NO05G00930, NO05G00930 (gene) Nannochloropsis oceanica

Overview
NameNO05G00930
Unique NameNO05G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1454
Alignment locationchr5:285239..286692 -

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Properties
Property NameValue
DescriptionU4/U6 small nuclear ribonucleoprotein SNU13
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:285239..286692 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR002415H/ACA_rnp_Nhp2_euk
IPR018492Ribosomal_L7Ae/L8/Nhp2
Homology
BLAST of NO05G00930 vs. NCBI_GenBank
Match: XP_005853693.1 (U4/U6 small nuclear ribonucleoprotein SNU13 [Nannochloropsis gaditana CCMP526] >EKU22664.1 U4/U6 small nuclear ribonucleoprotein SNU13 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.7 bits (626), Expect = 7.700e-62
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0
Query:    1 MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            MS GGEISKKAFPLASADLTVSILDL+QQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI
Sbjct:    1 MSNGGEISKKAFPLASADLTVSILDLVQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 129          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: CBJ48802.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 199.9 bits (507), Expect = 4.800e-48
Identity = 99/129 (76.74%), Postives = 117/129 (90.70%), Query Frame = 0
Query:    1 MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            M+E G ++ KA+PL   DLTV+ILDLIQQA+NYKQLKKGANEATK LNRGI+E I+MAADAEPLEILLHLPLLCEDKNVPYVFVP+K+ALGRACGV+RPV++C++ +NEASQLK QI +LKD+IE LLI
Sbjct:    1 MAEDG-VNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQIITLKDQIEQLLI 128          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: XP_009036290.1 (hypothetical protein AURANDRAFT_53454 [Aureococcus anophagefferens] >EGB09179.1 hypothetical protein AURANDRAFT_53454 [Aureococcus anophagefferens])

HSP 1 Score: 199.9 bits (507), Expect = 4.800e-48
Identity = 98/124 (79.03%), Postives = 116/124 (93.55%), Query Frame = 0
Query:    6 EISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            E++ KA+PLA A+L+V+ILDL+QQA NYKQLKKGANEATK+LNRGIAE I++AADAEPLEILLHLPLLCEDKNVPYVFV +K+ALGRACGV+RPVISC++ SNEASQLKDQI ++KD+IE LLI
Sbjct:    3 EVNPKAYPLADANLSVTILDLVQQACNYKQLKKGANEATKSLNRGIAEFIVLAADAEPLEILLHLPLLCEDKNVPYVFVASKLALGRACGVSRPVISCSVTSNEASQLKDQILTMKDKIEQLLI 126          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: XP_005787147.1 (hypothetical protein EMIHUDRAFT_460589 [Emiliania huxleyi CCMP1516] >EOD34718.1 hypothetical protein EMIHUDRAFT_460589 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 198.0 bits (502), Expect = 1.800e-47
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 0
Query:    5 GEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            GE + KAFPLA ++LTVSILD++QQA N+KQLKKGANEATK LNRGIAELI+MAADAEPLEILLHLPLLCEDKNVPYVFVP K ALGR+CGV+RPVISC+I +NE SQLK+QI  LKD IE LLI
Sbjct:    3 GEPNPKAFPLADSNLTVSILDVVQQAANFKQLKKGANEATKTLNRGIAELIVMAADAEPLEILLHLPLLCEDKNVPYVFVPNKQALGRSCGVSRPVISCSITTNEGSQLKNQIQQLKDSIEKLLI 127          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: PKA65428.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Apostasia shenzhenica])

HSP 1 Score: 197.2 bits (500), Expect = 3.100e-47
Identity = 97/129 (75.19%), Postives = 112/129 (86.82%), Query Frame = 0
Query:    1 MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            M++G +++ KA+PLA A LT++ILDLIQQA NYKQLKKGANEATK LNRGI+E ++MAAD EPLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTRPVI+C++ SNE SQLK QI  LKD IE LLI
Sbjct:    1 MTKGEQVNPKAYPLADAQLTITILDLIQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI 129          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: KFK22907.1 (hypothetical protein AALP_AAs68017U000400 [Arabis alpina])

HSP 1 Score: 196.4 bits (498), Expect = 5.300e-47
Identity = 96/123 (78.05%), Postives = 110/123 (89.43%), Query Frame = 0
Query:    7 ISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            ++ KA+PLA A L ++ILDL+QQA NYKQLKKGANEATK LNRGI+E ++MAADA+PLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTRPVI+C++LSNEASQLK QIN LKD IE LLI
Sbjct:    6 VNPKAYPLADAQLAITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADADPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVLSNEASQLKSQINQLKDAIEKLLI 128          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: XP_010420854.1 (PREDICTED: NHP2-like protein 1 [Camelina sativa] >XP_010454319.1 PREDICTED: NHP2-like protein 1 [Camelina sativa] >XP_010493123.1 PREDICTED: NHP2-like protein 1 [Camelina sativa])

HSP 1 Score: 196.1 bits (497), Expect = 7.000e-47
Identity = 97/126 (76.98%), Postives = 111/126 (88.10%), Query Frame = 0
Query:    4 GGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            G  ++ KA+PLA A L+++ILDL+QQA NYKQLKKGANEATK LNRGI+E ++MAADAEPLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTRPVI+C++ SNEASQLK QI SLKD IE LLI
Sbjct:    3 GEAVNPKAYPLADAQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKAQIQSLKDAIEKLLI 128          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: PPR88725.1 (hypothetical protein GOBAR_AA31966 [Gossypium barbadense])

HSP 1 Score: 194.9 bits (494), Expect = 1.600e-46
Identity = 97/129 (75.19%), Postives = 109/129 (84.50%), Query Frame = 0
Query:    1 MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            MS G  ++ KA+PLA A LT +ILDL+QQA NYKQLKKGANEATK LNRGI+E ++MAAD EPLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTRPVI+C++ SNE SQLK QI  LKD IE LLI
Sbjct:    1 MSTGEPVNPKAYPLADAQLTTTILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI 129          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: KFK26260.1 (hypothetical protein AALP_AA8G223900 [Arabis alpina])

HSP 1 Score: 194.5 bits (493), Expect = 2.000e-46
Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = 0
Query:    4 GGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            G  ++ KA+PLA A L ++ILDL+QQA NYKQLKKGANEATK LNRGI+E ++MAADAEPLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTR VI+C++LSNEASQLK QIN LKD IE LLI
Sbjct:    3 GEAVNPKAYPLADAQLAITILDLVQQACNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRSVIACSVLSNEASQLKTQINQLKDAIEKLLI 128          
BLAST of NO05G00930 vs. NCBI_GenBank
Match: XP_010541721.1 (PREDICTED: NHP2-like protein 1 [Tarenaya hassleriana])

HSP 1 Score: 194.5 bits (493), Expect = 2.000e-46
Identity = 96/123 (78.05%), Postives = 109/123 (88.62%), Query Frame = 0
Query:    7 ISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            ++ KA+PLA A LT++ILDL+QQA NYKQLKKGANEATK LNRGI+E ++MAADAEPLEILLHLPLL EDKNVPYVFVP+K ALGRACGVTRPVI+C++ SNEASQLK QI  LKD IE LLI
Sbjct:    6 VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLKDAIEKLLI 128          
The following BLAST results are available for this feature:
BLAST of NO05G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853693.17.700e-6298.45U4/U6 small nuclear ribonucleoprotein SNU13 [Nanno... [more]
CBJ48802.14.800e-4876.74conserved unknown protein [Ectocarpus siliculosus][more]
XP_009036290.14.800e-4879.03hypothetical protein AURANDRAFT_53454 [Aureococcus... [more]
XP_005787147.11.800e-4780.00hypothetical protein EMIHUDRAFT_460589 [Emiliania ... [more]
PKA65428.13.100e-4775.19H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
KFK22907.15.300e-4778.05hypothetical protein AALP_AAs68017U000400 [Arabis ... [more]
XP_010420854.17.000e-4776.98PREDICTED: NHP2-like protein 1 [Camelina sativa] >... [more]
PPR88725.11.600e-4675.19hypothetical protein GOBAR_AA31966 [Gossypium barb... [more]
KFK26260.12.000e-4676.98hypothetical protein AALP_AA8G223900 [Arabis alpin... [more]
XP_010541721.12.000e-4678.05PREDICTED: NHP2-like protein 1 [Tarenaya hassleria... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003783NSK003783Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00930.1NO05G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00930.1NO05G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00930 ID=NO05G00930|Name=NO05G00930|organism=Nannochloropsis oceanica|type=gene|length=1454bp
CGGCTATCCGACCGTCGCAAGCAAGATATGCTTACCCTTGGGACTCAAAA
CTCTCGGCTAAACAACGCATCACAGCGTCCGCAAGGTCTTTAAGATGTGC
ATGTAGGGCTCGTCGCCATGCTGGTGGTAGTTGTGCTGCTGGCCGTAGTG
CGAAGAGAAACGCGAAGCGCATTTCATTAGCCTCCCCACCCTTCACCCAC
CACCCATCATCCTTCCAGCATCAACTCCCCACCCCATCGTCCGTCTGACC
ATGCTCTCCCTCTATCTTGTCCGCATAAATAAACACAGACACACAAGCAG
TGTCTGCATATCTACCCCAGTAAGACCAGCAGCATCATGAGTGAAGGTGG
CGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGCTGACCTGACTGTCT
CGATTTTGGACCTCATTCAGCAAGCCAACAACTACAAGCAGCTTAAAAAG
GGAGCCAACGAAGgtaaggattgaaaccgagggactgaaaggagggaaga
cgatcgagaaagcggaaaatggcaatcaccagaaagctgtgtggcagtct
cggagatggcgtgcaggcgagctagagggacatcaggaaggaaggaggac
cggaggatgggtgggttgggtttgattaagaggagtaagaagaagatgag
acgattgcggtatcctcatgtctttacgtctgtccaagactcaatattcg
cgattggtaatcgcctcacccccctctctccttctcccctcgcacagCCA
CCAAGGCATTGAACCGCGGCATCGCCGAGCTCATCATCATGGCCGCCGAC
GCTGAGCCGCTTGAAATTCTGTTGCACCTACCGTTGTTGTGTGAGGATAA
Ggtaatgttagatagaacgacaagcgggagggtgggagagtgagcgcggg
ggatgggatacggtagtatcaactctacaacatataggacataatttttg
ctcctcgcacctgtgttataatctagtgcatccatgtgtcctcactcatg
atagtattgcttcatttttgaataaccattcttccctttcctcctctcct
cctttcctcccttcctccttccctatccagAATGTCCCCTACGTCTTCGT
TCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTTA
TCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGATC
AACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAAAGCGAAAGTAG
GGAGGGATGGGATGGCTATTTGTTAATATAAGGAGGAAAAGCACGGCACG
ACCGCCGCGCCTGCATTATGGAGACAGATACTCCCTCCAGCGCTTGCTCT
TTATTCAGTTGTGTAGAGGGCTAGAATGAAGGAAAACTTCAAGAAGCAGG
AGAGCAAAAAGAAGAACAAAGAAGAAAAAAAGAATAAGAACAATCCCATC
GTGA
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protein sequence of NO05G00930.1

>NO05G00930.1-protein ID=NO05G00930.1-protein|Name=NO05G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRG
IAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPV
ISCAILSNEASQLKDQINSLKDRIEALLI*
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Synonyms
Publications