NO05G00660.1, NO05G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00660.1
Unique NameNO05G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1595
Alignment locationchr5:219759..221353 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:219759..221353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00660.1 vs.
Match: EWM28317.1 (hypothetical protein Naga_100348g5 [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 5.500e-56
Identity = 124/214 (57.94%), Postives = 153/214 (71.50%), Query Frame = 0 
Query:   52 TRLAVFSPQNQNDDLESKLTPSFSTFLR-LTSTVFIGGAYFSSPVVTNA--VERV----VSTKTLIS--FPSSTVLVADKTVMESTCLGFGCGSYNGPDYGGAPKLETGEANVDMPAFLKLIDEKKIERVELLEGGNVAYAYI-----EKE---EGAATTTERVRIGEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDLSGAAKMTRTVPRF 249
            T++++ +PQ      E K    +   LR + S  F GG Y  SP + +A  VE V    V+T+   S  + +  V+ A++TV ESTCLGFGCGSYNGPDYGGAPKLETGE N+DMP+FLKL++EK+IE+VELLEGGNVAYAY+     +KE   EG     ERVRIGEGFP+ENGKTWSSPLW+VRILKDKQIPYTLGFD SG+ K+TR +  F
Sbjct:   35 TKVSIPAPQGARK--EGKQASLWQANLRHVASAAFGGGVYLLSPSIMHAEVVETVSSTTVNTRAAASALYSAPMVVAAEQTVWESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFSGSDKVTRALSGF 246
The following BLAST results are available for this feature:
BLAST of NO05G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28317.15.500e-5657.94hypothetical protein Naga_100348g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00660NO05G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00660.1NO05G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00660.1.cds1NO05G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00660.1 ID=NO05G00660.1|Name=NO05G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp
GAGGGCAAAGCTCGGCCTGCCTGTGCATGCGTTGCGAAGGGAATGTGAGG
CATCTGATTTATTAATGCGCAATAGATGCTCCCGCGCCTCCACACTTGCC
TTGGAATAGCAAGTGGTCGAGCTCCTTGTTGCGGAGATGTTTCTTGAGTT
TTAAGGTGTGTATGGAGAGCGGGAGTGGTGGGTATCGGTTGTGGTGGCAT
TCCCTCGCCGCTATATCATAAAATGGCCCTCTCCTGCAACTATTGTATAA
CGCCTCAGTTGCAATGTGCATCTGCATTTTTTTTTTGCCTAAACCAGCAC
CCTGGCCTGTAAAAATATCTGAACGATTTCTCAAAGCTAGAGGCAAGTTT
GATTCTCACGATCCCGATGCTTATTCCTACTCCCAACTCCCATGCACAGT
CGGGCGCAGCAACAATGTACGCCGCCCTCCTTCTCTTGGCCATGGCCACC
ACAACTACCACCATCACATACGCTTTCACCGTCACGCCACCACCACATGC
GGTAGCCCGACCCATCATCACCCGGCTGGCAGTGTTTTCCCCTCAAAACC
AGAATGACGACCTCGAAAGCAAGCTCACCCCCTCATTCAGCACGTTCCTG
CGCCTGACCTCCACAGTCTTCATTGGCGGGGCCTACTTCTCCTCGCCCGT
CGTGACTAATGCCGTTGAAAGGGTCGTAAGCACTAAAACTCTAATATCCT
TTCCCTCCTCTACCGTACTCGTGGCCGACAAAACCGTGATGGAAAGCACG
TGCCTTGGGTTTGGCTGTGGGAGTTACAATGGCCCGGACTACGGAGGAGC
TCCTAAATTGGAAACGGGTGAAGCTAATGTTGACATGCCTGCTTTTTTGA
AGTTAATTGATGAGAAAAAGATTGAAAGGGTGGAGTTGTTGGAAGGTGGT
AATGTGGCGTACGCGTATATTGAGAAGGAAGAAGGGGCGGCGACGACGAC
GGAAAGGGTACGGATTGGCGAGGGGTTCCCGATTGAAAATGGGAAGACGT
GGTCGAGTCCGTTGTGGGTGGTTAGGATATTAAAGGACAAGCAAATTCCT
TATACGCTCGGCTTTGATTTGAGTGGGGCGGCGAAGATGACGAGAACGGT
CCCGCGTTTCTTTGATTGAGAAGAGAGGGGACTAGGAGTTTGAAATGGAG
GAAATGAAGTGCGGCAGAGGGAAATGTTTGTCATGAAATACTGAAGCCGG
TTTTAAGATTGATGGAGTGATTGTGATTACTTGAAGAGGGGCAGGTAGAT
GAGAAGCGAGCGGATCGTTGTTTCCCTCTACTTTTACTCTTACGGTTAGG
AGAGGATTAATGAGTGGGGAGGAGAAGGAAGAAGAGTAGGATGAATATGG
CCTCAAGTGAGGTGGCAATGCAATAACTTACTTCAGGAAAGTGGCAAAAT
TCACAAAGTACTGATAAGAACACTTTCGAAAGGGAGGCATGCTACGCGCC
ATGTTTTCCCTGTTTCCCCCCTGCTGTTTTTTGCGCAGGTCGTTTGGTGT
GTGTGGGTGCTGGTGTTATCCTGGATAAGATGTGTGCGAGCATGGCCAAC
GTGCTGCGCTGCAGGCGGTATTGCGAGTCCCTGTCTTGATGAACA
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protein sequence of NO05G00660.1

>NO05G00660.1-protein ID=NO05G00660.1-protein|Name=NO05G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MLIPTPNSHAQSGAATMYAALLLLAMATTTTTITYAFTVTPPPHAVARPI
ITRLAVFSPQNQNDDLESKLTPSFSTFLRLTSTVFIGGAYFSSPVVTNAV
ERVVSTKTLISFPSSTVLVADKTVMESTCLGFGCGSYNGPDYGGAPKLET
GEANVDMPAFLKLIDEKKIERVELLEGGNVAYAYIEKEEGAATTTERVRI
GEGFPIENGKTWSSPLWVVRILKDKQIPYTLGFDLSGAAKMTRTVPRFFD
*
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mRNA from alignment at chr5:219759..221353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00660.1 ID=NO05G00660.1|Name=NO05G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at chr5:219759..221353- (Nannochloropsis oceanica)
GAGGGCAAAGCTCGGCCTGCCTGTGCATGCGTTGCGAAGGGAATGTGAGG
CATCTGATTTATTAATGCGCAATAGATGCTCCCGCGCCTCCACACTTGCC
TTGGAATAGCAAGTGGTCGAGCTCCTTGTTGCGGAGATGTTTCTTGAGTT
TTAAGGTGTGTATGGAGAGCGGGAGTGGTGGGTATCGGTTGTGGTGGCAT
TCCCTCGCCGCTATATCATAAAATGGCCCTCTCCTGCAACTATTGTATAA
CGCCTCAGTTGCAATGTGCATCTGCATTTTTTTTTTGCCTAAACCAGCAC
CCTGGCCTGTAAAAATATCTGAACGATTTCTCAAAGCTAGAGGCAAGTTT
GATTCTCACGATCCCGATGCTTATTCCTACTCCCAACTCCCATGCACAGT
CGGGCGCAGCAACAATGTACGCCGCCCTCCTTCTCTTGGCCATGGCCACC
ACAACTACCACCATCACATACGCTTTCACCGTCACGCCACCACCACATGC
GGTAGCCCGACCCATCATCACCCGGCTGGCAGTGTTTTCCCCTCAAAACC
AGAATGACGACCTCGAAAGCAAGCTCACCCCCTCATTCAGCACGTTCCTG
CGCCTGACCTCCACAGTCTTCATTGGCGGGGCCTACTTCTCCTCGCCCGT
CGTGACTAATGCCGTTGAAAGGGTCGTAAGCACTAAAACTCTAATATCCT
TTCCCTCCTCTACCGTACTCGTGGCCGACAAAACCGTGATGGAAAGCACG
TGCCTTGGGTTTGGCTGTGGGAGTTACAATGGCCCGGACTACGGAGGAGC
TCCTAAATTGGAAACGGGTGAAGCTAATGTTGACATGCCTGCTTTTTTGA
AGTTAATTGATGAGAAAAAGATTGAAAGGGTGGAGTTGTTGGAAGGTGGT
AATGTGGCGTACGCGTATATTGAGAAGGAAGAAGGGGCGGCGACGACGAC
GGAAAGGGTACGGATTGGCGAGGGGTTCCCGATTGAAAATGGGAAGACGT
GGTCGAGTCCGTTGTGGGTGGTTAGGATATTAAAGGACAAGCAAATTCCT
TATACGCTCGGCTTTGATTTGAGTGGGGCGGCGAAGATGACGAGAACGGT
CCCGCGTTTCTTTGATTGAGAAGAGAGGGGACTAGGAGTTTGAAATGGAG
GAAATGAAGTGCGGCAGAGGGAAATGTTTGTCATGAAATACTGAAGCCGG
TTTTAAGATTGATGGAGTGATTGTGATTACTTGAAGAGGGGCAGGTAGAT
GAGAAGCGAGCGGATCGTTGTTTCCCTCTACTTTTACTCTTACGGTTAGG
AGAGGATTAATGAGTGGGGAGGAGAAGGAAGAAGAGTAGGATGAATATGG
CCTCAAGTGAGGTGGCAATGCAATAACTTACTTCAGGAAAGTGGCAAAAT
TCACAAAGTACTGATAAGAACACTTTCGAAAGGGAGGCATGCTACGCGCC
ATGTTTTCCCTGTTTCCCCCCTGCTGTTTTTTGCGCAGGTCGTTTGGTGT
GTGTGGGTGCTGGTGTTATCCTGGATAAGATGTGTGCGAGCATGGCCAAC
GTGCTGCGCTGCAGGCGGTATTGCGAGTCCCTGTCTTGATGAACA
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Coding sequence (CDS) from alignment at chr5:219759..221353-

>NO05G00660.1 ID=NO05G00660.1|Name=NO05G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr5:219759..221353- (Nannochloropsis oceanica)
ATGCTTATTCCTACTCCCAACTCCCATGCACAGTCGGGCGCAGCAACAAT
GTACGCCGCCCTCCTTCTCTTGGCCATGGCCACCACAACTACCACCATCA
CATACGCTTTCACCGTCACGCCACCACCACATGCGGTAGCCCGACCCATC
ATCACCCGGCTGGCAGTGTTTTCCCCTCAAAACCAGAATGACGACCTCGA
AAGCAAGCTCACCCCCTCATTCAGCACGTTCCTGCGCCTGACCTCCACAG
TCTTCATTGGCGGGGCCTACTTCTCCTCGCCCGTCGTGACTAATGCCGTT
GAAAGGGTCGTAAGCACTAAAACTCTAATATCCTTTCCCTCCTCTACCGT
ACTCGTGGCCGACAAAACCGTGATGGAAAGCACGTGCCTTGGGTTTGGCT
GTGGGAGTTACAATGGCCCGGACTACGGAGGAGCTCCTAAATTGGAAACG
GGTGAAGCTAATGTTGACATGCCTGCTTTTTTGAAGTTAATTGATGAGAA
AAAGATTGAAAGGGTGGAGTTGTTGGAAGGTGGTAATGTGGCGTACGCGT
ATATTGAGAAGGAAGAAGGGGCGGCGACGACGACGGAAAGGGTACGGATT
GGCGAGGGGTTCCCGATTGAAAATGGGAAGACGTGGTCGAGTCCGTTGTG
GGTGGTTAGGATATTAAAGGACAAGCAAATTCCTTATACGCTCGGCTTTG
ATTTGAGTGGGGCGGCGAAGATGACGAGAACGGTCCCGCGTTTCTTTGAT
TGA
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Synonyms
Publications