NO05G00580.1, NO05G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00580.1
Unique NameNO05G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1203
Alignment locationchr5:198051..199253 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:198051..199253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00580.1 vs.
Match: EWM28319.1 (hypothetical protein Naga_100109g8 [Nannochloropsis gaditana])

HSP 1 Score: 281.6 bits (719), Expect = 3.900e-72
Identity = 202/435 (46.44%), Postives = 253/435 (58.16%), Query Frame = 0 
Query:    5 PSVSPPPIFADSSLSVASLLVRLPNQQDEHQQKSLS---VDREGRLQTALQTLEREGAVILHDCVSPDSLAECRLAIEPVVNALLFAAAATATAAATATI------AVAATAIASP----------STKDSIC----TTEKRQLGDESIRTRYITEDGKDQKKRDLFSCFDEARVLTADARRALSITRVAKIGTGKKNIHFDPYYST------------SPSPSAAKPAPL---------QPQRQGAVAAAAAAAAAAAAAAAPAAPPHPSSCPSVTLLHPHSAMEALAEKAGILSIIRNYCGEEVTLAESGFSITRPGGEGLEWHADGREGECTVIMSLDDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEAEEGEGEGGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAREEGGREVGRD 396
            P+ +    F  SS ++ +LLV LP  Q++ +  S      D E  L+ ALQTL+ EGAVIL DC+SP SL +CR  IE VV+ALL A A  +  A    +      A   T  A P          S  DSI     T      G  S R     E   D++ + L+S FD+A+V++AD RR L ITR+AKIG GKKN+HFDPYY+             +P        P+         QP    + + A  +   AAAA   A+ P   + P    LHPH+AMEALAE AG+  ++R YCG++VTLAE+G SITRP GEGLEWHADGREGECTVIMSL+DI +  GRLG++ +SHLMLDR+ SEDFD+DLM++V R       EG G  G VWYAYRKG PIVFDARTVH AEGS   G G  +E GR V R+
Sbjct:    4 PTAALQSRFVGSSTNLGALLVPLPYLQEDQEHDSPQEYLADTEKCLEVALQTLKSEGAVILQDCLSPSSLEKCRGVIEIVVDALLSAVATNSLIAPINKVQSLPFAAQYCTRTAGPGMNGHLDPGISRHDSIPSGSDTVSCNATGFNSSR-----ELPHDREIKALYSAFDDAKVVSADVRRHLGITRIAKIGRGKKNVHFDPYYTPLSTTKNKVKKTYAPDTETLSSKPMDEHGILENTQPFNSKSPSRALCSHPTAAAATPEASSPPYVAAPFGNSLHPHAAMEALAESAGVARLVRAYCGDDVTLAETGISITRPEGEGLEWHADGREGECTVIMSLEDIRQTMGRLGLIPRSHLMLDREASEDFDQDLMDLVGR-------EG-GRDGAVWYAYRKGQPIVFDARTVHTAEGSVERGRG--QEKGRVVARE 423
The following BLAST results are available for this feature:
BLAST of NO05G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28319.13.900e-7246.44hypothetical protein Naga_100109g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00580NO05G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00580.1NO05G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00580.1.cds1NO05G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00580.1 ID=NO05G00580.1|Name=NO05G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
ATGGCTCTATCACCGTCGGTGTCACCACCACCCATCTTTGCGGACTCCTC
CCTTAGCGTGGCCTCCCTCCTCGTTCGACTTCCCAACCAGCAAGACGAGC
ACCAGCAAAAATCGCTGTCTGTAGACCGGGAAGGGCGCTTACAAACTGCT
CTCCAAACGCTCGAGAGAGAAGGTGCTGTCATTTTGCATGATTGCGTCTC
TCCTGACAGCCTTGCCGAGTGTCGCCTGGCCATCGAGCCCGTCGTAAACG
CGCTGCTCTTTGCTGCTGCCGCTACCGCTACTGCTGCTGCGACTGCTACT
ATTGCTGTCGCCGCTACTGCTATTGCCTCACCTTCTACTAAGGATTCCAT
TTGCACTACAGAAAAGAGACAATTGGGTGATGAAAGCATTAGAACAAGGT
ATATAACAGAAGACGGCAAAGATCAGAAAAAGCGAGACCTTTTCTCTTGC
TTTGACGAAGCCAGGGTATTAACAGCGGATGCCCGTCGCGCCCTGAGTAT
CACCAGAGTAGCCAAGATCGGAACCGGGAAAAAGAACATTCATTTCGATC
CGTACTACTCAACTTCCCCCTCCCCCTCTGCTGCTAAACCCGCACCGTTG
CAACCACAACGCCAAGGTGCTGTTGCCGCTGCTGCTGCTGCCGCTGCTGC
TGCTGCCGCTGCTGCTGCTCCAGCAGCACCTCCTCATCCTTCCTCCTGCC
CTTCAGTTACATTATTGCACCCTCACAGTGCCATGGAAGCCCTCGCGGAG
AAGGCAGGCATACTCTCTATCATTCGAAACTATTGCGGGGAGGAGGTGAC
TCTGGCAGAAAGTGGCTTCTCCATCACCCGGCCAGGAGGGGAGGGGCTGG
AGTGGCACGCGGATGGGAGGGAGGGGGAATGTACAGTCATCATGAGTTTG
GATGACATAGGGAGGAACAAAGGGAGGTTGGGGGTCGTGAGAAAGAGTCA
CTTGATGCTTGATAGGGATGGAAGTGAAGACTTTGACCGGGACTTGATGG
AGGTGGTGGAGAGGGCGCAAGCGACGGAGGCGGAGGAGGGGGAGGGGGAG
GGAGGGGTGGTCTGGTATGCGTATCGAAAGGGTTGTCCGATCGTGTTCGA
CGCGAGGACGGTGCACGCTGCTGAGGGAAGTAGTCGAGAAGGGACGGGAG
CAAGGGAGGAGGGGGGGAGGGAGGTAGGGAGGGATGGGCGGAGTTCCGGG
TGA
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protein sequence of NO05G00580.1

>NO05G00580.1-protein ID=NO05G00580.1-protein|Name=NO05G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MALSPSVSPPPIFADSSLSVASLLVRLPNQQDEHQQKSLSVDREGRLQTA
LQTLEREGAVILHDCVSPDSLAECRLAIEPVVNALLFAAAATATAAATAT
IAVAATAIASPSTKDSICTTEKRQLGDESIRTRYITEDGKDQKKRDLFSC
FDEARVLTADARRALSITRVAKIGTGKKNIHFDPYYSTSPSPSAAKPAPL
QPQRQGAVAAAAAAAAAAAAAAAPAAPPHPSSCPSVTLLHPHSAMEALAE
KAGILSIIRNYCGEEVTLAESGFSITRPGGEGLEWHADGREGECTVIMSL
DDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEAEEGEGE
GGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAREEGGREVGRDGRSSG
*
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mRNA from alignment at chr5:198051..199253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00580.1 ID=NO05G00580.1|Name=NO05G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp|location=Sequence derived from alignment at chr5:198051..199253+ (Nannochloropsis oceanica)
ATGGCTCTATCACCGTCGGTGTCACCACCACCCATCTTTGCGGACTCCTC
CCTTAGCGTGGCCTCCCTCCTCGTTCGACTTCCCAACCAGCAAGACGAGC
ACCAGCAAAAATCGCTGTCTGTAGACCGGGAAGGGCGCTTACAAACTGCT
CTCCAAACGCTCGAGAGAGAAGGTGCTGTCATTTTGCATGATTGCGTCTC
TCCTGACAGCCTTGCCGAGTGTCGCCTGGCCATCGAGCCCGTCGTAAACG
CGCTGCTCTTTGCTGCTGCCGCTACCGCTACTGCTGCTGCGACTGCTACT
ATTGCTGTCGCCGCTACTGCTATTGCCTCACCTTCTACTAAGGATTCCAT
TTGCACTACAGAAAAGAGACAATTGGGTGATGAAAGCATTAGAACAAGGT
ATATAACAGAAGACGGCAAAGATCAGAAAAAGCGAGACCTTTTCTCTTGC
TTTGACGAAGCCAGGGTATTAACAGCGGATGCCCGTCGCGCCCTGAGTAT
CACCAGAGTAGCCAAGATCGGAACCGGGAAAAAGAACATTCATTTCGATC
CGTACTACTCAACTTCCCCCTCCCCCTCTGCTGCTAAACCCGCACCGTTG
CAACCACAACGCCAAGGTGCTGTTGCCGCTGCTGCTGCTGCCGCTGCTGC
TGCTGCCGCTGCTGCTGCTCCAGCAGCACCTCCTCATCCTTCCTCCTGCC
CTTCAGTTACATTATTGCACCCTCACAGTGCCATGGAAGCCCTCGCGGAG
AAGGCAGGCATACTCTCTATCATTCGAAACTATTGCGGGGAGGAGGTGAC
TCTGGCAGAAAGTGGCTTCTCCATCACCCGGCCAGGAGGGGAGGGGCTGG
AGTGGCACGCGGATGGGAGGGAGGGGGAATGTACAGTCATCATGAGTTTG
GATGACATAGGGAGGAACAAAGGGAGGTTGGGGGTCGTGAGAAAGAGTCA
CTTGATGCTTGATAGGGATGGAAGTGAAGACTTTGACCGGGACTTGATGG
AGGTGGTGGAGAGGGCGCAAGCGACGGAGGCGGAGGAGGGGGAGGGGGAG
GGAGGGGTGGTCTGGTATGCGTATCGAAAGGGTTGTCCGATCGTGTTCGA
CGCGAGGACGGTGCACGCTGCTGAGGGAAGTAGTCGAGAAGGGACGGGAG
CAAGGGAGGAGGGGGGGAGGGAGGTAGGGAGGGATGGGCGGAGTTCCGGG
TGA
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Coding sequence (CDS) from alignment at chr5:198051..199253+

>NO05G00580.1 ID=NO05G00580.1|Name=NO05G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr5:198051..199253+ (Nannochloropsis oceanica)
ATGGCTCTATCACCGTCGGTGTCACCACCACCCATCTTTGCGGACTCCTC
CCTTAGCGTGGCCTCCCTCCTCGTTCGACTTCCCAACCAGCAAGACGAGC
ACCAGCAAAAATCGCTGTCTGTAGACCGGGAAGGGCGCTTACAAACTGCT
CTCCAAACGCTCGAGAGAGAAGGTGCTGTCATTTTGCATGATTGCGTCTC
TCCTGACAGCCTTGCCGAGTGTCGCCTGGCCATCGAGCCCGTCGTAAACG
CGCTGCTCTTTGCTGCTGCCGCTACCGCTACTGCTGCTGCGACTGCTACT
ATTGCTGTCGCCGCTACTGCTATTGCCTCACCTTCTACTAAGGATTCCAT
TTGCACTACAGAAAAGAGACAATTGGGTGATGAAAGCATTAGAACAAGGT
ATATAACAGAAGACGGCAAAGATCAGAAAAAGCGAGACCTTTTCTCTTGC
TTTGACGAAGCCAGGGTATTAACAGCGGATGCCCGTCGCGCCCTGAGTAT
CACCAGAGTAGCCAAGATCGGAACCGGGAAAAAGAACATTCATTTCGATC
CGTACTACTCAACTTCCCCCTCCCCCTCTGCTGCTAAACCCGCACCGTTG
CAACCACAACGCCAAGGTGCTGTTGCCGCTGCTGCTGCTGCCGCTGCTGC
TGCTGCCGCTGCTGCTGCTCCAGCAGCACCTCCTCATCCTTCCTCCTGCC
CTTCAGTTACATTATTGCACCCTCACAGTGCCATGGAAGCCCTCGCGGAG
AAGGCAGGCATACTCTCTATCATTCGAAACTATTGCGGGGAGGAGGTGAC
TCTGGCAGAAAGTGGCTTCTCCATCACCCGGCCAGGAGGGGAGGGGCTGG
AGTGGCACGCGGATGGGAGGGAGGGGGAATGTACAGTCATCATGAGTTTG
GATGACATAGGGAGGAACAAAGGGAGGTTGGGGGTCGTGAGAAAGAGTCA
CTTGATGCTTGATAGGGATGGAAGTGAAGACTTTGACCGGGACTTGATGG
AGGTGGTGGAGAGGGCGCAAGCGACGGAGGCGGAGGAGGGGGAGGGGGAG
GGAGGGGTGGTCTGGTATGCGTATCGAAAGGGTTGTCCGATCGTGTTCGA
CGCGAGGACGGTGCACGCTGCTGAGGGAAGTAGTCGAGAAGGGACGGGAG
CAAGGGAGGAGGGGGGGAGGGAGGTAGGGAGGGATGGGCGGAGTTCCGGG
TGA
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Synonyms
Publications