NO05G00590.1, NO05G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00590.1
Unique NameNO05G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr5:199895..200746 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:199895..200746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00590.1 vs.
Match: EWM28334.1 (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 1.600e-99
Identity = 193/278 (69.42%), Postives = 213/278 (76.62%), Query Frame = 0 
Query:   12 VGLFALVLASTTSAISVLSRTQAPACT-----QRPSPPMMAIVNPFHTERRGGADVRGRKRVP-PALAAPHTYTGNRRMLPATISNPLTLLKTLGRVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDLSPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVAWGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLCFTCIPRHMHGLSTGTLGIVWAAYLSYVTHTEDH 284
            VGL ++V+A      SVLS      CT     + PS P + + +     R    D R  + +P  A  AP      R M  A+I +PL LLK  G+ YSNWMMEQPIRANLISG+LMVA+GDGISQAIEVD +TG KKC SWRDLS RRLANAGFAGAVFNGVLLPQWYLL+HK+SPGAET KTIAAKILGNCVAWGCVGNAAIMAMRR+LDGESW   E+AVRRDLWGVM NDYKIWPLYDVLCFTCIPRH+HGLSTGTLGIVWA YLSYVTHTE H
Sbjct:    5 VGLLSVVVAMA----SVLSSAHPICCTVNKVRKLPSTPAVTLAS-LQGGRILRPDRRSHRHMPWSAPYAPRGMLSRRAM--ASIPSPLGLLKAFGKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDAEQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVTHTEGH 275
The following BLAST results are available for this feature:
BLAST of NO05G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28334.11.600e-9969.42mpv17-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00590NO05G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00590.1NO05G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00590.1.cds1NO05G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00590.1 ID=NO05G00590.1|Name=NO05G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGGCCGCCTCGTCCCGCGCAACGCTGCAGTTCGTAGGGCTGTTTGCCCT
GGTTTTGGCAAGCACCACTTCGGCTATCTCAGTCCTCTCCCGGACTCAAG
CACCAGCATGCACGCAGAGACCAAGCCCACCGATGATGGCAATAGTCAAC
CCTTTCCATACCGAACGTCGAGGCGGAGCGGATGTTAGAGGTCGGAAACG
CGTGCCTCCCGCCCTTGCAGCCCCCCACACCTACACGGGCAACAGGCGCA
TGTTGCCCGCGACGATCTCCAACCCGCTGACACTCCTCAAGACCTTGGGC
CGGGTGTACAGCAACTGGATGATGGAGCAACCCATCCGCGCGAACCTGAT
CTCAGGCGTCTTGATGGTGGCTCTCGGAGATGGGATCAGTCAAGCTATCG
AAGTTGACCCCGAAACAGGCCTAAAAAAATGTAAATCCTGGCGGGATCTT
TCCCCCCGTCGCCTCGCCAATGCTGGGTTTGCGGGCGCGGTTTTTAATGG
TGTGTTGCTGCCGCAATGGTATTTGTTGATGCATAAGGTGTCGCCTGGGG
CAGAGACTGCGAAAACGATCGCAGCGAAGATTCTCGGGAATTGCGTGGCG
TGGGGATGTGTGGGCAATGCGGCTATCATGGCGATGAGGCGGATGTTGGA
CGGGGAGAGCTGGGAGCAGACGGAGCGGGCGGTGAGGAGGGACTTATGGG
GGGTGATGAAGAATGATTATAAAATATGGCCTTTATATGACGTGTTGTGT
TTTACATGTATCCCGAGACATATGCATGGGCTAAGCACGGGAACGTTGGG
CATCGTATGGGCGGCTTATTTGTCGTACGTCACGCACACCGAGGATCATT
AG
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protein sequence of NO05G00590.1

>NO05G00590.1-protein ID=NO05G00590.1-protein|Name=NO05G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MAASSRATLQFVGLFALVLASTTSAISVLSRTQAPACTQRPSPPMMAIVN
PFHTERRGGADVRGRKRVPPALAAPHTYTGNRRMLPATISNPLTLLKTLG
RVYSNWMMEQPIRANLISGVLMVALGDGISQAIEVDPETGLKKCKSWRDL
SPRRLANAGFAGAVFNGVLLPQWYLLMHKVSPGAETAKTIAAKILGNCVA
WGCVGNAAIMAMRRMLDGESWEQTERAVRRDLWGVMKNDYKIWPLYDVLC
FTCIPRHMHGLSTGTLGIVWAAYLSYVTHTEDH*
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mRNA from alignment at chr5:199895..200746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00590.1 ID=NO05G00590.1|Name=NO05G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp|location=Sequence derived from alignment at chr5:199895..200746- (Nannochloropsis oceanica)
ATGGCCGCCTCGTCCCGCGCAACGCTGCAGTTCGTAGGGCTGTTTGCCCT
GGTTTTGGCAAGCACCACTTCGGCTATCTCAGTCCTCTCCCGGACTCAAG
CACCAGCATGCACGCAGAGACCAAGCCCACCGATGATGGCAATAGTCAAC
CCTTTCCATACCGAACGTCGAGGCGGAGCGGATGTTAGAGGTCGGAAACG
CGTGCCTCCCGCCCTTGCAGCCCCCCACACCTACACGGGCAACAGGCGCA
TGTTGCCCGCGACGATCTCCAACCCGCTGACACTCCTCAAGACCTTGGGC
CGGGTGTACAGCAACTGGATGATGGAGCAACCCATCCGCGCGAACCTGAT
CTCAGGCGTCTTGATGGTGGCTCTCGGAGATGGGATCAGTCAAGCTATCG
AAGTTGACCCCGAAACAGGCCTAAAAAAATGTAAATCCTGGCGGGATCTT
TCCCCCCGTCGCCTCGCCAATGCTGGGTTTGCGGGCGCGGTTTTTAATGG
TGTGTTGCTGCCGCAATGGTATTTGTTGATGCATAAGGTGTCGCCTGGGG
CAGAGACTGCGAAAACGATCGCAGCGAAGATTCTCGGGAATTGCGTGGCG
TGGGGATGTGTGGGCAATGCGGCTATCATGGCGATGAGGCGGATGTTGGA
CGGGGAGAGCTGGGAGCAGACGGAGCGGGCGGTGAGGAGGGACTTATGGG
GGGTGATGAAGAATGATTATAAAATATGGCCTTTATATGACGTGTTGTGT
TTTACATGTATCCCGAGACATATGCATGGGCTAAGCACGGGAACGTTGGG
CATCGTATGGGCGGCTTATTTGTCGTACGTCACGCACACCGAGGATCATT
AG
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Coding sequence (CDS) from alignment at chr5:199895..200746-

>NO05G00590.1 ID=NO05G00590.1|Name=NO05G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr5:199895..200746- (Nannochloropsis oceanica)
ATGGCCGCCTCGTCCCGCGCAACGCTGCAGTTCGTAGGGCTGTTTGCCCT
GGTTTTGGCAAGCACCACTTCGGCTATCTCAGTCCTCTCCCGGACTCAAG
CACCAGCATGCACGCAGAGACCAAGCCCACCGATGATGGCAATAGTCAAC
CCTTTCCATACCGAACGTCGAGGCGGAGCGGATGTTAGAGGTCGGAAACG
CGTGCCTCCCGCCCTTGCAGCCCCCCACACCTACACGGGCAACAGGCGCA
TGTTGCCCGCGACGATCTCCAACCCGCTGACACTCCTCAAGACCTTGGGC
CGGGTGTACAGCAACTGGATGATGGAGCAACCCATCCGCGCGAACCTGAT
CTCAGGCGTCTTGATGGTGGCTCTCGGAGATGGGATCAGTCAAGCTATCG
AAGTTGACCCCGAAACAGGCCTAAAAAAATGTAAATCCTGGCGGGATCTT
TCCCCCCGTCGCCTCGCCAATGCTGGGTTTGCGGGCGCGGTTTTTAATGG
TGTGTTGCTGCCGCAATGGTATTTGTTGATGCATAAGGTGTCGCCTGGGG
CAGAGACTGCGAAAACGATCGCAGCGAAGATTCTCGGGAATTGCGTGGCG
TGGGGATGTGTGGGCAATGCGGCTATCATGGCGATGAGGCGGATGTTGGA
CGGGGAGAGCTGGGAGCAGACGGAGCGGGCGGTGAGGAGGGACTTATGGG
GGGTGATGAAGAATGATTATAAAATATGGCCTTTATATGACGTGTTGTGT
TTTACATGTATCCCGAGACATATGCATGGGCTAAGCACGGGAACGTTGGG
CATCGTATGGGCGGCTTATTTGTCGTACGTCACGCACACCGAGGATCATT
AG
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Synonyms
Publications