NO05G00590, NO05G00590 (gene) Nannochloropsis oceanica

Overview
NameNO05G00590
Unique NameNO05G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr5:199895..200746 -

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Properties
Property NameValue
DescriptionMpv17-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:199895..200746 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO05G00590 vs. NCBI_GenBank
Match: EWM28334.1 (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 1.600e-99
Identity = 193/278 (69.42%), Postives = 213/278 (76.62%), Query Frame = 0
Query:   12 VGLFALVLASTTSAISVLSRTQAPACT-----QRPSPPMMAIVNPFHTERRGGADVRGRKRVP-PALAAPHTYTGNRRMLPATISNPLTLLKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTEDH 284
            VGL ++V+A      SVLS      CT     + PS P + + +     R    D R  + +P  A  AP      R M  A+I +PL LLK  G+ YSNWMMEQPIRANLISG+LMVA+GDGISQAIEVD +TG KKC SWRDLS RRLANAGFAGAVFNGVLLPQWYLL+HK+SPGAET KTIAAKILGNCVAWGCVGNAAIMAMRR+LDGESW   E+AVRRDLWGVM NDYKIWPLYDVLCFTCIPRH+HGLSTGTLGIVWA YLSYVTHTE H
Sbjct:    5 VGLLSVVVAMA----SVLSSAHPICCTVNKVRKLPSTPAVTLAS-LQGGRILRPDRRSHRHMPWSAPYAPRGMLSRRAM--ASIPSPLGLLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: XP_005831957.1 (hypothetical protein GUITHDRAFT_109023 [Guillardia theta CCMP2712] >EKX44977.1 hypothetical protein GUITHDRAFT_109023 [Guillardia theta CCMP2712])

HSP 1 Score: 105.9 bits (263), Expect = 2.100e-19
Identity = 54/185 (29.19%), Postives = 94/185 (50.81%), Query Frame = 0
Query:   94 TLLKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVT 279
            + L  L  +Y   +   P+  + + G  +  LGD  SQ IE +           + +S  R+A A   G  +NG+LLP +Y  +  V P  +    +  K+L +   WG  GN +++A+RR L+G    ++ R  +  +W V K+D+ +W  Y+ LC+  IPR    LST  +  +W+ Y+S+++
Sbjct:   36 SFLGNLANLYHKSVAVSPLATHCLQGAGIAGLGDLCSQFIEKE-----------KRVSSGRIARASATGVFYNGLLLPYYYDAIQGVFPSRKPV-FVLIKVLIDSFLWGFFGNFSLVAVRRYLEGSPAVESVRYAQSVIWPVFKSDFTVWTTYNALCYGAIPREYQPLSTAVVSAMWSTYISFIS 208          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: XP_021928865.1 (protein Mpv17 isoform X1 [Zootermopsis nevadensis] >XP_021928866.1 protein Mpv17 isoform X1 [Zootermopsis nevadensis])

HSP 1 Score: 80.5 bits (197), Expect = 9.300e-12
Identity = 55/195 (28.21%), Postives = 92/195 (47.18%), Query Frame = 0
Query:   88 TISNPLTLLKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKV---SPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTH 280
            +IS  +  L+ L  VY   +   P+    +    ++ +GD +SQ +  D   G+K     R +   R A  GF    F G  L  WY+ + K    S   +TAK +AA  L       C     +M+   +++G + EQT+  ++ D + V+  +YK+WPL   L F+ +P +   L    + I W +YLS+ +H
Sbjct:   11 SISFTMKHLRKLFGVYRAVLYTHPVYTQALQSSFLMGVGDVLSQTVFED--KGIKNIDKGRVI---RFAGIGF---FFMGPALQLWYMRLAKFKAKSSYVQTAKKVAADQLVAAPVILC----TVMSSVSLMEGHNVEQTKEKLKNDYFEVLLTNYKVWPLVQFLNFSLVPVNFQVLLVQAVAIFWNSYLSFKSH 193          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: XP_021928868.1 (protein Mpv17 isoform X2 [Zootermopsis nevadensis] >KDR14760.1 Protein Mpv17 [Zootermopsis nevadensis])

HSP 1 Score: 79.7 bits (195), Expect = 1.600e-11
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = 0
Query:   96 LKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKV---SPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTH 280
            L+ L  VY   +   P+    +    ++ +GD +SQ +  D   G+K     R +   R A  GF    F G  L  WY+ + K    S   +TAK +AA  L       C     +M+   +++G + EQT+  ++ D + V+  +YK+WPL   L F+ +P +   L    + I W +YLS+ +H
Sbjct:    4 LRKLFGVYRAVLYTHPVYTQALQSSFLMGVGDVLSQTVFED--KGIKNIDKGRVI---RFAGIGF---FFMGPALQLWYMRLAKFKAKSSYVQTAKKVAADQLVAAPVILC----TVMSSVSLMEGHNVEQTKEKLKNDYFEVLLTNYKVWPLVQFLNFSLVPVNFQVLLVQAVAIFWNSYLSFKSH 178          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: XP_010688400.1 (PREDICTED: protein sym-1 [Beta vulgaris subsp. vulgaris] >KMT19148.1 hypothetical protein BVRB_1g015440 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.7 bits (195), Expect = 1.600e-11
Identity = 47/175 (26.86%), Postives = 79/175 (45.14%), Query Frame = 0
Query:  103 YSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYV 278
            Y   +  +P     IS  L+ A  D  SQ I + P             S R L  AG+ G +  G     W+  + ++ PG +   T+    +G  + +G + N+   +   +L GE+ E+    ++RDL+  ++N    WPL D L F  IP H+  L+  +   +W  YL+Y+
Sbjct:   64 YLGMLETRPFTTKGISSSLIFAAADFTSQIITLPPSGSFD--------SFRTLRIAGY-GLLIMGPSQHVWFNFLSRILPGRDVFTTVKKITMGQAI-YGPIMNSVFFSYNAVLQGETREEVIARLKRDLFPTLRNGLMYWPLCDFLTFKYIPVHLQPLANSSFAYLWTIYLTYM 228          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: GAQ86036.1 (Mpv17 / PMP22 family domain containing protein [Klebsormidium nitens])

HSP 1 Score: 78.2 bits (191), Expect = 4.600e-11
Identity = 46/182 (25.27%), Postives = 84/182 (46.15%), Query Frame = 0
Query:   94 TLLKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRR-MLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYL 275
            TLL    + Y + + ++P+    I+   + A+ D ++Q           K    + L P++ A     G  F G     ++ +M +V        T+  K++   + +G + N AI+  R  +++G +W  T+  VRRD WGV K  +K+WPL   + ++ +P  +  L    L I W  +L
Sbjct:    3 TLLVVAWQRYLHSLGKRPLITKAITSGTLAAVADVLAQ-----------KMGGAKHLQPKKSALMAVYGLCFGGPTYHFFHKIMDRVFGAKTDPSTVIQKVVVEQLTFGVMYNLAILTYRAYVVEGLTWAATKAKVRRDYWGVQKQGWKLWPLVAFINYSFLPPQLRVLFANVLSIFWVCFL 173          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: ETI45948.1 (hypothetical protein F443_09589 [Phytophthora parasitica P1569])

HSP 1 Score: 77.8 bits (190), Expect = 6.000e-11
Identity = 58/218 (26.61%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   65 RKRVPPALAAPHTYTGNRRMLPATISNPLTL-LKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTE 282
            R R  P +A   T   +R +  +T S   +   + +   Y++ +   P+   +++G  +  LGD +   + ++ E G  K      L  +R A   F G       L  WY  +    PG  TA  +A ++  + + +       I++   ML+G S E     +R D W V K ++ IW    +L F  +P  M  L    +G++W AYLSYV+H+E
Sbjct:    6 RSRTRPVVAISVTRMQHRAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGD-VGCQLVLESEDGDAK------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTA-AVAKRLALDQLGFAPTFLPIILSSVLMLEGHS-EDIPDKLRADWWSVTKANWVIWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: ETK85947.1 (hypothetical protein L915_09384 [Phytophthora parasitica] >ETM45777.1 hypothetical protein L914_09245 [Phytophthora parasitica] >ETP43864.1 hypothetical protein F442_09495 [Phytophthora parasitica P10297])

HSP 1 Score: 77.4 bits (189), Expect = 7.900e-11
Identity = 57/218 (26.15%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   65 RKRVPPALAAPHTYTGNRRMLPATISNPLTL-LKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTE 282
            R R  P +A   T   +R +  +T S   +   + +   Y++ +   P+   +++G  +  LGD +   + ++ E G  K      L  +R A   F G       L  WY  +    PG  TA  +A ++  + + +       I++   ML+G S E     +R D W V K ++ +W    +L F  +P  M  L    +G++W AYLSYV+H+E
Sbjct:    6 RSRTRPVVAISVTRMQHRAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGD-VGCQLVLESEDGDAK------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTA-AVAKRLALDQLGFAPTFLPIILSSVLMLEGHS-EDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: ETO74643.1 (hypothetical protein F444_09651 [Phytophthora parasitica P1976])

HSP 1 Score: 77.4 bits (189), Expect = 7.900e-11
Identity = 57/218 (26.15%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   65 RKRVPPALAAPHTYTGNRRMLPATISNPLTL-LKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTE 282
            R R  P +A   T   +R +  +T S   +   + +   Y++ +   P+   +++G  +  LGD +   + ++ E G  K      L  +R A   F G       L  WY  +    PG  TA  +A ++  + + +       I++   ML+G S E     +R D W V K ++ +W    +L F  +P  M  L    +G++W AYLSYV+H+E
Sbjct:    6 RSRTRPVVAISVTRMQHRAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGD-VGCQLVLESEDGDAK------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTA-AVAKRLALDQLGFAPTFLPIILSSVLMLEGHS-EDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSHSE 214          
BLAST of NO05G00590 vs. NCBI_GenBank
Match: ETL39355.1 (hypothetical protein L916_09288 [Phytophthora parasitica] >ETL92506.1 hypothetical protein L917_09221 [Phytophthora parasitica] >ETP15776.1 hypothetical protein F441_09521 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 77.0 bits (188), Expect = 1.000e-10
Identity = 57/218 (26.15%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   65 RKRVPPALAAPHTYTGNRRMLPATISNPLTL-LKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTE 282
            R R  P +A   T   +R +  +T S   +   + +   Y++ +   P+   +++G  +  LGD +   + ++ E G  K      L  +R A   F G       L  WY  +    PG  TA  +A ++  + + +       I++   ML+G S E     +R D W V K ++ +W    +L F  +P  M  L    +G++W AYLSYV+H+E
Sbjct:    6 RSRTRPVVAISVTRMQHRAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGD-VGCQLVLESEDGDAK------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTA-AVAKRLALDQLGFAPTFLPIILSSVLMLEGHS-EDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVVGLLWNAYLSYVSHSE 214          
The following BLAST results are available for this feature:
BLAST of NO05G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28334.11.600e-9969.42mpv17-like protein [Nannochloropsis gaditana][more]
XP_005831957.12.100e-1929.19hypothetical protein GUITHDRAFT_109023 [Guillardia... [more]
XP_021928865.19.300e-1228.21protein Mpv17 isoform X1 [Zootermopsis nevadensis]... [more]
XP_021928868.11.600e-1128.34protein Mpv17 isoform X2 [Zootermopsis nevadensis]... [more]
XP_010688400.11.600e-1126.86PREDICTED: protein sym-1 [Beta vulgaris subsp. vul... [more]
GAQ86036.14.600e-1125.27Mpv17 / PMP22 family domain containing protein [Kl... [more]
ETI45948.16.000e-1126.61hypothetical protein F443_09589 [Phytophthora para... [more]
ETK85947.17.900e-1126.15hypothetical protein L915_09384 [Phytophthora para... [more]
ETO74643.17.900e-1126.15hypothetical protein F444_09651 [Phytophthora para... [more]
ETL39355.11.000e-1026.15hypothetical protein L916_09288 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003822NSK003822Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00590.1NO05G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100109g6gene2252Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00590.1NO05G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00590 ID=NO05G00590|Name=NO05G00590|organism=Nannochloropsis oceanica|type=gene|length=852bp
ATGGCCGCCTCGTCCCGCGCAACGCTGCAGTTCGTAGGGCTGTTTGCCCT
GGTTTTGGCAAGCACCACTTCGGCTATCTCAGTCCTCTCCCGGACTCAAG
CACCAGCATGCACGCAGAGACCAAGCCCACCGATGATGGCAATAGTCAAC
CCTTTCCATACCGAACGTCGAGGCGGAGCGGATGTTAGAGGTCGGAAACG
CGTGCCTCCCGCCCTTGCAGCCCCCCACACCTACACGGGCAACAGGCGCA
TGTTGCCCGCGACGATCTCCAACCCGCTGACACTCCTCAAGACCTTGGGC
CGGGTGTACAGCAACTGGATGATGGAGCAACCCATCCGCGCGAACCTGAT
CTCAGGCGTCTTGATGGTGGCTCTCGGAGATGGGATCAGTCAAGCTATCG
AAGTTGACCCCGAAACAGGCCTAAAAAAATGTAAATCCTGGCGGGATCTT
TCCCCCCGTCGCCTCGCCAATGCTGGGTTTGCGGGCGCGGTTTTTAATGG
TGTGTTGCTGCCGCAATGGTATTTGTTGATGCATAAGGTGTCGCCTGGGG
CAGAGACTGCGAAAACGATCGCAGCGAAGATTCTCGGGAATTGCGTGGCG
TGGGGATGTGTGGGCAATGCGGCTATCATGGCGATGAGGCGGATGTTGGA
CGGGGAGAGCTGGGAGCAGACGGAGCGGGCGGTGAGGAGGGACTTATGGG
GGGTGATGAAGAATGATTATAAAATATGGCCTTTATATGACGTGTTGTGT
TTTACATGTATCCCGAGACATATGCATGGGCTAAGCACGGGAACGTTGGG
CATCGTATGGGCGGCTTATTTGTCGTACGTCACGCACACCGAGGATCATT
AG
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protein sequence of NO05G00590.1

>NO05G00590.1-protein ID=NO05G00590.1-protein|Name=NO05G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MAASSRATLQFVGLFALVLASTTSAISVLSRTQAPACTQRPSPPMMAIVN
PFHTERRGGADVRGRKRVPPALAAPHTYTGNRRMLPATISNPLTLLKTLG
RVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDL
SPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVA
WGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLC
FTCIPRHMHGLSTGTLGIVWAAYLSYVTHTEDH*
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Synonyms
Publications