NO05G00930.1, NO05G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00930.1
Unique NameNO05G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length941
Alignment locationchr5:285239..286692 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:285239..286692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00930.1 vs.
Match: XP_005853693.1 (U4/U6 small nuclear ribonucleoprotein SNU13 [Nannochloropsis gaditana CCMP526]; EKU22664.1 U4/U6 small nuclear ribonucleoprotein SNU13 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.7 bits (626), Expect = 7.700e-62
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 0 
Query:    1 MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 130
            MS GGEISKKAFPLASADLTVSILDL+QQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI
Sbjct:    1 MSNGGEISKKAFPLASADLTVSILDLVQQANNYKQLKKGANEATKALNRGIAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPVISCAILSNEASQLKDQINSLKDRIEALLI 129
The following BLAST results are available for this feature:
BLAST of NO05G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853693.17.700e-6298.45U4/U6 small nuclear ribonucleoprotein SNU13 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00930NO05G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00930.1NO05G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00930.1.cds1NO05G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00930.1.cds2NO05G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00930.1.cds3NO05G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00930.1 ID=NO05G00930.1|Name=NO05G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=941bp
CGGCTATCCGACCGTCGCAAGCAAGATATGCTTACCCTTGGGACTCAAAA
CTCTCGGCTAAACAACGCATCACAGCGTCCGCAAGGTCTTTAAGATGTGC
ATGTAGGGCTCGTCGCCATGCTGGTGGTAGTTGTGCTGCTGGCCGTAGTG
CGAAGAGAAACGCGAAGCGCATTTCATTAGCCTCCCCACCCTTCACCCAC
CACCCATCATCCTTCCAGCATCAACTCCCCACCCCATCGTCCGTCTGACC
ATGCTCTCCCTCTATCTTGTCCGCATAAATAAACACAGACACACAAGCAG
TGTCTGCATATCTACCCCAGTAAGACCAGCAGCATCATGAGTGAAGGTGG
CGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGCTGACCTGACTGTCT
CGATTTTGGACCTCATTCAGCAAGCCAACAACTACAAGCAGCTTAAAAAG
GGAGCCAACGAAGCCACCAAGGCATTGAACCGCGGCATCGCCGAGCTCAT
CATCATGGCCGCCGACGCTGAGCCGCTTGAAATTCTGTTGCACCTACCGT
TGTTGTGTGAGGATAAGAATGTCCCCTACGTCTTCGTTCCGGCCAAGATT
GCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTTATCTCTTGTGCAAT
CCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGATCAACTCCTTGAAAG
ATCGGATCGAAGCCCTTTTGATTTAAAGCGAAAGTAGGGAGGGATGGGAT
GGCTATTTGTTAATATAAGGAGGAAAAGCACGGCACGACCGCCGCGCCTG
CATTATGGAGACAGATACTCCCTCCAGCGCTTGCTCTTTATTCAGTTGTG
TAGAGGGCTAGAATGAAGGAAAACTTCAAGAAGCAGGAGAGCAAAAAGAA
GAACAAAGAAGAAAAAAAGAATAAGAACAATCCCATCGTGA
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protein sequence of NO05G00930.1

>NO05G00930.1-protein ID=NO05G00930.1-protein|Name=NO05G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRG
IAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPV
ISCAILSNEASQLKDQINSLKDRIEALLI*
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mRNA from alignment at chr5:285239..286692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00930.1 ID=NO05G00930.1|Name=NO05G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp|location=Sequence derived from alignment at chr5:285239..286692- (Nannochloropsis oceanica)
CGGCTATCCGACCGTCGCAAGCAAGATATGCTTACCCTTGGGACTCAAAA
CTCTCGGCTAAACAACGCATCACAGCGTCCGCAAGGTCTTTAAGATGTGC
ATGTAGGGCTCGTCGCCATGCTGGTGGTAGTTGTGCTGCTGGCCGTAGTG
CGAAGAGAAACGCGAAGCGCATTTCATTAGCCTCCCCACCCTTCACCCAC
CACCCATCATCCTTCCAGCATCAACTCCCCACCCCATCGTCCGTCTGACC
ATGCTCTCCCTCTATCTTGTCCGCATAAATAAACACAGACACACAAGCAG
TGTCTGCATATCTACCCCAGTAAGACCAGCAGCATCATGAGTGAAGGTGG
CGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGCTGACCTGACTGTCT
CGATTTTGGACCTCATTCAGCAAGCCAACAACTACAAGCAGCTTAAAAAG
GGAGCCAACGAAGGTAAGGATTGAAACCGAGGGACTGAAAGGAGGGAAGA
CGATCGAGAAAGCGGAAAATGGCAATCACCAGAAAGCTGTGTGGCAGTCT
CGGAGATGGCGTGCAGGCGAGCTAGAGGGACATCAGGAAGGAAGGAGGAC
CGGAGGATGGGTGGGTTGGGTTTGATTAAGAGGAGTAAGAAGAAGATGAG
ACGATTGCGGTATCCTCATGTCTTTACGTCTGTCCAAGACTCAATATTCG
CGATTGGTAATCGCCTCACCCCCCTCTCTCCTTCTCCCCTCGCACAGCCA
CCAAGGCATTGAACCGCGGCATCGCCGAGCTCATCATCATGGCCGCCGAC
GCTGAGCCGCTTGAAATTCTGTTGCACCTACCGTTGTTGTGTGAGGATAA
GGTAATGTTAGATAGAACGACAAGCGGGAGGGTGGGAGAGTGAGCGCGGG
GGATGGGATACGGTAGTATCAACTCTACAACATATAGGACATAATTTTTG
CTCCTCGCACCTGTGTTATAATCTAGTGCATCCATGTGTCCTCACTCATG
ATAGTATTGCTTCATTTTTGAATAACCATTCTTCCCTTTCCTCCTCTCCT
CCTTTCCTCCCTTCCTCCTTCCCTATCCAGAATGTCCCCTACGTCTTCGT
TCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTTA
TCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGATC
AACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAAAGCGAAAGTAG
GGAGGGATGGGATGGCTATTTGTTAATATAAGGAGGAAAAGCACGGCACG
ACCGCCGCGCCTGCATTATGGAGACAGATACTCCCTCCAGCGCTTGCTCT
TTATTCAGTTGTGTAGAGGGCTAGAATGAAGGAAAACTTCAAGAAGCAGG
AGAGCAAAAAGAAGAACAAAGAAGAAAAAAAGAATAAGAACAATCCCATC
GTGA
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Coding sequence (CDS) from alignment at chr5:285239..286692-

>NO05G00930.1 ID=NO05G00930.1|Name=NO05G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr5:285239..286692- (Nannochloropsis oceanica)
ATGAGTGAAGGTGGCGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGC
TGACCTGACTGTCTCGATTTTGGACCTCATTCAGCAAGCCAACAACTACA
AGCAGCTTAAAAAGGGAGCCAACGAAGCCACCAAGGCATTGAACCGCGGC
ATCGCCGAGCTCATCATCATGGCCGCCGACGCTGAGCCGCTTGAAATTCT
GTTGCACCTACCGTTGTTGTGTGAGGATAAGAATGTCCCCTACGTCTTCG
TTCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTT
ATCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGAT
CAACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAA
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Synonyms
Publications