NO05G00800.1, NO05G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00800.1
Unique NameNO05G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1629
Alignment locationchr5:253856..255484 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:253856..255484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00800.1 vs.
Match: EWM28220.1 (pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 771.9 bits (1992), Expect = 1.300e-219
Identity = 402/533 (75.42%), Postives = 450/533 (84.43%), Query Frame = 0 
Query:   10 ALLLATLALAVVTICASSTPPSSSASSSSFLLRRRLATTNRDFQQDCSTISALDFLEHVRGGGSSPKAASAPTKPAFASTSVAGHSDAHHGLTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAYTLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSSIVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKVFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLASFSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGFPLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAICGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAARPEKMFNQALIAVGVIFACLGAYAAIDDQFGIFSGTGPKMHVH 543
            ALL + +A + +   ++S+  S+   SS+    R +  TN + +    + S+  FL+ VRGG +SPKA+S P K    S   AG ++AHHGL+++SLAINIMADLCPHGMLPLAFGMASEGGTGL PAL+LL++FGSLSAYTLISIARACEATGEYSFRGIWSRTL PSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPA+LHKRW+CLVALH+FPL PLCLMKNLSALQYSSIVGV GILYTTAFVVKRQ DG+Y   G FH+LID VYRP  PS++A EK+FRLGPGAISLMNMACVAFTTHYNGIAYYTELKDR L RY+ AVGLGFLASFSVFALMM FGF TFG AAQPLLLNNYHRT+DALATGSRLATAFSI+CGFPLMFAGLKTGFFSLW S+V  +RRLS   + AL S+ V  T+S +LLAAICGIAC CTEEDVGFVIG+IGAVLGT VVYIIPALLNTKLLARVKD   A+PEK FNQ LI +GV+FA LG Y AIDDQFGIFSG GPK+H+H
Sbjct: 1058 ALLFSGIASSHLAQVSTSSSSSTMEMSSAASKPRSILNTNTNMRHAGMSSSSCRFLKRVRGGAASPKASSIPIKTT--SHVTAGTTEAHHGLSVTSLAINIMADLCPHGMLPLAFGMASEGGTGLVPALSLLVLFGSLSAYTLISIARACEATGEYSFRGIWSRTLHPSTAWIIDAGITFLCFGCCIFYSAFIGDLSAALAQALGAPAVLHKRWLCLVALHIFPLWPLCLMKNLSALQYSSIVGVFGILYTTAFVVKRQCDGSYGPSGHFHALIDAVYRPQTPSYSAFEKLFRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRNLSRYSGAVGLGFLASFSVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFSLWHSNVESARRLSPRLRVALKSDTVIATVSSLLLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTGVAKPEKRFNQGLIVIGVVFALLGTYMAIDDQFGIFSGRGPKVHMH 1588
The following BLAST results are available for this feature:
BLAST of NO05G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28220.11.300e-21975.42pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00800NO05G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00800.1NO05G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00800.1.cds1NO05G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00800.1 ID=NO05G00800.1|Name=NO05G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp
ATGGCGCCACACATTGGTTGCCGACAGGCCCTGCTGTTGGCCACACTGGC
ACTGGCCGTGGTTACCATTTGCGCTTCTTCAACCCCTCCTTCTTCTTCGG
CCTCCTCATCGTCCTTCCTTCTCCGACGTCGCCTGGCAACAACAAACCGT
GATTTCCAGCAAGATTGCTCCACTATATCGGCTCTTGATTTTCTTGAACA
TGTCCGCGGCGGCGGTTCTTCTCCAAAGGCCGCTAGCGCTCCCACCAAGC
CTGCTTTTGCCTCTACTTCTGTTGCTGGGCATTCGGACGCGCATCATGGC
TTGACCATCAGCTCTCTCGCCATCAACATCATGGCTGACCTCTGCCCACA
CGGCATGTTGCCACTTGCGTTTGGGATGGCTTCGGAAGGCGGCACAGGCC
TTGCCCCTGCGTTGACCCTCCTCATCATCTTTGGTTCTCTTTCGGCATAC
ACCCTCATCTCCATCGCCCGCGCCTGCGAAGCCACCGGCGAGTACTCTTT
CCGAGGCATCTGGTCGCGTACTCTCCAGCCGTCCACCGCGTGGATCATCG
ATGCTGGCATCACTTTTTTGTGCTTTGGATGTTGTATTTTCTACTCGGCC
TTCATTGGGGACTTGTCGGCGGCGCTTGCCCAAGCTCTTGGGGCGCCTGC
CTTACTCCACAAGAGGTGGGTCTGTCTAGTTGCGCTGCACGTCTTCCCCC
TAATGCCTTTATGCTTGATGAAGAATTTGTCTGCTCTTCAATACTCCTCG
ATCGTCGGGGTGCTTGGCATTCTTTACACGACAGCCTTTGTGGTGAAACG
GCAGCTTGACGGGACGTACCAAGAAGGTGGTCGATTCCACTCCCTCATCG
ACGTGGTGTACCGCCCCATTAAACCCTCGCATACGGCCCTGGAGAAAGTT
TTCCGTCTGGGACCCGGTGCCATCTCGTTGATGAACATGGCATGCGTGGC
CTTCACGACACATTACAACGGTATTGCCTACTACACCGAACTCAAGGATC
GGACCCTTCCACGCTACGCCGCTGCTGTCGGCCTGGGCTTCCTTGCCTCC
TTCTCCGTCTTCGCCCTCATGATGAGCTTTGGATTTCGCACCTTTGGTCA
TGCTGCCCAACCCCTCCTCCTTAACAATTATCATCGAACCAAGGACGCGC
TGGCGACGGGCTCGCGGCTCGCGACGGCCTTTTCTATCATATGCGGTTTC
CCTCTCATGTTCGCCGGCCTCAAGACCGGTTTCTTCTCCCTCTGGAAAAG
TTCTGTCGGAGACTCTCGTCGCTTGTCAGTCGACACACAAAAGGCGTTGC
TATCCGAACCAGTCACCATGACGATGTCCGTTATGTTGCTGGCTGCCATC
TGTGGCATCGCTTGTCAATGCACGGAAGAAGACGTGGGTTTCGTGATTGG
TCTTATCGGCGCTGTCCTAGGCACAGGTGTCGTGTACATCATCCCTGCCC
TGCTTAATACAAAGCTCCTCGCACGCGTAAAGGATATGGCGGCCGCCAGA
CCAGAGAAAATGTTTAACCAGGCCTTGATTGCTGTGGGCGTTATTTTTGC
GTGTCTGGGGGCGTACGCGGCCATTGATGATCAGTTCGGTATATTTAGCG
GGACGGGGCCGAAGATGCATGTGCATTAG
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protein sequence of NO05G00800.1

>NO05G00800.1-protein ID=NO05G00800.1-protein|Name=NO05G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MAPHIGCRQALLLATLALAVVTICASSTPPSSSASSSSFLLRRRLATTNR
DFQQDCSTISALDFLEHVRGGGSSPKAASAPTKPAFASTSVAGHSDAHHG
LTISSLAINIMADLCPHGMLPLAFGMASEGGTGLAPALTLLIIFGSLSAY
TLISIARACEATGEYSFRGIWSRTLQPSTAWIIDAGITFLCFGCCIFYSA
FIGDLSAALAQALGAPALLHKRWVCLVALHVFPLMPLCLMKNLSALQYSS
IVGVLGILYTTAFVVKRQLDGTYQEGGRFHSLIDVVYRPIKPSHTALEKV
FRLGPGAISLMNMACVAFTTHYNGIAYYTELKDRTLPRYAAAVGLGFLAS
FSVFALMMSFGFRTFGHAAQPLLLNNYHRTKDALATGSRLATAFSIICGF
PLMFAGLKTGFFSLWKSSVGDSRRLSVDTQKALLSEPVTMTMSVMLLAAI
CGIACQCTEEDVGFVIGLIGAVLGTGVVYIIPALLNTKLLARVKDMAAAR
PEKMFNQALIAVGVIFACLGAYAAIDDQFGIFSGTGPKMHVH*
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mRNA from alignment at chr5:253856..255484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00800.1 ID=NO05G00800.1|Name=NO05G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at chr5:253856..255484- (Nannochloropsis oceanica)
ATGGCGCCACACATTGGTTGCCGACAGGCCCTGCTGTTGGCCACACTGGC
ACTGGCCGTGGTTACCATTTGCGCTTCTTCAACCCCTCCTTCTTCTTCGG
CCTCCTCATCGTCCTTCCTTCTCCGACGTCGCCTGGCAACAACAAACCGT
GATTTCCAGCAAGATTGCTCCACTATATCGGCTCTTGATTTTCTTGAACA
TGTCCGCGGCGGCGGTTCTTCTCCAAAGGCCGCTAGCGCTCCCACCAAGC
CTGCTTTTGCCTCTACTTCTGTTGCTGGGCATTCGGACGCGCATCATGGC
TTGACCATCAGCTCTCTCGCCATCAACATCATGGCTGACCTCTGCCCACA
CGGCATGTTGCCACTTGCGTTTGGGATGGCTTCGGAAGGCGGCACAGGCC
TTGCCCCTGCGTTGACCCTCCTCATCATCTTTGGTTCTCTTTCGGCATAC
ACCCTCATCTCCATCGCCCGCGCCTGCGAAGCCACCGGCGAGTACTCTTT
CCGAGGCATCTGGTCGCGTACTCTCCAGCCGTCCACCGCGTGGATCATCG
ATGCTGGCATCACTTTTTTGTGCTTTGGATGTTGTATTTTCTACTCGGCC
TTCATTGGGGACTTGTCGGCGGCGCTTGCCCAAGCTCTTGGGGCGCCTGC
CTTACTCCACAAGAGGTGGGTCTGTCTAGTTGCGCTGCACGTCTTCCCCC
TAATGCCTTTATGCTTGATGAAGAATTTGTCTGCTCTTCAATACTCCTCG
ATCGTCGGGGTGCTTGGCATTCTTTACACGACAGCCTTTGTGGTGAAACG
GCAGCTTGACGGGACGTACCAAGAAGGTGGTCGATTCCACTCCCTCATCG
ACGTGGTGTACCGCCCCATTAAACCCTCGCATACGGCCCTGGAGAAAGTT
TTCCGTCTGGGACCCGGTGCCATCTCGTTGATGAACATGGCATGCGTGGC
CTTCACGACACATTACAACGGTATTGCCTACTACACCGAACTCAAGGATC
GGACCCTTCCACGCTACGCCGCTGCTGTCGGCCTGGGCTTCCTTGCCTCC
TTCTCCGTCTTCGCCCTCATGATGAGCTTTGGATTTCGCACCTTTGGTCA
TGCTGCCCAACCCCTCCTCCTTAACAATTATCATCGAACCAAGGACGCGC
TGGCGACGGGCTCGCGGCTCGCGACGGCCTTTTCTATCATATGCGGTTTC
CCTCTCATGTTCGCCGGCCTCAAGACCGGTTTCTTCTCCCTCTGGAAAAG
TTCTGTCGGAGACTCTCGTCGCTTGTCAGTCGACACACAAAAGGCGTTGC
TATCCGAACCAGTCACCATGACGATGTCCGTTATGTTGCTGGCTGCCATC
TGTGGCATCGCTTGTCAATGCACGGAAGAAGACGTGGGTTTCGTGATTGG
TCTTATCGGCGCTGTCCTAGGCACAGGTGTCGTGTACATCATCCCTGCCC
TGCTTAATACAAAGCTCCTCGCACGCGTAAAGGATATGGCGGCCGCCAGA
CCAGAGAAAATGTTTAACCAGGCCTTGATTGCTGTGGGCGTTATTTTTGC
GTGTCTGGGGGCGTACGCGGCCATTGATGATCAGTTCGGTATATTTAGCG
GGACGGGGCCGAAGATGCATGTGCATTAG
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Coding sequence (CDS) from alignment at chr5:253856..255484-

>NO05G00800.1 ID=NO05G00800.1|Name=NO05G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr5:253856..255484- (Nannochloropsis oceanica)
ATGGCGCCACACATTGGTTGCCGACAGGCCCTGCTGTTGGCCACACTGGC
ACTGGCCGTGGTTACCATTTGCGCTTCTTCAACCCCTCCTTCTTCTTCGG
CCTCCTCATCGTCCTTCCTTCTCCGACGTCGCCTGGCAACAACAAACCGT
GATTTCCAGCAAGATTGCTCCACTATATCGGCTCTTGATTTTCTTGAACA
TGTCCGCGGCGGCGGTTCTTCTCCAAAGGCCGCTAGCGCTCCCACCAAGC
CTGCTTTTGCCTCTACTTCTGTTGCTGGGCATTCGGACGCGCATCATGGC
TTGACCATCAGCTCTCTCGCCATCAACATCATGGCTGACCTCTGCCCACA
CGGCATGTTGCCACTTGCGTTTGGGATGGCTTCGGAAGGCGGCACAGGCC
TTGCCCCTGCGTTGACCCTCCTCATCATCTTTGGTTCTCTTTCGGCATAC
ACCCTCATCTCCATCGCCCGCGCCTGCGAAGCCACCGGCGAGTACTCTTT
CCGAGGCATCTGGTCGCGTACTCTCCAGCCGTCCACCGCGTGGATCATCG
ATGCTGGCATCACTTTTTTGTGCTTTGGATGTTGTATTTTCTACTCGGCC
TTCATTGGGGACTTGTCGGCGGCGCTTGCCCAAGCTCTTGGGGCGCCTGC
CTTACTCCACAAGAGGTGGGTCTGTCTAGTTGCGCTGCACGTCTTCCCCC
TAATGCCTTTATGCTTGATGAAGAATTTGTCTGCTCTTCAATACTCCTCG
ATCGTCGGGGTGCTTGGCATTCTTTACACGACAGCCTTTGTGGTGAAACG
GCAGCTTGACGGGACGTACCAAGAAGGTGGTCGATTCCACTCCCTCATCG
ACGTGGTGTACCGCCCCATTAAACCCTCGCATACGGCCCTGGAGAAAGTT
TTCCGTCTGGGACCCGGTGCCATCTCGTTGATGAACATGGCATGCGTGGC
CTTCACGACACATTACAACGGTATTGCCTACTACACCGAACTCAAGGATC
GGACCCTTCCACGCTACGCCGCTGCTGTCGGCCTGGGCTTCCTTGCCTCC
TTCTCCGTCTTCGCCCTCATGATGAGCTTTGGATTTCGCACCTTTGGTCA
TGCTGCCCAACCCCTCCTCCTTAACAATTATCATCGAACCAAGGACGCGC
TGGCGACGGGCTCGCGGCTCGCGACGGCCTTTTCTATCATATGCGGTTTC
CCTCTCATGTTCGCCGGCCTCAAGACCGGTTTCTTCTCCCTCTGGAAAAG
TTCTGTCGGAGACTCTCGTCGCTTGTCAGTCGACACACAAAAGGCGTTGC
TATCCGAACCAGTCACCATGACGATGTCCGTTATGTTGCTGGCTGCCATC
TGTGGCATCGCTTGTCAATGCACGGAAGAAGACGTGGGTTTCGTGATTGG
TCTTATCGGCGCTGTCCTAGGCACAGGTGTCGTGTACATCATCCCTGCCC
TGCTTAATACAAAGCTCCTCGCACGCGTAAAGGATATGGCGGCCGCCAGA
CCAGAGAAAATGTTTAACCAGGCCTTGATTGCTGTGGGCGTTATTTTTGC
GTGTCTGGGGGCGTACGCGGCCATTGATGATCAGTTCGGTATATTTAGCG
GGACGGGGCCGAAGATGCATGTGCATTAG
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Synonyms
Publications