG
CTGGGATGGGGGATGGGGCAGGAGGAGGAGGGGGAGCGGTGAGTGTGTTT
TTGCCGGATCCGCCACCGTTTGATTATTATCTTATGCCGCGGGGCACGGC
ATGTGTGTAG
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protein sequence of NO05G01050.1

>NO05G01050.1-protein ID=NO05G01050.1-protein|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKHDEQRHQARYGLPFLPLPPSPAAAAAAAAAVADCTSSLPPPEALAFLR
DGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLA
ISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDIAQKQQQQ
QQQQIAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALG
VSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAA
ATGGLSLMTSSALRAGSRAGERKGGGKNYIVAAAGMGDGAGGGGGAVSVF
LPDPPPFDYYLMPRGTACV*
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mRNA from alignment at chr5:313215..314347+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01050.1 ID=NO05G01050.1|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1133bp|location=Sequence derived from alignment at chr5:313215..314347+ (Nannochloropsis oceanica)
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGTAGCGGTGCTGGAGGGGCTAGGGTGGCAG
CTGACGTGCATCGTTCCGTTGCATTTTATCGAGTACTACTTGACCCGCGG
TGTTTTGTTTTGTCATGACACTGTTGCGGGGGGTCGGCATCGTCTCGCCC
CTCCTCCCCTTCCCCCCTCCCGCCCGGGCTTCTGCTGACCAAGGAAGACA
TTGCCCAAAAGCAACAACAACAGCAGCAGCAGCAGATCGCCCCAGCCCAA
CTTCGAAAACACGCGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGTT
CACCTCACTAGCTCCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTGT
ACCTGGCACGGCTCGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCTC
GCTTCTCTGACAGGAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTCA
AATGTTGAAGTCGTTTAGGTTGGATTATCCACACCACCCTCTAGCAGCAG
CAGGAGCGCCAGCACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGACT
TCGAGTGCCCTACGTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAGG
TAAGAACTATATTGTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGAG
GAGGGGGAGCGGTGAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTAT
TATCTTATGCCGCGGGGCACGGCATGTGTGTAG
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Coding sequence (CDS) from alignment at chr5:313215..314347+

>NO05G01050.1 ID=NO05G01050.1|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr5:313215..314347+ (Nannochloropsis oceanica)
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGAAGACATTGCCCAAAAGCAACAACAACAG
CAGCAGCAGCAGATCGCCCCAGCCCAACTTCGAAAACACGCGCACTTTTT
TGCCTCGTATGCGATCGTCCAAGAGTTCACCTCACTAGCTCCCTACCCTC
CCTCCTTTGTTGCTGCTCTCCTTCTGTACCTGGCACGGCTCGCCCTAGGC
GTCTCTCCGACTTGGAGGCCGGAGCTCGCTTCTCTGACAGGAGTAGAAGA
AGATGCCTTGGTTGGGCTAGCGTCTCAAATGTTGAAGTCGTTTAGGTTGG
ATTATCCACACCACCCTCTAGCAGCAGCAGGAGCGCCAGCACCAGCAGCA
GCTACAGGGGGGCTATCCCTTATGACTTCGAGTGCCCTACGTGCCGGGAG
TAGAGCAGGAGAGAGGAAAGGAGGAGGTAAGAACTATATTGTTGCAGCGG
CTGGGATGGGGGATGGGGCAGGAGGAGGAGGGGGAGCGGTGAGTGTGTTT
TTGCCGGATCCGCCACCGTTTGATTATTATCTTATGCCGCGGGGCACGGC
ATGTGTGTAG
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Synonyms
Publications