NO05G01000, NO05G01000 (gene) Nannochloropsis oceanica

Overview
NameNO05G01000
Unique NameNO05G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2297
Alignment locationchr5:298514..300810 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:298514..300810 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G01000 vs. NCBI_GenBank
Match: EWM28199.1 (hypothetical protein Naga_100004g24 [Nannochloropsis gaditana])

HSP 1 Score: 138.7 bits (348), Expect = 3.100e-29
Identity = 118/328 (35.98%), Postives = 151/328 (46.04%), Query Frame = 0 
Query:    1 MSIRNPFMQWINQYVRPYLRERLMPLLEA---------EGAAAPKRKSG-SSTRLVSPVGASAAGSQHHISKLSGDQTNSRAGSVISMDSLLLQQQQSAVLATALSAIHRRK----------ASEHQAEIPSVPTQKQQXXXXXTRATLKMDQF-----------------------PXXXXXXXXXXXXXXXXXXIQVNA-----PTTNAGADVVAATATPASTAPSSPSSRFKRCYYVPVMNPLPDLKEKQLAVLEMPLYGIRDMPTFRELLNSLPPSVISTAKLRGLSLLQVPEMVASMEEQSSTAFLSAGDAFPLQ--EELGKG 279
            M+I NPF +W++QY+RP+LR+RL PL++          EG +     SG  +TR + P+      +    SK+       RAG   +  S+                                S+      ++P+  Q  XXXX                                 P                  +Q        P    GA        P+S+  +S S RFKRCYYVPV+NPLPDLKEKQLAVL+M LYG+RDMPTFREL  SLPPSV+STAKLRGL+L Q PEMVA M EQ ++AFLS  D FP+Q  EE G G
Sbjct:    1 MTIGNPFFKWVSQYLRPFLRDRLKPLIDTYAPNKIATLEGPSPVSVASGVPATRTLQPLFNDLRANVATKSKVKSTVHRMRAGESSACGSMSANSXXXXXXXXXXXXXXXXXXXXXXXXXXCTSQPGLSEKTLPSCLQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSSTGEPRVTLSSQQQLEDVQRGEQRKLNPVDRGGARTKVEVNAPSSSGAAS-SPRFKRCYYVPVINPLPDLKEKQLAVLDMRLYGVRDMPTFRELAPSLPPSVLSTAKLRGLTLTQAPEMVAGMAEQETSAFLSVADVFPMQEREETGVG 327
The following BLAST results are available for this feature:
BLAST of NO05G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28199.13.100e-2935.98hypothetical protein Naga_100004g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003769NSK003769Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01000.1NO05G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583717gene_2892Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g24gene2287Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01000.1NO05G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01000 ID=NO05G01000|Name=NO05G01000|organism=Nannochloropsis oceanica|type=gene|length=2297bp
TTGTGATACTCATGGCCTTGATTACATGTACACTCAAAGTTTGCCTTCCC
AAGAGTAAACAAAACGCAGCTTGTGAGATAAAGATTACGATCATGTCGTT
TCGTTGGTCCCTTTGGGATCGTAAGCGTGCTCATACTGCAAGTCCATCAA
TCACCCACGCCTTCTCGCCGCCGCCTTTGGAGCGACGCAATGCAACGCAA
CGGACGAAGCAAACCACGCATCGCTCACCAAAGTCCGCAGCCAAAATATG
CATATGAGTCAAATCATTACTTGAGCATAGTTGGTTTAAGGCCATATAGC
GGGTCGGATCTTTGTCCAGCCCTGCAATTGCCTCCTAAAAACGACGTCTC
GTCCTTTTCGTTCCCGGCCCGCGCACCCACTTTGCCGTGTCTGCACACCT
GCGTAGCAAGTCTCGCCCACACGACGCAGACGTCCTTGGGGTGGATCTCG
CACGACGATAACAATCCCGACAGACAGGAATGAATAGCCCTGACCCCGAC
CCTTCCTATTCCTAACACACAGGCCGTTATTTTGTGTGAAGGTTATTACA
TTTTGTACTAATACTTTCCGTCACGCCACGCGTCACCCTTTGGAAAACCC
GCCTCCTCGACCTCGCCTCAACCATGTCCATCCGCAACCCCTTTATGCAA
TGGATCAATCAGTACGTGCGCCCTTACCTGCGAGAACGCCTGATGCCCTT
GTTGGAAGCTGAAGGAGCCGCTGCCCCCAAGAGGAAGAGCGGCAGCAGCA
CGCGGCTTGTCAGTCCTGTTGGTGCTAGCGCTGCCGGCAGCCAACACCAC
ATCTCTAAGCTCAGCGGTGACCAGACGAATAGCAGGGCGGGAAGTGTTAT
CTCTATGGACTCCCTTCTTCTCCAGCAGCAGCAATCTGCTGTCTTGGCCA
CGGCTCTTTCTGCCATCCATCGCCGTAAGGCGTCGGAGCATCAAGCAGAG
ATCCCTTCTGTCCCAACACAGAAGCAACAACACCAACACCAAGCTACTCG
TGCTACCCTTAAGATGGATCAGTTTCCCTCCTCCGCCCCGGAACAGCAGG
AGCAACAACAGCAGGTGTCCGCCCGCACCAAGATCCAAGTCAACGCCCCC
ACGACTAACGCTGGCGCCGATGTTGTCGCCGCCACTGCTACACCTGCTTC
TACAGCCCCCTCTTCTCCCTCTTCTCGTTTCAAGCGGTGTTACTACGTGC
CAGTCATGAACCCTTTGCCTGACTTGAAGGAGAAGCAGCTCGCTGTCTTA
GAGATGCCTCTGTACGGCATCCGCGATATGCCCACCTTCCGAGAGCTACT
TAATTCCCTCCCACCCTCTGTGATTTCGACAGCGAAGCTGAGGGGTCTGT
CCCTGTTGCAGGTACCGGAGATGGTGGCGTCGATGGAGGAGCAGAGCTCA
ACCGCTTTCTTGTCCGCGGGGGATGCCTTTCCCTTGCAGGAAGAGCTGGG
GAAGGGAAAAAGGAGGAAAGAGGTGGAGGGAGAGGAGGAAGAGGAGGAAG
AGGGCGTGGTAGAGAGGGAGGAGCGTTTGGCCTAGACGTTGGTTTGATGG
GGAGGGGGAGTGAATGGGAGGGAAGGGAGCGCGAGTTGGTTGGTACTGGC
GCGGCTGCAAGCTACGTGAGAAGGGTGGTTGAGAGGTCAAGTGTTCATGT
ACAAAAAAAGGTAGCATCATGCGTACGAAATCAGTAGGAGGAAGAGCCGC
AGCAGAAGAAGCAACTTCTTTCGTGGTTGTAAATAATGGATGGATAAACT
GAAACGGGGGAGGAGGGACAGGACGAAGGGATGGGGGCATGGATGTGAGA
TTTACGCCCTTTATTTTAACGTTCGTTTCCTACTATTTATTCCTCCTGGA
TGGATAGTGCTTTGGCTATGTCGAACAAGGTCGTCATCCAGCAGTAGTCA
TCACTGGCACTTTTTCATTATTGTTTTCAATTGATATCGTTATTTATGTT
TATTGGTCTGTCCGTCATCGTACGTCGACAAGAACTCGCCGTTTTCTCCA
CTTACGGATTTGACAAAGGAGGTCACTTTGGAAAGAGGACGAATATAATC
AAACTCGAGTATATATACTTCAAATGTCGTCTGTGGCAGCGGCTGTAACG
GCCCACCAGAGGGATGAGTCGAGCGCGCTAGATATAGTGAGGGAGATGCA
AACCTGTTTTGTGAGAAAATGTAATAAAAGTACTTCCAAAAGGGCAAACA
AGGGTGGAGGCAGACAAAGGCATTTGGATGACTCGTATGGGAAGACAGAG
GGAGCAGGCAAAGCACTTCCAATAAAGGAAAGAACTACGAGTATCGC
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protein sequence of NO05G01000.1

>NO05G01000.1-protein ID=NO05G01000.1-protein|Name=NO05G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MSIRNPFMQWINQYVRPYLRERLMPLLEAEGAAAPKRKSGSSTRLVSPVG
ASAAGSQHHISKLSGDQTNSRAGSVISMDSLLLQQQQSAVLATALSAIHR
RKASEHQAEIPSVPTQKQQHQHQATRATLKMDQFPSSAPEQQEQQQQVSA
RTKIQVNAPTTNAGADVVAATATPASTAPSSPSSRFKRCYYVPVMNPLPD
LKEKQLAVLEMPLYGIRDMPTFRELLNSLPPSVISTAKLRGLSLLQVPEM
VASMEEQSSTAFLSAGDAFPLQEELGKGKRRKEVEGEEEEEEEGVVEREE
RLA*
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Synonyms
Publications