NO05G01000.1, NO05G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01000.1
Unique NameNO05G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2297
Alignment locationchr5:298514..300810 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:298514..300810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01000.1 vs.
Match: EWM28199.1 (hypothetical protein Naga_100004g24 [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 1.100e-37
Identity = 136/352 (38.64%), Postives = 188/352 (53.41%), Query Frame = 0 
Query:    1 MSIRNPFMQWINQYVRPYLRERLMPLLEA---------EGAAAPKRKSG-SSTRLVSPVGASAAGSQHHISKLSGDQTNSRAGSV-----ISMDSLL---------------LQQQQSAVLATALSAIHRRKA----SEHQAEIPSVPTQKQQHQH----QATRATLKMDQFPSSAP-----------EQQEQQQQVSARTKIQVNAPTTNAGADVVAATATPASTAPSSPSSRFKRCYYVPVMNPLPDLKEKQLAVLEMPLYGIRDMPTFRELLNSLPPSVISTAKLRGLSLLQVPEMVASMEEQSSTAFLSAGDAFPLQ--EELGKGKRRKEVEGEEEEEEEGVVEREER 302
            M+I NPF +W++QY+RP+LR+RL PL++          EG +     SG  +TR + P+      +    SK+       RAG       +S +SLL                Q++++    T+   +  +        HQ +   +   +++H H    +  +A L      +SAP             Q+Q + V    + ++N P    GA        P+S+  +S S RFKRCYYVPV+NPLPDLKEKQLAVL+M LYG+RDMPTFREL  SLPPSV+STAKLRGL+L Q PEMVA M EQ ++AFLS  D FP+Q  EE G G+  KE EG EE E     ++E+R
Sbjct:    1 MTIGNPFFKWVSQYLRPFLRDRLKPLIDTYAPNKIATLEGPSPVSVASGVPATRTLQPLFNDLRANVATKSKVKSTVHRMRAGESSACGSMSANSLLIEQQQAALLTSALVAAQRKKATSTCTSQPGLSEKTLPSCLQHHQQQQLQLQQNQREHPHLPEKEVEKAALASTTEEASAPPSSTGEPRVTLSSQQQLEDVQRGEQRKLN-PVDRGGARTKVEVNAPSSSGAAS-SPRFKRCYYVPVINPLPDLKEKQLAVLDMRLYGVRDMPTFRELAPSLPPSVLSTAKLRGLTLTQAPEMVAGMAEQETSAFLSVADVFPMQEREETGVGEAEKEEEGGEEGER---AQKEDR 347
The following BLAST results are available for this feature:
BLAST of NO05G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28199.11.100e-3738.64hypothetical protein Naga_100004g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01000NO05G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01000.1NO05G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01000.1.cds1NO05G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01000.1 ID=NO05G01000.1|Name=NO05G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2297bp
TTGTGATACTCATGGCCTTGATTACATGTACACTCAAAGTTTGCCTTCCC
AAGAGTAAACAAAACGCAGCTTGTGAGATAAAGATTACGATCATGTCGTT
TCGTTGGTCCCTTTGGGATCGTAAGCGTGCTCATACTGCAAGTCCATCAA
TCACCCACGCCTTCTCGCCGCCGCCTTTGGAGCGACGCAATGCAACGCAA
CGGACGAAGCAAACCACGCATCGCTCACCAAAGTCCGCAGCCAAAATATG
CATATGAGTCAAATCATTACTTGAGCATAGTTGGTTTAAGGCCATATAGC
GGGTCGGATCTTTGTCCAGCCCTGCAATTGCCTCCTAAAAACGACGTCTC
GTCCTTTTCGTTCCCGGCCCGCGCACCCACTTTGCCGTGTCTGCACACCT
GCGTAGCAAGTCTCGCCCACACGACGCAGACGTCCTTGGGGTGGATCTCG
CACGACGATAACAATCCCGACAGACAGGAATGAATAGCCCTGACCCCGAC
CCTTCCTATTCCTAACACACAGGCCGTTATTTTGTGTGAAGGTTATTACA
TTTTGTACTAATACTTTCCGTCACGCCACGCGTCACCCTTTGGAAAACCC
GCCTCCTCGACCTCGCCTCAACCATGTCCATCCGCAACCCCTTTATGCAA
TGGATCAATCAGTACGTGCGCCCTTACCTGCGAGAACGCCTGATGCCCTT
GTTGGAAGCTGAAGGAGCCGCTGCCCCCAAGAGGAAGAGCGGCAGCAGCA
CGCGGCTTGTCAGTCCTGTTGGTGCTAGCGCTGCCGGCAGCCAACACCAC
ATCTCTAAGCTCAGCGGTGACCAGACGAATAGCAGGGCGGGAAGTGTTAT
CTCTATGGACTCCCTTCTTCTCCAGCAGCAGCAATCTGCTGTCTTGGCCA
CGGCTCTTTCTGCCATCCATCGCCGTAAGGCGTCGGAGCATCAAGCAGAG
ATCCCTTCTGTCCCAACACAGAAGCAACAACACCAACACCAAGCTACTCG
TGCTACCCTTAAGATGGATCAGTTTCCCTCCTCCGCCCCGGAACAGCAGG
AGCAACAACAGCAGGTGTCCGCCCGCACCAAGATCCAAGTCAACGCCCCC
ACGACTAACGCTGGCGCCGATGTTGTCGCCGCCACTGCTACACCTGCTTC
TACAGCCCCCTCTTCTCCCTCTTCTCGTTTCAAGCGGTGTTACTACGTGC
CAGTCATGAACCCTTTGCCTGACTTGAAGGAGAAGCAGCTCGCTGTCTTA
GAGATGCCTCTGTACGGCATCCGCGATATGCCCACCTTCCGAGAGCTACT
TAATTCCCTCCCACCCTCTGTGATTTCGACAGCGAAGCTGAGGGGTCTGT
CCCTGTTGCAGGTACCGGAGATGGTGGCGTCGATGGAGGAGCAGAGCTCA
ACCGCTTTCTTGTCCGCGGGGGATGCCTTTCCCTTGCAGGAAGAGCTGGG
GAAGGGAAAAAGGAGGAAAGAGGTGGAGGGAGAGGAGGAAGAGGAGGAAG
AGGGCGTGGTAGAGAGGGAGGAGCGTTTGGCCTAGACGTTGGTTTGATGG
GGAGGGGGAGTGAATGGGAGGGAAGGGAGCGCGAGTTGGTTGGTACTGGC
GCGGCTGCAAGCTACGTGAGAAGGGTGGTTGAGAGGTCAAGTGTTCATGT
ACAAAAAAAGGTAGCATCATGCGTACGAAATCAGTAGGAGGAAGAGCCGC
AGCAGAAGAAGCAACTTCTTTCGTGGTTGTAAATAATGGATGGATAAACT
GAAACGGGGGAGGAGGGACAGGACGAAGGGATGGGGGCATGGATGTGAGA
TTTACGCCCTTTATTTTAACGTTCGTTTCCTACTATTTATTCCTCCTGGA
TGGATAGTGCTTTGGCTATGTCGAACAAGGTCGTCATCCAGCAGTAGTCA
TCACTGGCACTTTTTCATTATTGTTTTCAATTGATATCGTTATTTATGTT
TATTGGTCTGTCCGTCATCGTACGTCGACAAGAACTCGCCGTTTTCTCCA
CTTACGGATTTGACAAAGGAGGTCACTTTGGAAAGAGGACGAATATAATC
AAACTCGAGTATATATACTTCAAATGTCGTCTGTGGCAGCGGCTGTAACG
GCCCACCAGAGGGATGAGTCGAGCGCGCTAGATATAGTGAGGGAGATGCA
AACCTGTTTTGTGAGAAAATGTAATAAAAGTACTTCCAAAAGGGCAAACA
AGGGTGGAGGCAGACAAAGGCATTTGGATGACTCGTATGGGAAGACAGAG
GGAGCAGGCAAAGCACTTCCAATAAAGGAAAGAACTACGAGTATCGC
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protein sequence of NO05G01000.1

>NO05G01000.1-protein ID=NO05G01000.1-protein|Name=NO05G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MSIRNPFMQWINQYVRPYLRERLMPLLEAEGAAAPKRKSGSSTRLVSPVG
ASAAGSQHHISKLSGDQTNSRAGSVISMDSLLLQQQQSAVLATALSAIHR
RKASEHQAEIPSVPTQKQQHQHQATRATLKMDQFPSSAPEQQEQQQQVSA
RTKIQVNAPTTNAGADVVAATATPASTAPSSPSSRFKRCYYVPVMNPLPD
LKEKQLAVLEMPLYGIRDMPTFRELLNSLPPSVISTAKLRGLSLLQVPEM
VASMEEQSSTAFLSAGDAFPLQEELGKGKRRKEVEGEEEEEEEGVVEREE
RLA*
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mRNA from alignment at chr5:298514..300810+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01000.1 ID=NO05G01000.1|Name=NO05G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2297bp|location=Sequence derived from alignment at chr5:298514..300810+ (Nannochloropsis oceanica)
TTGTGATACTCATGGCCTTGATTACATGTACACTCAAAGTTTGCCTTCCC
AAGAGTAAACAAAACGCAGCTTGTGAGATAAAGATTACGATCATGTCGTT
TCGTTGGTCCCTTTGGGATCGTAAGCGTGCTCATACTGCAAGTCCATCAA
TCACCCACGCCTTCTCGCCGCCGCCTTTGGAGCGACGCAATGCAACGCAA
CGGACGAAGCAAACCACGCATCGCTCACCAAAGTCCGCAGCCAAAATATG
CATATGAGTCAAATCATTACTTGAGCATAGTTGGTTTAAGGCCATATAGC
GGGTCGGATCTTTGTCCAGCCCTGCAATTGCCTCCTAAAAACGACGTCTC
GTCCTTTTCGTTCCCGGCCCGCGCACCCACTTTGCCGTGTCTGCACACCT
GCGTAGCAAGTCTCGCCCACACGACGCAGACGTCCTTGGGGTGGATCTCG
CACGACGATAACAATCCCGACAGACAGGAATGAATAGCCCTGACCCCGAC
CCTTCCTATTCCTAACACACAGGCCGTTATTTTGTGTGAAGGTTATTACA
TTTTGTACTAATACTTTCCGTCACGCCACGCGTCACCCTTTGGAAAACCC
GCCTCCTCGACCTCGCCTCAACCATGTCCATCCGCAACCCCTTTATGCAA
TGGATCAATCAGTACGTGCGCCCTTACCTGCGAGAACGCCTGATGCCCTT
GTTGGAAGCTGAAGGAGCCGCTGCCCCCAAGAGGAAGAGCGGCAGCAGCA
CGCGGCTTGTCAGTCCTGTTGGTGCTAGCGCTGCCGGCAGCCAACACCAC
ATCTCTAAGCTCAGCGGTGACCAGACGAATAGCAGGGCGGGAAGTGTTAT
CTCTATGGACTCCCTTCTTCTCCAGCAGCAGCAATCTGCTGTCTTGGCCA
CGGCTCTTTCTGCCATCCATCGCCGTAAGGCGTCGGAGCATCAAGCAGAG
ATCCCTTCTGTCCCAACACAGAAGCAACAACACCAACACCAAGCTACTCG
TGCTACCCTTAAGATGGATCAGTTTCCCTCCTCCGCCCCGGAACAGCAGG
AGCAACAACAGCAGGTGTCCGCCCGCACCAAGATCCAAGTCAACGCCCCC
ACGACTAACGCTGGCGCCGATGTTGTCGCCGCCACTGCTACACCTGCTTC
TACAGCCCCCTCTTCTCCCTCTTCTCGTTTCAAGCGGTGTTACTACGTGC
CAGTCATGAACCCTTTGCCTGACTTGAAGGAGAAGCAGCTCGCTGTCTTA
GAGATGCCTCTGTACGGCATCCGCGATATGCCCACCTTCCGAGAGCTACT
TAATTCCCTCCCACCCTCTGTGATTTCGACAGCGAAGCTGAGGGGTCTGT
CCCTGTTGCAGGTACCGGAGATGGTGGCGTCGATGGAGGAGCAGAGCTCA
ACCGCTTTCTTGTCCGCGGGGGATGCCTTTCCCTTGCAGGAAGAGCTGGG
GAAGGGAAAAAGGAGGAAAGAGGTGGAGGGAGAGGAGGAAGAGGAGGAAG
AGGGCGTGGTAGAGAGGGAGGAGCGTTTGGCCTAGACGTTGGTTTGATGG
GGAGGGGGAGTGAATGGGAGGGAAGGGAGCGCGAGTTGGTTGGTACTGGC
GCGGCTGCAAGCTACGTGAGAAGGGTGGTTGAGAGGTCAAGTGTTCATGT
ACAAAAAAAGGTAGCATCATGCGTACGAAATCAGTAGGAGGAAGAGCCGC
AGCAGAAGAAGCAACTTCTTTCGTGGTTGTAAATAATGGATGGATAAACT
GAAACGGGGGAGGAGGGACAGGACGAAGGGATGGGGGCATGGATGTGAGA
TTTACGCCCTTTATTTTAACGTTCGTTTCCTACTATTTATTCCTCCTGGA
TGGATAGTGCTTTGGCTATGTCGAACAAGGTCGTCATCCAGCAGTAGTCA
TCACTGGCACTTTTTCATTATTGTTTTCAATTGATATCGTTATTTATGTT
TATTGGTCTGTCCGTCATCGTACGTCGACAAGAACTCGCCGTTTTCTCCA
CTTACGGATTTGACAAAGGAGGTCACTTTGGAAAGAGGACGAATATAATC
AAACTCGAGTATATATACTTCAAATGTCGTCTGTGGCAGCGGCTGTAACG
GCCCACCAGAGGGATGAGTCGAGCGCGCTAGATATAGTGAGGGAGATGCA
AACCTGTTTTGTGAGAAAATGTAATAAAAGTACTTCCAAAAGGGCAAACA
AGGGTGGAGGCAGACAAAGGCATTTGGATGACTCGTATGGGAAGACAGAG
GGAGCAGGCAAAGCACTTCCAATAAAGGAAAGAACTACGAGTATCGC
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Coding sequence (CDS) from alignment at chr5:298514..300810+

>NO05G01000.1 ID=NO05G01000.1|Name=NO05G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr5:298514..300810+ (Nannochloropsis oceanica)
ATGTCCATCCGCAACCCCTTTATGCAATGGATCAATCAGTACGTGCGCCC
TTACCTGCGAGAACGCCTGATGCCCTTGTTGGAAGCTGAAGGAGCCGCTG
CCCCCAAGAGGAAGAGCGGCAGCAGCACGCGGCTTGTCAGTCCTGTTGGT
GCTAGCGCTGCCGGCAGCCAACACCACATCTCTAAGCTCAGCGGTGACCA
GACGAATAGCAGGGCGGGAAGTGTTATCTCTATGGACTCCCTTCTTCTCC
AGCAGCAGCAATCTGCTGTCTTGGCCACGGCTCTTTCTGCCATCCATCGC
CGTAAGGCGTCGGAGCATCAAGCAGAGATCCCTTCTGTCCCAACACAGAA
GCAACAACACCAACACCAAGCTACTCGTGCTACCCTTAAGATGGATCAGT
TTCCCTCCTCCGCCCCGGAACAGCAGGAGCAACAACAGCAGGTGTCCGCC
CGCACCAAGATCCAAGTCAACGCCCCCACGACTAACGCTGGCGCCGATGT
TGTCGCCGCCACTGCTACACCTGCTTCTACAGCCCCCTCTTCTCCCTCTT
CTCGTTTCAAGCGGTGTTACTACGTGCCAGTCATGAACCCTTTGCCTGAC
TTGAAGGAGAAGCAGCTCGCTGTCTTAGAGATGCCTCTGTACGGCATCCG
CGATATGCCCACCTTCCGAGAGCTACTTAATTCCCTCCCACCCTCTGTGA
TTTCGACAGCGAAGCTGAGGGGTCTGTCCCTGTTGCAGGTACCGGAGATG
GTGGCGTCGATGGAGGAGCAGAGCTCAACCGCTTTCTTGTCCGCGGGGGA
TGCCTTTCCCTTGCAGGAAGAGCTGGGGAAGGGAAAAAGGAGGAAAGAGG
TGGAGGGAGAGGAGGAAGAGGAGGAAGAGGGCGTGGTAGAGAGGGAGGAG
CGTTTGGCCTAG
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Synonyms
Publications