NO05G00850, NO05G00850 (gene) Nannochloropsis oceanica

Overview
NameNO05G00850
Unique NameNO05G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr5:265104..266708 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:265104..266708 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00850 vs. NCBI_GenBank
Match: EWM28288.1 (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.600e-68
Identity = 144/307 (46.91%), Postives = 201/307 (65.47%), Query Frame = 0 
Query:   97 ANEKPLPSQEIAFPWRSAPHK----RLSSFEAIFKNTINILPQSYIRGRLLQVLSMRMDTSPQAITELLYRSTRFAFIQAVRGIFDGQCKTPPPTWEYSKDEEKPPSSDWELGYPILADMMDDRLTEIYQDVTARFKANKRDVRLELESVNPIAMDDFKLLIGPPRGMPLPKGFEEVEVLGIGVVVGKSPPEQEG--FGVMGRWAVEQSRTVPKSNFHLRFQMAVTFKCREMFVVTNEETEEVVQGEEGVVREVEHVARFEIEFDRRAQVSQDWRLIDIDGWSNGDKYRAAGKKVNGEAPTDVPREG 398
            A++KPLP QE+AFPWR AP +    R +S+   F     IL Q+ +RG   ++LS  M+  P+A+ E L+R  RFAFIQ VRGIFDGQCKTP PT E+S+++  PPSS W++GYP L+ MMD+ L   Y+DV ARFKANKR+VRLELES+ P+AM D+++ +GPPRG P      + +  G+       P + +G     +  +    SR  P+  FH+    AVTF+CRE+F V N +T EV+QGE+G +REV+HVARF++E D++AQV+QDWR++DIDGW+   +      +     P+   REG
Sbjct:  127 ASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWF---TQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGL-TTFSDQPIDIDGPMTDTLAAYVRVMSRN-PRIGFHI----AVTFRCRELFCVRNTDTGEVLQGEDG-IREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVEEDEEEKGEPSGDRREG 423
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BLAST of NO05G00850 vs. NCBI_GenBank
Match: EWM28221.1 (hypothetical protein Naga_100004g22 [Nannochloropsis gaditana])

HSP 1 Score: 181.0 bits (458), Expect = 7.300e-42
Identity = 102/276 (36.96%), Postives = 162/276 (58.70%), Query Frame = 0 
Query:  109 FPWRSAPHKRLSSF----EAIFKNTINILPQSYIRGRLLQVLSMRMDTSPQAITELLYRSTRFAFIQAVRGIFDGQCKTPPPTWEYSKDEEKPPSSDWELGYPILADMMDDRLTEIYQDVTARFKANKRDVRLELESVNPIAMDDFKLLIGPPRGMPLPKGFEEVEVLGIGVVVGK--SPPEQEGFGVMGRWAVEQSRTVPKSNFHLRFQMAVTFKCREMFVVTNEETEEVVQGEEGVVREVEHVARFEIEFDRRAQVSQDWRLIDIDGWSNGDKY 379
            FPW SAP   +S+F    +++F+     L    +R  L + ++M  +   + +   L  STRFAFIQAVR IF+G CKTP PTW+ +  + + PSS+WELGYP L+ MM+ +L  +Y+++ + F+A   +VR ELES+  +++  F+ ++G       P+    V +  + +V GK  + P +           E+   VP S   + ++MAVTF+CRE+F V N  T EV+QGE+  ++EV+HVARFE++ D   +   +W L+DID    G++Y
Sbjct:  127 FPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPER-SSVNIGALSLVFGKPVTVPSES----------ERKEPVPIS---ILYRMAVTFRCRELFTVRNSGTGEVLQGEDR-MKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEY 387
The following BLAST results are available for this feature:
BLAST of NO05G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28288.11.600e-6846.91hypothetical protein Naga_100004g21 [Nannochlorops... [more]
EWM28221.17.300e-4236.96hypothetical protein Naga_100004g22 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00850.1NO05G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00850.1NO05G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00850 ID=NO05G00850|Name=NO05G00850|organism=Nannochloropsis oceanica|type=gene|length=1605bp
ACAGTAGACACAGGAGGTCAAAACTCGTCCGGGAAGTCTGCCAGCGCAGC
AGCCGGGAGACCATGATGCGTGCCCTGGCGCAGTCCGCGGGGTCACGCAA
TCTAGTCAACCTCGGCACTCGAGGCAGCAGCAATGCCGTCGTCCGGAGAT
GGTCACGCTCTCCATCCTCTGTTTCATCGGGTCCTGGTCGCCTCAACTAC
CTCTTCTTCCAAGAACAACAACAACGAGGCATTTCCTCGTCCTCCTCCTC
CCCCCCGGCCGCCACTACCAGCACGACCAAGGCAAGCACGCCTAACCCTG
GCGGAGCCACCGCTTTGCCAGACGATGTCATCGTGGAGGATGACGAGGAC
GCAAACGAAAAGCCCCTCCCGTCCCAAGAAATTGCCTTCCCCTGGCGGTC
CGCCCCTCACAAACGCCTCTCCTCCTTCGAGGCCATCTTCAAAAACACCA
TCAACATCCTTCCTCAGTCTTATATCCGGGGCCGCCTCCTTCAGGTCCTC
TCCATGCGGATGGATACTTCTCCCCAAGCAATTACTGAGCTTCTGTATCG
CTCCACCCGCTTCGCTTTCATCCAGGCTGTCCGCGGAATCTTCGACGGGC
AATGCAAGACCCCTCCACCTACTTGGGAGTACAGCAAGGACGAAGAAAAG
CCCCCTTCTTCTGACTGGGAGTTGGGTTATCCCATCCTTGCTGACATGAT
GGACGATCGACTCACAGAGATATACCAAGATGTCACCGCCCGATTCAAGG
CCAATAAACGCGACGTTCGATTAGAGTTGGAAAGCGTCAATCCCATTGCC
ATGGACGACTTCAAGCTATTAATTGGGCCCCCACGAGGCATGCCCTTGCC
GAAAGGGTTCGAAGAGGTGGAAGTGTTGGGCATTGGGGTAGTTGTTGGCA
AGTCGCCTCCGGAGCAGGAAGGGTTTGGCGTCATGGGTCGTTGGGCGGTG
GAGCAGTCACGGACGGTGCCAAAGTCGAATTTCCATTTGAGGTTTCAGAT
GGCGGTGACTTTTAAGTGTAGAGAGATGTTTGTTGTGACGAATGAGGAGA
CCGAGGAGGTGGTGCAGGGGGAGGAAGGGGTGGTGAGGGAGGTCGAGCAT
GTGGCACGGTTTGAGATTGAGTTTGATAGACGCGCGCAGgtgagaaagag
agggggagggagggagagagggagggagagaaacgcggaaagatgcatgt
gtacatgcttgcggtgcactccacatatctatgacaggattgagatgtaa
accttaaaggtaacctccctttctctcccatccccccctttcgtattcct
tcctccctgagtagGTGTCGCAAGATTGGCGACTTATCGATATTGACGGT
TGGAGCAACGGAGATAAGTACAGAGCTGCCGGCAAGAAAGTCAATGGAGA
GGCACCGACGGATGTGCCAAGGGAAGGTGGGCGGGAGGGGGGGCGGAAGC
TTAACTGAGCGGGAATGGAAAATGAGGAGGAATCGGAAGGTACGGCAAAT
TACAAACTTAGTAAATAGATGAGAGGTTGACGGTGTAAATAGGTTGGAAG
TGGTACCGCAATACTCACACAGAGAAGGAAAGAGACGACGACGAGTGAAA
CGAAA
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protein sequence of NO05G00850.1

>NO05G00850.1-protein ID=NO05G00850.1-protein|Name=NO05G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MMRALAQSAGSRNLVNLGTRGSSNAVVRRWSRSPSSVSSGPGRLNYLFFQ
EQQQRGISSSSSSPPAATTSTTKASTPNPGGATALPDDVIVEDDEDANEK
PLPSQEIAFPWRSAPHKRLSSFEAIFKNTINILPQSYIRGRLLQVLSMRM
DTSPQAITELLYRSTRFAFIQAVRGIFDGQCKTPPPTWEYSKDEEKPPSS
DWELGYPILADMMDDRLTEIYQDVTARFKANKRDVRLELESVNPIAMDDF
KLLIGPPRGMPLPKGFEEVEVLGIGVVVGKSPPEQEGFGVMGRWAVEQSR
TVPKSNFHLRFQMAVTFKCREMFVVTNEETEEVVQGEEGVVREVEHVARF
EIEFDRRAQVSQDWRLIDIDGWSNGDKYRAAGKKVNGEAPTDVPREGGRE
GGRKLN*
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Synonyms
Publications