NO05G00850.1, NO05G00850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00850.1
Unique NameNO05G00850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1430
Alignment locationchr5:265104..266708 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:265104..266708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00850.1 vs.
Match: EWM28288.1 (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 8.200e-70
Identity = 175/405 (43.21%), Postives = 242/405 (59.75%), Query Frame = 0 
Query:   22 SSNAVVRRWSRSPSS-------VSSGPGRLNYLFFQEQQQRGISSSSSSPPA---ATTSTTKASTP---------NPGG---ATALPDDVIVEDDEDANEKPLPSQEIAFPWRSAPHK----RLSSFEAIFKNTINILPQSYIRGRLLQVLSMRMDTSPQAITELLYRSTRFAFIQAVRGIFDGQCKTPPPTWEYSKDEEKPPSSDWELGYPILADMMDDRLTEIYQDVTARFKANKRDVRLELESVNPIAMDDFKLLIGPPRGMPLPKGFEEVEVLGIGVVVGKSPPEQEG--FGVMGRWAVEQSRTVPKSNFHLRFQMAVTFKCREMFVVTNEETEEVVQGEEGVVREVEHVARFEIEFDRRAQVSQDWRLIDIDGWSNGDKYRAAGKKVNGEAPTDVPREGG 399
            S N  +RR  RS SS       V+S  G+          +R  S + SS P+   A +ST KAS           + GG   A A P D+   DD +A++KPLP QE+AFPWR AP +    R +S+   F     IL Q+ +RG   ++LS  M+  P+A+ E L+R  RFAFIQ VRGIFDGQCKTP PT E+S+++  PPSS W++GYP L+ MMD+ L   Y+DV ARFKANKR+VRLELES+ P+AM D+++ +GPPRG P      + +  G+       P + +G     +  +    SR  P+  FH+    AVTF+CRE+F V N +T EV+QGE+G +REV+HVARF++E D++AQV+QDWR++DIDGW+   +      +     P+   REGG
Sbjct:   31 SCNRPLRRAWRSLSSFPPTSPLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEASASSRLSGGGGEAAAASPVDITFIDD-NASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWFTQ---ILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGL-TTFSDQPIDIDGPMTDTLAAYVRVMSRN-PRIGFHI----AVTFRCRELFCVRNTDTGEVLQGEDG-IREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVEEDEEEKGEPSGDRREGG 424
The following BLAST results are available for this feature:
BLAST of NO05G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28288.18.200e-7043.21hypothetical protein Naga_100004g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00850NO05G00850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00850.1NO05G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00850.1.cds1NO05G00850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00850.1.cds2NO05G00850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00850.1 ID=NO05G00850.1|Name=NO05G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
ACAGTAGACACAGGAGGTCAAAACTCGTCCGGGAAGTCTGCCAGCGCAGC
AGCCGGGAGACCATGATGCGTGCCCTGGCGCAGTCCGCGGGGTCACGCAA
TCTAGTCAACCTCGGCACTCGAGGCAGCAGCAATGCCGTCGTCCGGAGAT
GGTCACGCTCTCCATCCTCTGTTTCATCGGGTCCTGGTCGCCTCAACTAC
CTCTTCTTCCAAGAACAACAACAACGAGGCATTTCCTCGTCCTCCTCCTC
CCCCCCGGCCGCCACTACCAGCACGACCAAGGCAAGCACGCCTAACCCTG
GCGGAGCCACCGCTTTGCCAGACGATGTCATCGTGGAGGATGACGAGGAC
GCAAACGAAAAGCCCCTCCCGTCCCAAGAAATTGCCTTCCCCTGGCGGTC
CGCCCCTCACAAACGCCTCTCCTCCTTCGAGGCCATCTTCAAAAACACCA
TCAACATCCTTCCTCAGTCTTATATCCGGGGCCGCCTCCTTCAGGTCCTC
TCCATGCGGATGGATACTTCTCCCCAAGCAATTACTGAGCTTCTGTATCG
CTCCACCCGCTTCGCTTTCATCCAGGCTGTCCGCGGAATCTTCGACGGGC
AATGCAAGACCCCTCCACCTACTTGGGAGTACAGCAAGGACGAAGAAAAG
CCCCCTTCTTCTGACTGGGAGTTGGGTTATCCCATCCTTGCTGACATGAT
GGACGATCGACTCACAGAGATATACCAAGATGTCACCGCCCGATTCAAGG
CCAATAAACGCGACGTTCGATTAGAGTTGGAAAGCGTCAATCCCATTGCC
ATGGACGACTTCAAGCTATTAATTGGGCCCCCACGAGGCATGCCCTTGCC
GAAAGGGTTCGAAGAGGTGGAAGTGTTGGGCATTGGGGTAGTTGTTGGCA
AGTCGCCTCCGGAGCAGGAAGGGTTTGGCGTCATGGGTCGTTGGGCGGTG
GAGCAGTCACGGACGGTGCCAAAGTCGAATTTCCATTTGAGGTTTCAGAT
GGCGGTGACTTTTAAGTGTAGAGAGATGTTTGTTGTGACGAATGAGGAGA
CCGAGGAGGTGGTGCAGGGGGAGGAAGGGGTGGTGAGGGAGGTCGAGCAT
GTGGCACGGTTTGAGATTGAGTTTGATAGACGCGCGCAGGTGTCGCAAGA
TTGGCGACTTATCGATATTGACGGTTGGAGCAACGGAGATAAGTACAGAG
CTGCCGGCAAGAAAGTCAATGGAGAGGCACCGACGGATGTGCCAAGGGAA
GGTGGGCGGGAGGGGGGGCGGAAGCTTAACTGAGCGGGAATGGAAAATGA
GGAGGAATCGGAAGGTACGGCAAATTACAAACTTAGTAAATAGATGAGAG
GTTGACGGTGTAAATAGGTTGGAAGTGGTACCGCAATACTCACACAGAGA
AGGAAAGAGACGACGACGAGTGAAACGAAA
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protein sequence of NO05G00850.1

>NO05G00850.1-protein ID=NO05G00850.1-protein|Name=NO05G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MMRALAQSAGSRNLVNLGTRGSSNAVVRRWSRSPSSVSSGPGRLNYLFFQ
EQQQRGISSSSSSPPAATTSTTKASTPNPGGATALPDDVIVEDDEDANEK
PLPSQEIAFPWRSAPHKRLSSFEAIFKNTINILPQSYIRGRLLQVLSMRM
DTSPQAITELLYRSTRFAFIQAVRGIFDGQCKTPPPTWEYSKDEEKPPSS
DWELGYPILADMMDDRLTEIYQDVTARFKANKRDVRLELESVNPIAMDDF
KLLIGPPRGMPLPKGFEEVEVLGIGVVVGKSPPEQEGFGVMGRWAVEQSR
TVPKSNFHLRFQMAVTFKCREMFVVTNEETEEVVQGEEGVVREVEHVARF
EIEFDRRAQVSQDWRLIDIDGWSNGDKYRAAGKKVNGEAPTDVPREGGRE
GGRKLN*
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mRNA from alignment at chr5:265104..266708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00850.1 ID=NO05G00850.1|Name=NO05G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp|location=Sequence derived from alignment at chr5:265104..266708+ (Nannochloropsis oceanica)
ACAGTAGACACAGGAGGTCAAAACTCGTCCGGGAAGTCTGCCAGCGCAGC
AGCCGGGAGACCATGATGCGTGCCCTGGCGCAGTCCGCGGGGTCACGCAA
TCTAGTCAACCTCGGCACTCGAGGCAGCAGCAATGCCGTCGTCCGGAGAT
GGTCACGCTCTCCATCCTCTGTTTCATCGGGTCCTGGTCGCCTCAACTAC
CTCTTCTTCCAAGAACAACAACAACGAGGCATTTCCTCGTCCTCCTCCTC
CCCCCCGGCCGCCACTACCAGCACGACCAAGGCAAGCACGCCTAACCCTG
GCGGAGCCACCGCTTTGCCAGACGATGTCATCGTGGAGGATGACGAGGAC
GCAAACGAAAAGCCCCTCCCGTCCCAAGAAATTGCCTTCCCCTGGCGGTC
CGCCCCTCACAAACGCCTCTCCTCCTTCGAGGCCATCTTCAAAAACACCA
TCAACATCCTTCCTCAGTCTTATATCCGGGGCCGCCTCCTTCAGGTCCTC
TCCATGCGGATGGATACTTCTCCCCAAGCAATTACTGAGCTTCTGTATCG
CTCCACCCGCTTCGCTTTCATCCAGGCTGTCCGCGGAATCTTCGACGGGC
AATGCAAGACCCCTCCACCTACTTGGGAGTACAGCAAGGACGAAGAAAAG
CCCCCTTCTTCTGACTGGGAGTTGGGTTATCCCATCCTTGCTGACATGAT
GGACGATCGACTCACAGAGATATACCAAGATGTCACCGCCCGATTCAAGG
CCAATAAACGCGACGTTCGATTAGAGTTGGAAAGCGTCAATCCCATTGCC
ATGGACGACTTCAAGCTATTAATTGGGCCCCCACGAGGCATGCCCTTGCC
GAAAGGGTTCGAAGAGGTGGAAGTGTTGGGCATTGGGGTAGTTGTTGGCA
AGTCGCCTCCGGAGCAGGAAGGGTTTGGCGTCATGGGTCGTTGGGCGGTG
GAGCAGTCACGGACGGTGCCAAAGTCGAATTTCCATTTGAGGTTTCAGAT
GGCGGTGACTTTTAAGTGTAGAGAGATGTTTGTTGTGACGAATGAGGAGA
CCGAGGAGGTGGTGCAGGGGGAGGAAGGGGTGGTGAGGGAGGTCGAGCAT
GTGGCACGGTTTGAGATTGAGTTTGATAGACGCGCGCAGGTGAGAAAGAG
AGGGGGAGGGAGGGAGAGAGGGAGGGAGAGAAACGCGGAAAGATGCATGT
GTACATGCTTGCGGTGCACTCCACATATCTATGACAGGATTGAGATGTAA
ACCTTAAAGGTAACCTCCCTTTCTCTCCCATCCCCCCCTTTCGTATTCCT
TCCTCCCTGAGTAGGTGTCGCAAGATTGGCGACTTATCGATATTGACGGT
TGGAGCAACGGAGATAAGTACAGAGCTGCCGGCAAGAAAGTCAATGGAGA
GGCACCGACGGATGTGCCAAGGGAAGGTGGGCGGGAGGGGGGGCGGAAGC
TTAACTGAGCGGGAATGGAAAATGAGGAGGAATCGGAAGGTACGGCAAAT
TACAAACTTAGTAAATAGATGAGAGGTTGACGGTGTAAATAGGTTGGAAG
TGGTACCGCAATACTCACACAGAGAAGGAAAGAGACGACGACGAGTGAAA
CGAAA
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Coding sequence (CDS) from alignment at chr5:265104..266708+

>NO05G00850.1 ID=NO05G00850.1|Name=NO05G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr5:265104..266708+ (Nannochloropsis oceanica)
ATGATGCGTGCCCTGGCGCAGTCCGCGGGGTCACGCAATCTAGTCAACCT
CGGCACTCGAGGCAGCAGCAATGCCGTCGTCCGGAGATGGTCACGCTCTC
CATCCTCTGTTTCATCGGGTCCTGGTCGCCTCAACTACCTCTTCTTCCAA
GAACAACAACAACGAGGCATTTCCTCGTCCTCCTCCTCCCCCCCGGCCGC
CACTACCAGCACGACCAAGGCAAGCACGCCTAACCCTGGCGGAGCCACCG
CTTTGCCAGACGATGTCATCGTGGAGGATGACGAGGACGCAAACGAAAAG
CCCCTCCCGTCCCAAGAAATTGCCTTCCCCTGGCGGTCCGCCCCTCACAA
ACGCCTCTCCTCCTTCGAGGCCATCTTCAAAAACACCATCAACATCCTTC
CTCAGTCTTATATCCGGGGCCGCCTCCTTCAGGTCCTCTCCATGCGGATG
GATACTTCTCCCCAAGCAATTACTGAGCTTCTGTATCGCTCCACCCGCTT
CGCTTTCATCCAGGCTGTCCGCGGAATCTTCGACGGGCAATGCAAGACCC
CTCCACCTACTTGGGAGTACAGCAAGGACGAAGAAAAGCCCCCTTCTTCT
GACTGGGAGTTGGGTTATCCCATCCTTGCTGACATGATGGACGATCGACT
CACAGAGATATACCAAGATGTCACCGCCCGATTCAAGGCCAATAAACGCG
ACGTTCGATTAGAGTTGGAAAGCGTCAATCCCATTGCCATGGACGACTTC
AAGCTATTAATTGGGCCCCCACGAGGCATGCCCTTGCCGAAAGGGTTCGA
AGAGGTGGAAGTGTTGGGCATTGGGGTAGTTGTTGGCAAGTCGCCTCCGG
AGCAGGAAGGGTTTGGCGTCATGGGTCGTTGGGCGGTGGAGCAGTCACGG
ACGGTGCCAAAGTCGAATTTCCATTTGAGGTTTCAGATGGCGGTGACTTT
TAAGTGTAGAGAGATGTTTGTTGTGACGAATGAGGAGACCGAGGAGGTGG
TGCAGGGGGAGGAAGGGGTGGTGAGGGAGGTCGAGCATGTGGCACGGTTT
GAGATTGAGTTTGATAGACGCGCGCAGGTGTCGCAAGATTGGCGACTTAT
CGATATTGACGGTTGGAGCAACGGAGATAAGTACAGAGCTGCCGGCAAGA
AAGTCAATGGAGAGGCACCGACGGATGTGCCAAGGGAAGGTGGGCGGGAG
GGGGGGCGGAAGCTTAACTGA
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Synonyms
Publications