NO05G00660, NO05G00660 (gene) Nannochloropsis oceanica

Overview
NameNO05G00660
Unique NameNO05G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr5:219759..221353 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:219759..221353 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00660 vs. NCBI_GenBank
Match: EWM28317.1 (hypothetical protein Naga_100348g5 [Nannochloropsis gaditana])

HSP 1 Score: 227.6 bits (579), Expect = 4.200e-56
Identity = 124/214 (57.94%), Postives = 153/214 (71.50%), Query Frame = 0 
Query:   52 TRLAVFSPQNQNDDLESKLTPSFSTFLR-LTSTVFIGGAYFSSPVVTNA--VERV----VSTKTLIS--FPSSTVLVADKTVMESTCLGFGCGSYNGPDYGGAPKLETGEANVDMPAFLKLIDEKKIERVELLEGGNVAYAYI-----EKE---EGAATTTERVRIGEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDLSGAAKMTRTVPRF 249
            T++++ +PQ      E K    +   LR + S  F GG Y  SP + +A  VE V    V+T+   S  + +  V+ A++TV ESTCLGFGCGSYNGPDYGGAPKLETGE N+DMP+FLKL++EK+IE+VELLEGGNVAYAY+     +KE   EG     ERVRIGEGFP+ENGKTWSSPLW+VRILKDKQIPYTLGFD SG+ K+TR +  F
Sbjct:   35 TKVSIPAPQGARK--EGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGF 246
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BLAST of NO05G00660 vs. NCBI_GenBank
Match: CBJ25472.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21
Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = 0 
Query:   88 GAYFSSPVVTNAVERVVSTKTLI----SFPSSTV--LVADKTVMESTCLGFGCGSYNGPDYGGAPKLETGEANVDMPAFLKLIDEKKIERVELLEGGNVAYAYIEKEEGAATTTERVRIGEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDLSGAAKMTRTVPR 248
            G    S +   AV   V+T  +I    S P++    L        S C+GFGCG + G DY GAP   T E ++   +FL+ +D+  + +V+ L GG+ AYA+++ +  AA    R+R+GEG+P E G +WSSPLWVVR L D+ +PY   ++L G  + T+TV +
Sbjct:    7 GTPLRSRIERAAVAAAVATSVVILSTASVPAALAEELPPGTNPFTSICMGFGCGEFQGLDYPGAP-APTDEDSITFKSFLQSLDKGLVTKVDFLAGGDKAYAFVKPD--AAGEATRIRVGEGYPDEQGNSWSSPLWVVRALNDRNVPYHFEYNL-GKGRATQTVAK 168
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BLAST of NO05G00660 vs. NCBI_GenBank
Match: KOO33283.1 (trifunctional enzyme subunit mitochondrial-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-15
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 0 
Query:  110 ISFPSSTVLVADKTVMESTCLGFGCGSYNGPDYGGAPKLETGEANVDMPAFLKLIDEKKIERVELLEG-GNVAYAYIEKEEGAATTTERVRIGEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDL 236
            ++ PS    +++   + +TCLGFGC  Y  PD+ G    +  E ++  P FLK I +KK+E V      GN AYA I  +         VRIG+G+P+E   +WSSP+WVVRIL+++ +PY   F+L
Sbjct:   42 VARPSHADQLSEGGALGATCLGFGCNPYGRPDFNGLE--DAPENSMPYPDFLKAIKDKKVEGVVFQPPMGNEAYAIIGGKS--------VRIGKGWPVEVSNSWSSPVWVVRILENEGVPYAWNFNL 158
The following BLAST results are available for this feature:
BLAST of NO05G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28317.14.200e-5657.94hypothetical protein Naga_100348g5 [Nannochloropsi... [more]
CBJ25472.11.100e-2137.95conserved unknown protein [Ectocarpus siliculosus][more]
KOO33283.13.600e-1539.37trifunctional enzyme subunit mitochondrial-like pr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00660.1NO05G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526664gene_2859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100348g5gene2259Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00660.1NO05G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00660 ID=NO05G00660|Name=NO05G00660|organism=Nannochloropsis oceanica|type=gene|length=1595bp
GAGGGCAAAGCTCGGCCTGCCTGTGCATGCGTTGCGAAGGGAATGTGAGG
CATCTGATTTATTAATGCGCAATAGATGCTCCCGCGCCTCCACACTTGCC
TTGGAATAGCAAGTGGTCGAGCTCCTTGTTGCGGAGATGTTTCTTGAGTT
TTAAGGTGTGTATGGAGAGCGGGAGTGGTGGGTATCGGTTGTGGTGGCAT
TCCCTCGCCGCTATATCATAAAATGGCCCTCTCCTGCAACTATTGTATAA
CGCCTCAGTTGCAATGTGCATCTGCATTTTTTTTTTGCCTAAACCAGCAC
CCTGGCCTGTAAAAATATCTGAACGATTTCTCAAAGCTAGAGGCAAGTTT
GATTCTCACGATCCCGATGCTTATTCCTACTCCCAACTCCCATGCACAGT
CGGGCGCAGCAACAATGTACGCCGCCCTCCTTCTCTTGGCCATGGCCACC
ACAACTACCACCATCACATACGCTTTCACCGTCACGCCACCACCACATGC
GGTAGCCCGACCCATCATCACCCGGCTGGCAGTGTTTTCCCCTCAAAACC
AGAATGACGACCTCGAAAGCAAGCTCACCCCCTCATTCAGCACGTTCCTG
CGCCTGACCTCCACAGTCTTCATTGGCGGGGCCTACTTCTCCTCGCCCGT
CGTGACTAATGCCGTTGAAAGGGTCGTAAGCACTAAAACTCTAATATCCT
TTCCCTCCTCTACCGTACTCGTGGCCGACAAAACCGTGATGGAAAGCACG
TGCCTTGGGTTTGGCTGTGGGAGTTACAATGGCCCGGACTACGGAGGAGC
TCCTAAATTGGAAACGGGTGAAGCTAATGTTGACATGCCTGCTTTTTTGA
AGTTAATTGATGAGAAAAAGATTGAAAGGGTGGAGTTGTTGGAAGGTGGT
AATGTGGCGTACGCGTATATTGAGAAGGAAGAAGGGGCGGCGACGACGAC
GGAAAGGGTACGGATTGGCGAGGGGTTCCCGATTGAAAATGGGAAGACGT
GGTCGAGTCCGTTGTGGGTGGTTAGGATATTAAAGGACAAGCAAATTCCT
TATACGCTCGGCTTTGATTTGAGTGGGGCGGCGAAGATGACGAGAACGGT
CCCGCGTTTCTTTGATTGAGAAGAGAGGGGACTAGGAGTTTGAAATGGAG
GAAATGAAGTGCGGCAGAGGGAAATGTTTGTCATGAAATACTGAAGCCGG
TTTTAAGATTGATGGAGTGATTGTGATTACTTGAAGAGGGGCAGGTAGAT
GAGAAGCGAGCGGATCGTTGTTTCCCTCTACTTTTACTCTTACGGTTAGG
AGAGGATTAATGAGTGGGGAGGAGAAGGAAGAAGAGTAGGATGAATATGG
CCTCAAGTGAGGTGGCAATGCAATAACTTACTTCAGGAAAGTGGCAAAAT
TCACAAAGTACTGATAAGAACACTTTCGAAAGGGAGGCATGCTACGCGCC
ATGTTTTCCCTGTTTCCCCCCTGCTGTTTTTTGCGCAGGTCGTTTGGTGT
GTGTGGGTGCTGGTGTTATCCTGGATAAGATGTGTGCGAGCATGGCCAAC
GTGCTGCGCTGCAGGCGGTATTGCGAGTCCCTGTCTTGATGAACA
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protein sequence of NO05G00660.1

>NO05G00660.1-protein ID=NO05G00660.1-protein|Name=NO05G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MLIPTPNSHAQSGAATMYAALLLLAMATTTTTITYAFTVTPPPHAVARPI
ITRLAVFSPQNQNDDLESKLTPSFSTFLRLTSTVFIGGAYFSSPVVTNAV
ERVVSTKTLISFPSSTVLVADKTVMESTCLGFGCGSYNGPDYGGAPKLET
GEANVDMPAFLKLIDEKKIERVELLEGGNVAYAYIEKEEGAATTTERVRI
GEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDLSGAAKMTRTVPRFFD
*
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Synonyms
Publications