NO05G00800, NO05G00800 (gene) Nannochloropsis oceanica

Overview
NameNO05G00800
Unique NameNO05G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1629
Alignment locationchr5:253856..255484 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:253856..255484 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G00800 vs. NCBI_GenBank
Match: EWM28220.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 767.7 bits (1981), Expect = 2.400e-218
Identity = 391/483 (80.95%), Postives = 426/483 (88.20%), Query Frame = 0
Query:   60 SALDFLEHVRGGGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAARPEKMFNQALIAVGVIFACLGAYAAIDDQFGIFSGTGPKMHVH 543
            S+  FL+ VRGG +SPKA+S P K    S   AG ++AHHGL+++SLAINIMADLCPHGMLPLAFGMASEGGTGL PAL+LL++FGSLSAYTLISIARACEATGEYSFRGIWSRTL PSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPA+LHKRW+CLVALH+FPL PLCLMKNLSALQYSSIVGV GILYTTAFVVKRQ DG+Y   G FH+LID VYRP  PS++A EK+FRLGPGAISLMNMACVAFTTHYNGIAYYTELKDR L RY+ AVGLGFLASFSVFALMM FGF TFG AAQPLLLNNYHRT+DALATGSRLATAFSI+CGFPLMFAGLKTGFFSLW S+V  +RRLS   + AL S+ V  T+S +LLAAICGIAC CTEEDVGFVIG+IGAVLGT VVYIIPALLNTKLLARVKD   A+PEK FNQ LI +GV+FA LG Y AIDDQFGIFSG GPK+H+H
Sbjct: 1108 SSCRFLKRVRGGAASPKASSIPIKT--TSHVTAGTTEAHHGLSVTSLAINIMADLCPHGMLPLAFGMASEGGTGLVPALSLLVLFGSLSAYTLISIARACEATGEYSFRGIWSRTLHPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPAVLHKRWLCLVALHIFPLWPLCLMKNLSALQYSSIVGVFGILYTTAFVVKRQCDGSYGPSGHFHALIDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVGLGFLASFSVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFSLWHSNVESARRLSPRLRVALKSDTVIATVSSLLLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTGVAKPEKRFNQGLIVIGVVFALLGTYMAIDDQFGIFSGRGPKVHMH 1588          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: CBN77391.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 420.6 bits (1080), Expect = 7.300e-114
Identity = 228/437 (52.17%), Postives = 293/437 (67.05%), Query Frame = 0
Query:   96 DAHHGLTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGA-PALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFF---SLWKSSVGD-SRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAARPEKMFNQALIAVGVIFACLGAYAAIDD 528
            D H  +++S+  +NI+ADLCPHGMLP+A+GMA+ GGTGLA A  LL  FG +SAYT+IS+ RAC+ T  +SF G+W+  +   +AW+++  +  + FGCCIFY AF GDL +ALA  + + P +L KR V LV L + PL+PLCLMKNLSALQY+S VGV+ ILYTT FVVKR LDGTY EGG F + ID  +R   PS   + K++R+GPG ++LMNM+CVAF  HYNG+ YY EL+DRT  +YA  +G     SF VF  MM FGFRTFG AAQ LLLNNYHRT D LA+ +RLAT FSI+CGFPLMFA LKT FF   S      GD   +++   Q     E +     V L+A +  IAC  +EEDV  +IGLIGA+LG+G  YIIPA+LN  LL R+        E   N+A+I  G +F  +G    + +
Sbjct:   15 DPHGDMSVSTAILNIVADLCPHGMLPVAYGMAAVGGTGLAVAPALLASFGIISAYTMISVGRACQRTKRWSFSGLWTDLVGKKSAWVVEVAMALMTFGCCIFYLAFAGDLFSALAGTVSSLPEVLKKRAVDLVILGLCPLLPLCLMKNLSALQYTSFVGVVSILYTTLFVVKRSLDGTYSEGGEFFNTIDARFRSPVPSPWGVVKLWRVGPGLVTLMNMSCVAFMCHYNGVKYYEELEDRTEKKYAVTIGSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQN---DETLRTGCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGANRGLVSEITLNKAIILFGAVFMVMGTMVTLKE 448          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: XP_002177843.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50657.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 325.9 bits (834), Expect = 2.400e-85
Identity = 207/493 (41.99%), Postives = 285/493 (57.81%), Query Frame = 0
Query:   68 VRGGGS---SPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAI-NIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACE----------ATGEYSFRGIWSRTLQPS--TAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQAL-GAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPS---HTALEKVFRL--------GPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAAR-------PEKMFNQALIAVGVIFACLGAYAAI 526
            +RGG +   +PK     TK   A++   GH D    L  S  A+ N++ADLCPHGMLP+A+GMA+ GGTG   A  +L++FG+LS Y+L+S ARA +          A GE S   +W RT+     T +I D G  FL  GC +FYSAFIGD+  +L   + G P++L KRW  L+ LH  P++PLCL K+LSAL+YSS+ G+LGI YT  FV KR +DG+Y EGG++  L+   ++P   +   HT    +  L        G G  +LMNM CVA+  HYN + YY ELKDRT+P     +  G   +  VF  MM  GF TFG  +Q LLLNNYH + D +AT +RL T  +II G+ LMFAGLK   FSL          L +D       +    T+S  +L+AI   AC  TE ++  VIG++G+V G+ V+YI PA++N  LLA+ K+    R        E +FN+ +I  G +FA LG + ++
Sbjct:   48 IRGGAAAIPAPKGKRVLTKKHVATS--VGHDDE---LMSSPTAVANVLADLCPHGMLPIAYGMAAAGGTGPVLATAVLVVFGALSWYSLVSFARAADVVLVQSKEEHAAGE-SLSAVWERTVPNGKLTTYIPDVGCVFLTVGCLLFYSAFIGDIFGSLVSGVKGLPSVLQKRWPVLLLLHAVPILPLCLKKDLSALKYSSMTGLLGIFYTVFFVGKRLVDGSYAEGGKYFDLMATKFQPAPLANFPHTQSGVLGYLADIPSMYAGKGLFTLMNMCCVAYACHYNAVKYYMELKDRTVPTLKGVMAAGIGGTGLVFWCMMMLGFATFGKHSQALLLNNYHSSVDLMATAARLFTGIAIISGYALMFAGLKAALFSL----------LKLDQPNTTNRDLKQNTISFGILSAIAVAACFVTEHELATVIGIVGSVFGSVVIYIFPAIVNISLLAK-KNKKGNRIAALFFPGEVLFNKLMILFGAMFAVLGTWISL 523          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: GAX21242.1 (hypothetical protein FisN_23Lh190 [Fistulifera solaris])

HSP 1 Score: 312.0 bits (798), Expect = 3.600e-81
Identity = 191/481 (39.71%), Postives = 268/481 (55.72%), Query Frame = 0
Query:   71 GGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEAT--------GEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQAL-GAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALE-----KVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAAR-------PEKMFNQALIAVGVIFACLGAYAAIDDQFG 531
            GG +     AP     A T    H    H ++      N++ADLCPHGMLP+A+GMA+ GGTG   A  +L++FG LS Y+L++ ARA +AT           S   +W RT+ P T +I D G   L  GC +FYSAF+GD+  +L   L   P +L KRW  L+ LH  P++PLCL ++LS+LQYSS+ G+LGI+YT  FV KR +DG+Y  GG+F++L+     P       L      K+F+   G + LMNM CVA+  HYN + Y+ ELK+RT+      +  G   +  VF  MM  G+ TFG  +Q LLLN+YH ++D +AT +R  T  +II G+ LMFAGLK   FSL K             QKA          SV LL  I   AC  TE ++  VIG++G+V G+ V+Y+ PA++N KLL  +KD             E  FN+ ++  G++FA LG + ++ +  G
Sbjct:   33 GGFNKNVKKAPI--VKAKTIAKNHHHEAHLMSAPVAVANVLADLCPHGMLPIAYGMAAGGGTGPVLATLILLVFGFLSWYSLVTWARAADATLCREKPVVMAESLSEVWERTVGPQTKFIPDLGCVALTLGCLLFYSAFLGDIFGSLVSGLPSLPPILRKRWTVLLLLHAVPVLPLCLAEDLSSLQYSSMTGLLGIIYTVFFVGKRLVDGSYAAGGKFYNLMPNHLHPSGQGTGVLGLVSELKLFQAKRGLLVLMNMCCVAYACHYNSVKYFMELKNRTVSNLQKVMAFGLGGTALVFFCMMILGYATFGSNSQALLLNHYHGSQDVMATTARAFTGLAIISGYALMFAGLKAALFSLLKEK-------RPQQQKA---------WSVSLLTLIATAACFVTEAELATVIGIVGSVFGSVVIYMFPAIVNFKLL-NMKDKKGKNIVQPLFSGEMAFNKLMVVFGIVFAILGTWISLAEGGG 494          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: GAX18297.1 (hypothetical protein FisN_23Hh190 [Fistulifera solaris])

HSP 1 Score: 312.0 bits (798), Expect = 3.600e-81
Identity = 193/481 (40.12%), Postives = 267/481 (55.51%), Query Frame = 0
Query:   71 GGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEAT--------GEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQAL-GAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGP-----GAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAAR-------PEKMFNQALIAVGVIFACLGAYAAIDDQFG 531
            GG +     AP     A  +   H    H ++      N++ADLCPHGMLP+A+GMA+ GGTG   A  +L++FG LS Y+L++ ARA +AT           S   +W RT+ P T +I D G   L  GC +FYSAF+GD+  +L   L   P +L KRW  L+ LH  P++PLCL ++LS+LQYSS+ G+LGI+YT  FV KR +DG+Y  GG+F+SL+     P       L  V  L P     G + LMNM CVA+  HYN + Y+ ELK+RT+      +  G   +  VF  MM  G+ TFG  +Q LLLN+YH ++D +AT +R  T  +II G+ LMFAGLK   FSL K             QKA          SV LL  I   AC  TE ++  VIG++G+V G+ V+Y+ PA++N KLL  +KD             E  FN+ ++  G+IFA LG + ++ +  G
Sbjct:   33 GGFNKTVKKAPI--VKAKITANNHHHEEHLMSAPVAIANVLADLCPHGMLPIAYGMAAGGGTGPVLATLILLVFGFLSWYSLVTWARAADATLCREKPVVMAESLSEVWERTVGPQTKFIPDLGCVALTLGCLLFYSAFLGDIFGSLVSGLPSLPPILRKRWTVLLLLHAVPVLPLCLAEDLSSLQYSSMTGLLGIIYTVFFVGKRLVDGSYAAGGKFYSLMPNHLHPSGQGTGVLGLVSELKPFQAKRGLLVLMNMCCVAYACHYNSVKYFMELKNRTVSNLQKVMAFGLGGTALVFFCMMILGYATFGSNSQALLLNHYHGSQDVMATTARAFTGLAIISGYALMFAGLKAALFSLLKEK-------RPQQQKA---------WSVSLLTIIATAACFVTEAELATVIGIVGSVFGSVVIYMFPAIVNFKLL-NMKDKKGKNIVQPLFSGELAFNKLMVVFGIIFAILGTWISLAEGGG 494          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: EWM22597.1 (Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 259.2 bits (661), Expect = 2.800e-65
Identity = 155/419 (36.99%), Postives = 234/419 (55.85%), Query Frame = 0
Query:  108 INIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMS-VMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAARPEKMFNQALIAVGVIFACLGAYAAI 526
            +N+  ++   GML L  G+A+  GTG  PA  LL      SAYT + + R+ EAT   SF+  WSRT+ P+ AW++D  IT L F  CI Y+ F+GD   +L +  G PA L  R   ++A+ +  L PL L+K+LSALQYSS VG+  ++YT  F+  R  DG+Y +GG F + I    RP +P+H      +++  G   L +M   ++  H N + +Y EL+ R++ R+   V     ++  ++   M+ GF TFG A+Q L+LNNYH ++D LAT  R+ATA SII   PL+F+GL+  F S+   +V              +S P T  +S ++LL     I+  C  +DVG ++ L+G+ LG  +VY+ P  +   LL R KD+  +R E +   A I  GV+  C G + A+
Sbjct:   98 VNLAKNIIGGGMLALPAGLAAGAGTGYIPAYLLLAFSAVSSAYTFVLVGRSVEATRSRSFKEAWSRTVGPAHAWVVDYAITALAFAVCIVYACFVGDTFTSLLKGAGLPAWLSSREASILAVTITVLFPLTLLKDLSALQYSSYVGIAAVIYTVLFMAWRFWDGSYAKGGAFFAAIAPELRP-RPAHFG---PWKMSVGTAILFSMFSTSYMAHTNAVKFYNELEGRSVRRFWQVVAGAMGSATVIYLAAMTLGFETFGLASQGLVLNNYHVSQDVLATMGRIATAVSIIGAHPLLFSGLRDSFLSILPPNV--------------VSRPSTWLLSTIVLLGGATCISLLC--KDVGLLVSLVGSSLGAAIVYVFPPFMYLHLLRRRKDIHTSRGEILLLHATILFGVVSGCFGTWVAL 496          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: CBN77220.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 231.9 bits (590), Expect = 4.800e-57
Identity = 155/470 (32.98%), Postives = 243/470 (51.70%), Query Frame = 0
Query:   70 GGGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGMLPLAFGMA--SEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTK-LLARVKDMAAA-------RPEKMFNQALIAVGVIFACLGAYAAIDDQF 530
            GGG   +AAS     +  S SV                 N+  ++   GML L  G+A  S+    + PA  ++   G++SAYT + I R+C  T   S+   W+RT+   +AW+        CF  C+ ++  IGD  +ALA+  GAPAL+ KR   ++A+    L+PL L+KNL +L ++S++G  G++YT   +  R  DG+Y  GG+FH+L+     P+  +       F      + L++M   A+  H+N   +Y ELKD T+PRY+  V + FLAS +    + +FGF TFG A+   +LNNY  T D LAT +R+A A S++  +PL F GL+ G   +  +  G++R  +                +V LLA +   + + T  D+GFV    GA++G+G+VY+ PAL+  K L+ + KD A A       + E   N  ++AVGV    LG   ++ + F
Sbjct:    3 GGGEGSQAASEEGDKSGMSASV----------------FNLAKNILGAGMLSLPNGVAAFSDSRKAIVPASLIIAALGAVSAYTFVLIGRSCAETNAESYEQSWARTVGQKSAWVPAGACVATCFAGCLAFTIIIGDSFSALAKTFGAPALVAKRSNIIMAVSATVLLPLSLLKNLKSLGFTSMLGTSGLVYTAVMMAIRFFDGSYAAGGKFHALLPAAGAPVFDAKGTNPICF------LVLVSMLSTAYEAHFNAPLFYRELKDNTVPRYSKMVSISFLASVATMTAVTAFGFMTFGGASSGYILNNY-ATTDRLATVARVAVASSLVFSYPLCFVGLRDGIREMSGAKPGETRNRT--------------RWTVGLLAGVTAASLKLT--DLGFVNSFGGALIGSGIVYVFPALMFLKPLMRKFKDKAVAAAAAAGQKREMSLNAGIVAVGVAMGVLGCVISVLETF 433          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: XP_005852626.1 (hypothetical protein NGA_0541502 [Nannochloropsis gaditana CCMP526] >EKU23204.1 hypothetical protein NGA_0541502 [Nannochloropsis gaditana CCMP526] >EWM22612.1 Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 219.9 bits (559), Expect = 1.900e-53
Identity = 155/467 (33.19%), Postives = 240/467 (51.39%), Query Frame = 0
Query:   68 VRGGGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGM--LPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQAL-GAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLAR------VKDMAAARPEKMFNQALIAVGVIFACLGAYAAI 526
            +RGG +     S    PA   +      D + G ++S+   N++ ++   G+  LP   G  S     L PA+ L +  GSLSAY    IAR C      ++   W +++   TAW++ A  TF  F  C  +S  I D  ++L  A  G PALL +R   +V +    L+PLC++K+ + L   S++G+LG ++T A +  R LDG+Y  GG+FH  I    RP   S ++      L P    L++M   +F  HYN   +YTEL++R++P+    V   F    + FA +M  G+ TFG A+Q L+LNNY   +D LA   RLA   SI+ G+PL F G++ G  SL       +R  +V T   L+   V  T++V L              DVGFV+ L GA+LG+ ++YI PA++  K +A+      V +  A + E + N+ + A+GV+ A +GA  ++
Sbjct:   66 IRGGAAVTAEGSFQVPPAGTES-----GDGNKGSSVSTATFNLIKNILGAGVLSLPSGVGAFSSNPMALVPAVALTMGMGSLSAYCFTLIARVCALNKVETYGEAWEKSVGKKTAWMVPAACTFKTFCACTAFSIIIADSFSSLFGATPGFPALLAQRTNVIVWMTSLVLLPLCMLKSFAPLAPFSLLGILGTVFTGAVIALRLLDGSYAPGGQFHEAIAASLRPSLLSGSSSP---LLSPMVFVLVSMLSTSFIAHYNAPKFYTELENRSIPKLNKVVQNSFNFCTAAFAFIMGCGYLTFGGASQGLILNNY-AEQDVLAKMCRLAIGASIVFGYPLTFVGIRDGVLSLLGRKAPSTRTQTVTT---LVLLAVVSTLAVFL-------------RDVGFVVSLGGALLGSCIIYIFPAIIFIKTMAQKVATGEVVETPAVKREVLLNKGITALGVLLAIIGATVSV 507          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: CBJ49079.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 216.9 bits (551), Expect = 1.600e-52
Identity = 162/489 (33.13%), Postives = 242/489 (49.49%), Query Frame = 0
Query:   62 LDFLEHVRGGGSS--PKAASAPTKPAFASTSVAGHSD----------AHHGLTISSLAINIMADLCPHGMLPLAFGMA--SEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAARP-------EKMFNQALIAVGVIFACLGAYAAIDDQF 530
            L FLE  +G  SS    A+S   +P F         D          +  G+T+     N++ ++   G+L +  G+   S+    + P + +++  G +S Y    I R C ATG  S+   WS+T+   T+W+  +  T   F  C+ YS  IGD+ A +  A GAP +L  R   L  +    L+PLCL+K+LSAL Y+SI+GVLG +YT A +  R  D +Y EGGRF + +    RP+     A+         A+ L++M   AF  H+N   +Y ELKD+++PR+   VG  F A+  +  +M  F + TFG A++  +LNN+  T D LAT  RLA A SI+ G+PL+F G KTG      ++VG S            +E      + +LL     I    T  D+GFV+   GAVLG+ +V+I P ++   +    KD    +P       E M N  + A+GV  A LG   +I   F
Sbjct:   14 LSFLEKRQGWVSSRVRAASSQGQRPRFRIPDYLHLGDNPGQAPQAESSSSGVTVGRSIFNLIKNVVGAGILAIPGGVTAFSQSRAAVVPTVAMIVALGGMSGYCFSLIGRVCAATGASSYGDAWSKTIGEKTSWLPTSSCTAKTFFACMAYSIIIGDVFADVLAAFGAPGVLAARTNILCLVSALVLLPLCLLKDLSALSYTSIMGVLGTVYTAAVMGIRYFDNSYVEGGRFFAGLAKDARPVFSGTGAMNS------QALILVSMLSTAFVAHFNAPKFYAELKDKSVPRFNTVVGSSFAAAIGLVVIMTLFPYLTFGGASKSFILNNF-ATSDRLATSCRLAIASSIVGGYPLVFMGAKTGAL----AAVGISNP----------TENQRKVGTTLLLGFFTAIGVLLT--DLGFVVSFGGAVLGSALVFIFPTMM--WIAQSKKDAKWGKPLKGWRRAEIMGNYVISALGVALAVLGGGLSIKKSF 477          
BLAST of NO05G00800 vs. NCBI_GenBank
Match: OEU20517.1 (Aa_trans-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 204.9 bits (520), Expect = 6.300e-49
Identity = 132/421 (31.35%), Postives = 214/421 (50.83%), Query Frame = 0
Query:  109 NIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQ-EGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDM-AAARPEKMFNQALIAVGVIFACLGAYAAIDD 528
            N++ ++   G+L LA G+A   GTG+ PA+ +    G+LS +    I  ACE TGE  F+G+W +T+ P++A+++D  I  +C  C + YS  +GD+   L +  G P   + R   ++A+ +F L+PL L+K+LS L ++S++G   ILYT  F++ R  DG+Y+   G+F          ++     +  ++     ++ L +   +A+  HYN   +Y  LKD    R+   V + F+   +++   M  G+ TFG   Q  +L NYH   D L+T  RLAT FSI+ GFPL+  G +     L  S    +  L  D     L   +   ++          A  CT +DV  V+GL GA LG+ +VY+ P L+ TK +  +    + A      N AL+  G+  A LG +  I +
Sbjct:   39 NLVNNVAGAGILTLASGVAP--GTGVIPAIIICFTLGTLSGHCFSIIGDACELTGESDFKGLWMKTIGPNSAYMVDTMIAIMCLSCSVIYSGILGDVFTPLFKQAGFPDQWNGRSSNIIAITIFLLLPLSLIKDLSKLAFTSLLGFSAILYTVFFIIIRAFDGSYKLPAGKF----------LQDGLITVPSMWNFDFTSLVLASNLGLAYIAHYNAPNFYRSLKDTNSKRFRLMVNITFITLVTLYIATMMAGYATFGDICQGNILLNYH-PNDILSTFGRLATGFSILFGFPLVVCGAREAIIGLTSSLA--NVELGSDKNNFFLVAGILTFVT----------AISCTVKDVSLVVGLTGAALGSTIVYVCPPLIYTKAVTLIHGADSTASKRAQVNLALVPFGLFIAVLGCFMTIKE 434          
The following BLAST results are available for this feature:
BLAST of NO05G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28220.12.400e-21880.95pentatricopeptide repeat containing protein [Nanno... [more]
CBN77391.17.300e-11452.17conserved unknown protein [Ectocarpus siliculosus][more]
XP_002177843.12.400e-8541.99predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX21242.13.600e-8139.71hypothetical protein FisN_23Lh190 [Fistulifera sol... [more]
GAX18297.13.600e-8140.12hypothetical protein FisN_23Hh190 [Fistulifera sol... [more]
EWM22597.12.800e-6536.99Amino acid transporter, transmembrane [Nannochloro... [more]
CBN77220.14.800e-5732.98conserved unknown protein [Ectocarpus siliculosus][more]
XP_005852626.11.900e-5333.19hypothetical protein NGA_0541502 [Nannochloropsis ... [more]
CBJ49079.11.600e-5233.13conserved unknown protein [Ectocarpus siliculosus][more]
OEU20517.16.300e-4931.35Aa_trans-domain-containing protein [Fragilariopsis... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003794NSK003794Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00800.1NO05G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669724gene_2871Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g6gene2271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00800.1NO05G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00800 ID=NO05G00800|Name=NO05G00800|organism=Nannochloropsis oceanica|type=gene|length=1629bp
ATGGCGCCACACATTGGTTGCCGACAGGCCCTGCTGTTGGCCACACTGGC
ACTGGCCGTGGTTACCATTTGCGCTTCTTCAACCCCTCCTTCTTCTTCGG
CCTCCTCATCGTCCTTCCTTCTCCGACGTCGCCTGGCAACAACAAACCGT
GATTTCCAGCAAGATTGCTCCACTATATCGGCTCTTGATTTTCTTGAACA
TGTCCGCGGCGGCGGTTCTTCTCCAAAGGCCGCTAGCGCTCCCACCAAGC
CTGCTTTTGCCTCTACTTCTGTTGCTGGGCATTCGGACGCGCATCATGGC
TTGACCATCAGCTCTCTCGCCATCAACATCATGGCTGACCTCTGCCCACA
CGGCATGTTGCCACTTGCGTTTGGGATGGCTTCGGAAGGCGGCACAGGCC
TTGCCCCTGCGTTGACCCTCCTCATCATCTTTGGTTCTCTTTCGGCATAC
ACCCTCATCTCCATCGCCCGCGCCTGCGAAGCCACCGGCGAGTACTCTTT
CCGAGGCATCTGGTCGCGTACTCTCCAGCCGTCCACCGCGTGGATCATCG
ATGCTGGCATCACTTTTTTGTGCTTTGGATGTTGTATTTTCTACTCGGCC
TTCATTGGGGACTTGTCGGCGGCGCTTGCCCAAGCTCTTGGGGCGCCTGC
CTTACTCCACAAGAGGTGGGTCTGTCTAGTTGCGCTGCACGTCTTCCCCC
TAATGCCTTTATGCTTGATGAAGAATTTGTCTGCTCTTCAATACTCCTCG
ATCGTCGGGGTGCTTGGCATTCTTTACACGACAGCCTTTGTGGTGAAACG
GCAGCTTGACGGGACGTACCAAGAAGGTGGTCGATTCCACTCCCTCATCG
ACGTGGTGTACCGCCCCATTAAACCCTCGCATACGGCCCTGGAGAAAGTT
TTCCGTCTGGGACCCGGTGCCATCTCGTTGATGAACATGGCATGCGTGGC
CTTCACGACACATTACAACGGTATTGCCTACTACACCGAACTCAAGGATC
GGACCCTTCCACGCTACGCCGCTGCTGTCGGCCTGGGCTTCCTTGCCTCC
TTCTCCGTCTTCGCCCTCATGATGAGCTTTGGATTTCGCACCTTTGGTCA
TGCTGCCCAACCCCTCCTCCTTAACAATTATCATCGAACCAAGGACGCGC
TGGCGACGGGCTCGCGGCTCGCGACGGCCTTTTCTATCATATGCGGTTTC
CCTCTCATGTTCGCCGGCCTCAAGACCGGTTTCTTCTCCCTCTGGAAAAG
TTCTGTCGGAGACTCTCGTCGCTTGTCAGTCGACACACAAAAGGCGTTGC
TATCCGAACCAGTCACCATGACGATGTCCGTTATGTTGCTGGCTGCCATC
TGTGGCATCGCTTGTCAATGCACGGAAGAAGACGTGGGTTTCGTGATTGG
TCTTATCGGCGCTGTCCTAGGCACAGGTGTCGTGTACATCATCCCTGCCC
TGCTTAATACAAAGCTCCTCGCACGCGTAAAGGATATGGCGGCCGCCAGA
CCAGAGAAAATGTTTAACCAGGCCTTGATTGCTGTGGGCGTTATTTTTGC
GTGTCTGGGGGCGTACGCGGCCATTGATGATCAGTTCGGTATATTTAGCG
GGACGGGGCCGAAGATGCATGTGCATTAG
back to top

protein sequence of NO05G00800.1

>NO05G00800.1-protein ID=NO05G00800.1-protein|Name=NO05G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MAPHIGCRQALLLATLALAVVTICASSTPPSSSASSSSFLLRRRLATTNR
DFQQDCSTISALDFLEHVRGGGSSPKAASAPTKPAFASTSVAGHSDAHHG
LTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAY
TLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSA
FIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSS
IVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKV
FRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLAS
FSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGF
PLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAI
CGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAAR
PEKMFNQALIAVGVIFACLGAYAAIDDQFGIFSGTGPKMHVH*
back to top
Synonyms
Publications