NO05G00580, NO05G00580 (gene) Nannochloropsis oceanica

Overview
NameNO05G00580
Unique NameNO05G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr5:198051..199253 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:198051..199253 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00580 vs. NCBI_GenBank
Match: EWM28319.1 (hypothetical protein Naga_100109g8 [Nannochloropsis gaditana])

HSP 1 Score: 278.1 bits (710), Expect = 4.300e-71
Identity = 182/430 (42.33%), Postives = 229/430 (53.26%), Query Frame = 0 
Query:    5 PSVSPPPIFADSSLSVASLLVRLPNQQDEHQQKS---LSVDREGRLQTALQTLEREGAVILHDCVSPDSLAECRLAIEPVVNALLFAA----------XXXXXXXXXXXXXXXXXXXXXXXTKDSICTTEKRQLGDESIRTRYI-----TEDGKDQKKRDLFSCFDEARVLTADARRALSITRVAKIGTGKKNIHFDPYY---STSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCPSVTL------------------LHPHSAMEALAEKAGILSIIRNYCGEEVTLAESGFSITRPGGEGLEWHADGREGECTVIMSLDDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEAEEGEGEGGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAREEGGREVGRD 396
            P+ +    F  SS ++ +LLV LP  Q++ +  S      D E  L+ ALQTL+ EGAVIL DC+SP SL +CR  IE VV+ALL A                                      I   +    G +++           E   D++ + L+S FD+A+V++AD RR L ITR+AKIG GKKN+HFDPYY   ST+                                          S P+                     LHPH+AMEALAE AG+  ++R YCG++VTLAE+G SITRP GEGLEWHADGREGECTVIMSL+DI +  GRLG++ +SHLMLDR+ SEDFD+DLM++V R       EG G  G VWYAYRKG PIVFDARTVH AEGS   G G  +E GR V R+
Sbjct:    4 PTAALQSRFVGSSTNLGALLVPLPYLQEDQEHDSPQEYLADTEKCLEVALQTLKSEGAVILQDCLSPSSLEKCRGVIEIVVDALLSAVATNSLIAPINKVQSLPFAAQYCTRTAGPGMNGHLDPGISRHDSIPSGSDTVSCNATGFNSSRELPHDREIKALYSAFDDAKVVSADVRRHLGITRIAKIGRGKKNVHFDPYYTPLSTTKNKVKKTYAPDTETLSSKPMDEHGILENTQPFNSKSPSRALCSHPTAAAATPEASSPPYVAAPFGNSLHPHAAMEALAESAGVARLVRAYCGDDVTLAETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHLMLDREASEDFDQDLMDLVGR-------EG-GRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRG--QEKGRVVARE 423
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BLAST of NO05G00580 vs. NCBI_GenBank
Match: CEL98577.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-16
Identity = 62/146 (42.47%), Postives = 77/146 (52.74%), Query Frame = 0 
Query:  242 HSAMEALAEKAGILSIIRNYCGEEVT--LAESGFSITRPGGEGLEWHADGREGECTVIMSLDDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEAEEGEGEGGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAR 386
            H AM    + AGI  I++   G E T  L+E+G S+T PGG  +EWHADG  GE TV+MSLD   R+ G LG+   SHL    D   D      E   R +  E EE       VWY YR+G P V DART H   GS+ + +  R
Sbjct:   93 HEAMAEFMQTAGIPDILQAALGSERTLVLSETGLSLTLPGGSEIEWHADGDAGEFTVLMSLDTFDRSTGPLGIRLGSHLDYVTDHRAD------EAAGRKEKEEREE-------VWYCYREGVPCVIDARTQHM--GSANQYSSLR 223
The following BLAST results are available for this feature:
BLAST of NO05G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28319.14.300e-7142.33hypothetical protein Naga_100109g8 [Nannochloropsi... [more]
CEL98577.11.400e-1642.47unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003823NSK003823Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00580.1NO05G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564663gene_2851Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100109g8gene2251Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00580.1NO05G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00580 ID=NO05G00580|Name=NO05G00580|organism=Nannochloropsis oceanica|type=gene|length=1203bp
ATGGCTCTATCACCGTCGGTGTCACCACCACCCATCTTTGCGGACTCCTC
CCTTAGCGTGGCCTCCCTCCTCGTTCGACTTCCCAACCAGCAAGACGAGC
ACCAGCAAAAATCGCTGTCTGTAGACCGGGAAGGGCGCTTACAAACTGCT
CTCCAAACGCTCGAGAGAGAAGGTGCTGTCATTTTGCATGATTGCGTCTC
TCCTGACAGCCTTGCCGAGTGTCGCCTGGCCATCGAGCCCGTCGTAAACG
CGCTGCTCTTTGCTGCTGCCGCTACCGCTACTGCTGCTGCGACTGCTACT
ATTGCTGTCGCCGCTACTGCTATTGCCTCACCTTCTACTAAGGATTCCAT
TTGCACTACAGAAAAGAGACAATTGGGTGATGAAAGCATTAGAACAAGGT
ATATAACAGAAGACGGCAAAGATCAGAAAAAGCGAGACCTTTTCTCTTGC
TTTGACGAAGCCAGGGTATTAACAGCGGATGCCCGTCGCGCCCTGAGTAT
CACCAGAGTAGCCAAGATCGGAACCGGGAAAAAGAACATTCATTTCGATC
CGTACTACTCAACTTCCCCCTCCCCCTCTGCTGCTAAACCCGCACCGTTG
CAACCACAACGCCAAGGTGCTGTTGCCGCTGCTGCTGCTGCCGCTGCTGC
TGCTGCCGCTGCTGCTGCTCCAGCAGCACCTCCTCATCCTTCCTCCTGCC
CTTCAGTTACATTATTGCACCCTCACAGTGCCATGGAAGCCCTCGCGGAG
AAGGCAGGCATACTCTCTATCATTCGAAACTATTGCGGGGAGGAGGTGAC
TCTGGCAGAAAGTGGCTTCTCCATCACCCGGCCAGGAGGGGAGGGGCTGG
AGTGGCACGCGGATGGGAGGGAGGGGGAATGTACAGTCATCATGAGTTTG
GATGACATAGGGAGGAACAAAGGGAGGTTGGGGGTCGTGAGAAAGAGTCA
CTTGATGCTTGATAGGGATGGAAGTGAAGACTTTGACCGGGACTTGATGG
AGGTGGTGGAGAGGGCGCAAGCGACGGAGGCGGAGGAGGGGGAGGGGGAG
GGAGGGGTGGTCTGGTATGCGTATCGAAAGGGTTGTCCGATCGTGTTCGA
CGCGAGGACGGTGCACGCTGCTGAGGGAAGTAGTCGAGAAGGGACGGGAG
CAAGGGAGGAGGGGGGGAGGGAGGTAGGGAGGGATGGGCGGAGTTCCGGG
TGA
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protein sequence of NO05G00580.1

>NO05G00580.1-protein ID=NO05G00580.1-protein|Name=NO05G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MALSPSVSPPPIFADSSLSVASLLVRLPNQQDEHQQKSLSVDREGRLQTA
LQTLEREGAVILHDCVSPDSLAECRLAIEPVVNALLFAAAATATAAATAT
IAVAATAIASPSTKDSICTTEKRQLGDESIRTRYITEDGKDQKKRDLFSC
FDEARVLTADARRALSITRVAKIGTGKKNIHFDPYYSTSPSPSAAKPAPL
QPQRQGAVAAAAAAAAAAAAAAAPAAPPHPSSCPSVTLLHPHSAMEALAE
KAGILSIIRNYCGEEVTLAESGFSITRPGGEGLEWHADGREGECTVIMSL
DDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEAEEGEGE
GGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAREEGGREVGRDGRSSG
*
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Synonyms
Publications