NO05G00420, NO05G00420 (gene) Nannochloropsis oceanica

Overview
NameNO05G00420
Unique NameNO05G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2346
Alignment locationchr5:158550..160895 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:158550..160895 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00420 vs. NCBI_GenBank
Match: EWM28340.1 (hypothetical protein Naga_100367g2 [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 3.500e-8
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 0 
Query:  188 PLSIPAGVNRLYEQAKLQRERLAQRVAEVTASECTFKPAILPRSASTXXXXXXXXXXXXXXXXXXXXXXXXERAMMYQKKVEAKVASMKKEQEEKGKPTFSPKIPTHVPPKG 300
            P S     NRLY +A  QRERLA+R+A+    ECTF P ++ R+AST                        +RA  YQ+ VE+K+++++KEQ  + +P+F P +P H   KG
Sbjct:   23 PASSSLPSNRLYAEAARQRERLARRIADTRVPECTFHPTLVSRAAST---------SRTRPGDRASEIPFVDRAQSYQRHVESKLSALRKEQAAQEQPSFRPTLPVHTGKKG 125
The following BLAST results are available for this feature:
BLAST of NO05G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28340.13.500e-836.61hypothetical protein Naga_100367g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003845NSK003845Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00420.1NO05G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669692gene_2835Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100367g2gene2234Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00420.1NO05G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00420 ID=NO05G00420|Name=NO05G00420|organism=Nannochloropsis oceanica|type=gene|length=2346bp
ATGAAACGTGTAACCCGCTCACAAGCAGCGGCGGCGGCCGCCGCTGCAGC
TGCTGCCGCCGAGGTTGAGGCAGGCAAGGCTCAGTCCACTACCACGCAAG
AACAACTTGAGGGGCCGCAAATGCAGACGCCGCCCCTGCAAAAGCAGCCG
GCATCTTCCTCCTCCACTATTACGACTATCGCCACCACTGAGGCCGGCGT
CCGTCTGTACGAACAAGCCAAGGCCATGCAACAACGCCGGAAGAGCCTTA
TGAAGGAGAAGCCAGCGGACTGCACGTTCAGTCCGAAGCTCGTCACGTCT
ACCAGACGAGCCGGGAAGACAGGTGGCAGCGCAACAAACGAGGAGGAAGA
CCCCCTCGCCAGCACCACCAAGCGTTTCGAACGTCTTTACCTCGATGCAC
AGACCCGCGCGGCAAAGCTTGAAGGGGCAAAGATGGAGCATGAACAAACA
TTGGCAGCGCAAGCCCCCGGCAAACCGCACACCATCCCTCCTCCCTCCTC
CAAGAGCAAGACCAGCAGCAGCAGAAAGCCTCCCTCCTCCCCCACCTCCT
CCTCCCCCGCCCCCTTATCTATTCCGGCAGGTGTCAATCGCCTCTACGAG
CAAGCCAAGCTCCAACGCGAGCGACTAGCCCAGCGGGTCGCCGAAGTCAC
CGCTAGTGAATGCACCTTCAAGCCTGCCATCCTACCTCGCTCGGCCTCCA
CTCGCAGAAGGCGACATGGGGAAGGCGGGACAGAGGAAGGGGAGGAGGAT
GCAAGGAGAGCATCGTCGTTCGTGGAGCGAGCCATGATGTATCAGAAGAA
GGTTGAAGCCAAGGTGGCCAGCATGAAGAAGGAGCAGGAGGAGAAGGGGA
AACCTACATTTTCCCCGAAAATCCCAACCCACGTCCCTCCAAAGGGCGCG
CCCGGGGCGATGGCTGCTTCTGATGCCATGCGTCGACAGCTGGCCCGGAA
GGAAAGTGTGTTTGAATATCTGGCCTCCACGCCCACCCACACTCACAACC
ACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTACTGCT
ACTCCTACAGCTGCCGTCAACGCCCCCCATCTGAGCAGCCCCTCCTGTGC
TGTAGCTTCTGATGCCGGCACGCGTCGCTCGCTCTCGCTGGGGGGCAAGG
AAGCCAAGAAATTGTTCGCGCGGTTGCACGCCGACGCCTCCCGCAAAGAG
GAGAAGCTGAAGCAGCATGAGGCAGAACGCATGTTGCTCGAAACCAGGGG
ATGTACATTCGCCCCTCACCTTCCAAGCCCTCTTCCTTCTCGTCCTCCAG
CATCGCCCCATCCTCCCACTGCTGCTGTTGCTACAGATGCTGCTATTACA
TCTTCTCCTCCTTCCTCTTCCTCGTTTCCTACCGCCACCCCCTCAGCCTG
GGCCAGCATGAAGAAGACGCCTGTGGTAGTAGTGACAAGGTCACCGACGC
GGCCGACGACAAAGCATGACAGCAGCAGCAGCAGCAAGAGCAGCAGCAGT
AGCCGTCATGTCTTCACACGCCTGCACGAGCACAAGGTCAAAGCCAGTAC
AGCATCTGCTATTGCTCCCTCGACCTCCTTCTCTTCCTCCCCTTTCAGGG
CCAAGCCGGCTGCTTTCTCCTCCTCCTCCTCCTCCACCCCGACCTCCTCC
TCCCCTTCCTACTCTTCCATCACCGCCGCAGCCACTCTCACAATGAAAAG
CAAGCGTTCCCCCACCCACTCTCGCCTCTCCTCCTCTTCCTCCACCACCA
CCGCCAAGAGAAGGAGCGAGGAAGGCGGCCGGGCCAAGCAATCTCTATCC
GTGGCCTTCCCTACCAGCACAACCCCCTCCCTCCCTACCAGCACAACCCC
CTCCCTCTCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
TGGTGGCGGTAGAGGATGCTGGGAGTGTTTTCGATCGACTTGCACAAGAG
GTGTACGCACGCAAGCTGTGGGAGCAACAGCAGCAGCAGCAGCTGCAAAG
GCAGATGTGTTTGACCATGAAAGATGACGGTGGAGGTAAACGGCCTACTC
TGTGCACTTCTGTCCCTTGCATGCTCCCCTCCTCCTTTTCCTCCCCCTCG
TCATCACCCAACCACCAGCAGCATCCTCTCGCCAAGAGTCCTTCTAGAAA
GGTAATGGAACGAGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAGGGCGA
GTGCGGAGATGGAAGTAGAGGCGACGGAAGAGGAAGCGGAATCGGTAAAA
TCATATTGGAATACAGTGGCCTTCACCCCGATGAAGGACGAAGGGGGGGA
GGGGACCGTGGGCGTGACGAGTAAGAAAGCGGTGCTTGAGGGGTAG
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protein sequence of NO05G00420.1

>NO05G00420.1-protein ID=NO05G00420.1-protein|Name=NO05G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MKRVTRSQAAAAAAAAAAAAEVEAGKAQSTTTQEQLEGPQMQTPPLQKQP
ASSSSTITTIATTEAGVRLYEQAKAMQQRRKSLMKEKPADCTFSPKLVTS
TRRAGKTGGSATNEEEDPLASTTKRFERLYLDAQTRAAKLEGAKMEHEQT
LAAQAPGKPHTIPPPSSKSKTSSSRKPPSSPTSSSPAPLSIPAGVNRLYE
QAKLQRERLAQRVAEVTASECTFKPAILPRSASTRRRRHGEGGTEEGEED
ARRASSFVERAMMYQKKVEAKVASMKKEQEEKGKPTFSPKIPTHVPPKGA
PGAMAASDAMRRQLARKESVFEYLASTPTHTHNHNSSSSSSSSSNSNSTA
TPTAAVNAPHLSSPSCAVASDAGTRRSLSLGGKEAKKLFARLHADASRKE
EKLKQHEAERMLLETRGCTFAPHLPSPLPSRPPASPHPPTAAVATDAAIT
SSPPSSSSFPTATPSAWASMKKTPVVVVTRSPTRPTTKHDSSSSSKSSSS
SRHVFTRLHEHKVKASTASAIAPSTSFSSSPFRAKPAAFSSSSSSTPTSS
SPSYSSITAAATLTMKSKRSPTHSRLSSSSSTTTAKRRSEEGGRAKQSLS
VAFPTSTTPSLPTSTTPSLSPPLPPSLPPFLPPLVAVEDAGSVFDRLAQE
VYARKLWEQQQQQQLQRQMCLTMKDDGGGKRPTLCTSVPCMLPSSFSSPS
SSPNHQQHPLAKSPSRKVMERGGREGGKEGGRASAEMEVEATEEEAESVK
SYWNTVAFTPMKDEGGEGTVGVTSKKAVLEG*
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Synonyms
Publications