NO05G00420.1, NO05G00420.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00420.1
Unique Name	NO05G00420.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2346
Alignment location	chr5:158550..160895 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:158550..160895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G00420.1 vs.
Match: EWM28340.1 (hypothetical protein Naga_100367g2 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 5.200e-12
Identity = 53/132 (40.15%), Postives = 81/132 (61.36%), Query Frame = 0

Query:  168 KSKTSSSRKPPSSPTSSSPAPLSIPAGVNRLYEQAKLQRERLAQRVAEVTASECTFKPAILPRSASTRRRRHGEGGTEEGEEDARRASSFVERAMMYQKKVEAKVASMKKEQEEKGKPTFSPKIPTHVPPKG 300
            +S+++    PP  P +  PA  S+P+  NRLY +A  QRERLA+R+A+    ECTF P ++ R+AST R R G+  +E           FV+RA  YQ+ VE+K+++++KEQ  + +P+F P +P H   KG
Sbjct:    6 RSRSTGPDTPPHVPPTP-PASSSLPS--NRLYAEAARQRERLARRIADTRVPECTFHPTLVSRAASTSRTRPGDRASE---------IPFVDRAQSYQRHVESKLSALRKEQAAQEQPSFRPTLPVHTGKKG 125

The following BLAST results are available for this feature:

BLAST of NO05G00420.1 vs.

BLAST of NO05G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28340.1	5.200e-12	40.15	hypothetical protein Naga_100367g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00420	NO05G00420	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00420.1	NO05G00420.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00420.1.cds1	NO05G00420.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:158550..160895+
coding sequence from alignment at chr5:158550..160895+

mRNA sequence

>NO05G00420.1 ID=NO05G00420.1|Name=NO05G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp
ATGAAACGTGTAACCCGCTCACAAGCAGCGGCGGCGGCCGCCGCTGCAGC
TGCTGCCGCCGAGGTTGAGGCAGGCAAGGCTCAGTCCACTACCACGCAAG
AACAACTTGAGGGGCCGCAAATGCAGACGCCGCCCCTGCAAAAGCAGCCG
GCATCTTCCTCCTCCACTATTACGACTATCGCCACCACTGAGGCCGGCGT
CCGTCTGTACGAACAAGCCAAGGCCATGCAACAACGCCGGAAGAGCCTTA
TGAAGGAGAAGCCAGCGGACTGCACGTTCAGTCCGAAGCTCGTCACGTCT
ACCAGACGAGCCGGGAAGACAGGTGGCAGCGCAACAAACGAGGAGGAAGA
CCCCCTCGCCAGCACCACCAAGCGTTTCGAACGTCTTTACCTCGATGCAC
AGACCCGCGCGGCAAAGCTTGAAGGGGCAAAGATGGAGCATGAACAAACA
TTGGCAGCGCAAGCCCCCGGCAAACCGCACACCATCCCTCCTCCCTCCTC
CAAGAGCAAGACCAGCAGCAGCAGAAAGCCTCCCTCCTCCCCCACCTCCT
CCTCCCCCGCCCCCTTATCTATTCCGGCAGGTGTCAATCGCCTCTACGAG
CAAGCCAAGCTCCAACGCGAGCGACTAGCCCAGCGGGTCGCCGAAGTCAC
CGCTAGTGAATGCACCTTCAAGCCTGCCATCCTACCTCGCTCGGCCTCCA
CTCGCAGAAGGCGACATGGGGAAGGCGGGACAGAGGAAGGGGAGGAGGAT
GCAAGGAGAGCATCGTCGTTCGTGGAGCGAGCCATGATGTATCAGAAGAA
GGTTGAAGCCAAGGTGGCCAGCATGAAGAAGGAGCAGGAGGAGAAGGGGA
AACCTACATTTTCCCCGAAAATCCCAACCCACGTCCCTCCAAAGGGCGCG
CCCGGGGCGATGGCTGCTTCTGATGCCATGCGTCGACAGCTGGCCCGGAA
GGAAAGTGTGTTTGAATATCTGGCCTCCACGCCCACCCACACTCACAACC
ACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTACTGCT
ACTCCTACAGCTGCCGTCAACGCCCCCCATCTGAGCAGCCCCTCCTGTGC
TGTAGCTTCTGATGCCGGCACGCGTCGCTCGCTCTCGCTGGGGGGCAAGG
AAGCCAAGAAATTGTTCGCGCGGTTGCACGCCGACGCCTCCCGCAAAGAG
GAGAAGCTGAAGCAGCATGAGGCAGAACGCATGTTGCTCGAAACCAGGGG
ATGTACATTCGCCCCTCACCTTCCAAGCCCTCTTCCTTCTCGTCCTCCAG
CATCGCCCCATCCTCCCACTGCTGCTGTTGCTACAGATGCTGCTATTACA
TCTTCTCCTCCTTCCTCTTCCTCGTTTCCTACCGCCACCCCCTCAGCCTG
GGCCAGCATGAAGAAGACGCCTGTGGTAGTAGTGACAAGGTCACCGACGC
GGCCGACGACAAAGCATGACAGCAGCAGCAGCAGCAAGAGCAGCAGCAGT
AGCCGTCATGTCTTCACACGCCTGCACGAGCACAAGGTCAAAGCCAGTAC
AGCATCTGCTATTGCTCCCTCGACCTCCTTCTCTTCCTCCCCTTTCAGGG
CCAAGCCGGCTGCTTTCTCCTCCTCCTCCTCCTCCACCCCGACCTCCTCC
TCCCCTTCCTACTCTTCCATCACCGCCGCAGCCACTCTCACAATGAAAAG
CAAGCGTTCCCCCACCCACTCTCGCCTCTCCTCCTCTTCCTCCACCACCA
CCGCCAAGAGAAGGAGCGAGGAAGGCGGCCGGGCCAAGCAATCTCTATCC
GTGGCCTTCCCTACCAGCACAACCCCCTCCCTCCCTACCAGCACAACCCC
CTCCCTCTCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
TGGTGGCGGTAGAGGATGCTGGGAGTGTTTTCGATCGACTTGCACAAGAG
GTGTACGCACGCAAGCTGTGGGAGCAACAGCAGCAGCAGCAGCTGCAAAG
GCAGATGTGTTTGACCATGAAAGATGACGGTGGAGGTAAACGGCCTACTC
TGTGCACTTCTGTCCCTTGCATGCTCCCCTCCTCCTTTTCCTCCCCCTCG
TCATCACCCAACCACCAGCAGCATCCTCTCGCCAAGAGTCCTTCTAGAAA
GGTAATGGAACGAGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAGGGCGA
GTGCGGAGATGGAAGTAGAGGCGACGGAAGAGGAAGCGGAATCGGTAAAA
TCATATTGGAATACAGTGGCCTTCACCCCGATGAAGGACGAAGGGGGGGA
GGGGACCGTGGGCGTGACGAGTAAGAAAGCGGTGCTTGAGGGGTAG

protein sequence of NO05G00420.1

>NO05G00420.1-protein ID=NO05G00420.1-protein|Name=NO05G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MKRVTRSQAAAAAAAAAAAAEVEAGKAQSTTTQEQLEGPQMQTPPLQKQP
ASSSSTITTIATTEAGVRLYEQAKAMQQRRKSLMKEKPADCTFSPKLVTS
TRRAGKTGGSATNEEEDPLASTTKRFERLYLDAQTRAAKLEGAKMEHEQT
LAAQAPGKPHTIPPPSSKSKTSSSRKPPSSPTSSSPAPLSIPAGVNRLYE
QAKLQRERLAQRVAEVTASECTFKPAILPRSASTRRRRHGEGGTEEGEED
ARRASSFVERAMMYQKKVEAKVASMKKEQEEKGKPTFSPKIPTHVPPKGA
PGAMAASDAMRRQLARKESVFEYLASTPTHTHNHNSSSSSSSSSNSNSTA
TPTAAVNAPHLSSPSCAVASDAGTRRSLSLGGKEAKKLFARLHADASRKE
EKLKQHEAERMLLETRGCTFAPHLPSPLPSRPPASPHPPTAAVATDAAIT
SSPPSSSSFPTATPSAWASMKKTPVVVVTRSPTRPTTKHDSSSSSKSSSS
SRHVFTRLHEHKVKASTASAIAPSTSFSSSPFRAKPAAFSSSSSSTPTSS
SPSYSSITAAATLTMKSKRSPTHSRLSSSSSTTTAKRRSEEGGRAKQSLS
VAFPTSTTPSLPTSTTPSLSPPLPPSLPPFLPPLVAVEDAGSVFDRLAQE
VYARKLWEQQQQQQLQRQMCLTMKDDGGGKRPTLCTSVPCMLPSSFSSPS
SSPNHQQHPLAKSPSRKVMERGGREGGKEGGRASAEMEVEATEEEAESVK
SYWNTVAFTPMKDEGGEGTVGVTSKKAVLEG*

mRNA from alignment at chr5:158550..160895+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00420.1 ID=NO05G00420.1|Name=NO05G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp|location=Sequence derived from alignment at chr5:158550..160895+ (Nannochloropsis oceanica)
ATGAAACGTGTAACCCGCTCACAAGCAGCGGCGGCGGCCGCCGCTGCAGC
TGCTGCCGCCGAGGTTGAGGCAGGCAAGGCTCAGTCCACTACCACGCAAG
AACAACTTGAGGGGCCGCAAATGCAGACGCCGCCCCTGCAAAAGCAGCCG
GCATCTTCCTCCTCCACTATTACGACTATCGCCACCACTGAGGCCGGCGT
CCGTCTGTACGAACAAGCCAAGGCCATGCAACAACGCCGGAAGAGCCTTA
TGAAGGAGAAGCCAGCGGACTGCACGTTCAGTCCGAAGCTCGTCACGTCT
ACCAGACGAGCCGGGAAGACAGGTGGCAGCGCAACAAACGAGGAGGAAGA
CCCCCTCGCCAGCACCACCAAGCGTTTCGAACGTCTTTACCTCGATGCAC
AGACCCGCGCGGCAAAGCTTGAAGGGGCAAAGATGGAGCATGAACAAACA
TTGGCAGCGCAAGCCCCCGGCAAACCGCACACCATCCCTCCTCCCTCCTC
CAAGAGCAAGACCAGCAGCAGCAGAAAGCCTCCCTCCTCCCCCACCTCCT
CCTCCCCCGCCCCCTTATCTATTCCGGCAGGTGTCAATCGCCTCTACGAG
CAAGCCAAGCTCCAACGCGAGCGACTAGCCCAGCGGGTCGCCGAAGTCAC
CGCTAGTGAATGCACCTTCAAGCCTGCCATCCTACCTCGCTCGGCCTCCA
CTCGCAGAAGGCGACATGGGGAAGGCGGGACAGAGGAAGGGGAGGAGGAT
GCAAGGAGAGCATCGTCGTTCGTGGAGCGAGCCATGATGTATCAGAAGAA
GGTTGAAGCCAAGGTGGCCAGCATGAAGAAGGAGCAGGAGGAGAAGGGGA
AACCTACATTTTCCCCGAAAATCCCAACCCACGTCCCTCCAAAGGGCGCG
CCCGGGGCGATGGCTGCTTCTGATGCCATGCGTCGACAGCTGGCCCGGAA
GGAAAGTGTGTTTGAATATCTGGCCTCCACGCCCACCCACACTCACAACC
ACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTACTGCT
ACTCCTACAGCTGCCGTCAACGCCCCCCATCTGAGCAGCCCCTCCTGTGC
TGTAGCTTCTGATGCCGGCACGCGTCGCTCGCTCTCGCTGGGGGGCAAGG
AAGCCAAGAAATTGTTCGCGCGGTTGCACGCCGACGCCTCCCGCAAAGAG
GAGAAGCTGAAGCAGCATGAGGCAGAACGCATGTTGCTCGAAACCAGGGG
ATGTACATTCGCCCCTCACCTTCCAAGCCCTCTTCCTTCTCGTCCTCCAG
CATCGCCCCATCCTCCCACTGCTGCTGTTGCTACAGATGCTGCTATTACA
TCTTCTCCTCCTTCCTCTTCCTCGTTTCCTACCGCCACCCCCTCAGCCTG
GGCCAGCATGAAGAAGACGCCTGTGGTAGTAGTGACAAGGTCACCGACGC
GGCCGACGACAAAGCATGACAGCAGCAGCAGCAGCAAGAGCAGCAGCAGT
AGCCGTCATGTCTTCACACGCCTGCACGAGCACAAGGTCAAAGCCAGTAC
AGCATCTGCTATTGCTCCCTCGACCTCCTTCTCTTCCTCCCCTTTCAGGG
CCAAGCCGGCTGCTTTCTCCTCCTCCTCCTCCTCCACCCCGACCTCCTCC
TCCCCTTCCTACTCTTCCATCACCGCCGCAGCCACTCTCACAATGAAAAG
CAAGCGTTCCCCCACCCACTCTCGCCTCTCCTCCTCTTCCTCCACCACCA
CCGCCAAGAGAAGGAGCGAGGAAGGCGGCCGGGCCAAGCAATCTCTATCC
GTGGCCTTCCCTACCAGCACAACCCCCTCCCTCCCTACCAGCACAACCCC
CTCCCTCTCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
TGGTGGCGGTAGAGGATGCTGGGAGTGTTTTCGATCGACTTGCACAAGAG
GTGTACGCACGCAAGCTGTGGGAGCAACAGCAGCAGCAGCAGCTGCAAAG
GCAGATGTGTTTGACCATGAAAGATGACGGTGGAGGTAAACGGCCTACTC
TGTGCACTTCTGTCCCTTGCATGCTCCCCTCCTCCTTTTCCTCCCCCTCG
TCATCACCCAACCACCAGCAGCATCCTCTCGCCAAGAGTCCTTCTAGAAA
GGTAATGGAACGAGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAGGGCGA
GTGCGGAGATGGAAGTAGAGGCGACGGAAGAGGAAGCGGAATCGGTAAAA
TCATATTGGAATACAGTGGCCTTCACCCCGATGAAGGACGAAGGGGGGGA
GGGGACCGTGGGCGTGACGAGTAAGAAAGCGGTGCTTGAGGGGTAG

Coding sequence (CDS) from alignment at chr5:158550..160895+

>NO05G00420.1 ID=NO05G00420.1|Name=NO05G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at chr5:158550..160895+ (Nannochloropsis oceanica)
ATGAAACGTGTAACCCGCTCACAAGCAGCGGCGGCGGCCGCCGCTGCAGC
TGCTGCCGCCGAGGTTGAGGCAGGCAAGGCTCAGTCCACTACCACGCAAG
AACAACTTGAGGGGCCGCAAATGCAGACGCCGCCCCTGCAAAAGCAGCCG
GCATCTTCCTCCTCCACTATTACGACTATCGCCACCACTGAGGCCGGCGT
CCGTCTGTACGAACAAGCCAAGGCCATGCAACAACGCCGGAAGAGCCTTA
TGAAGGAGAAGCCAGCGGACTGCACGTTCAGTCCGAAGCTCGTCACGTCT
ACCAGACGAGCCGGGAAGACAGGTGGCAGCGCAACAAACGAGGAGGAAGA
CCCCCTCGCCAGCACCACCAAGCGTTTCGAACGTCTTTACCTCGATGCAC
AGACCCGCGCGGCAAAGCTTGAAGGGGCAAAGATGGAGCATGAACAAACA
TTGGCAGCGCAAGCCCCCGGCAAACCGCACACCATCCCTCCTCCCTCCTC
CAAGAGCAAGACCAGCAGCAGCAGAAAGCCTCCCTCCTCCCCCACCTCCT
CCTCCCCCGCCCCCTTATCTATTCCGGCAGGTGTCAATCGCCTCTACGAG
CAAGCCAAGCTCCAACGCGAGCGACTAGCCCAGCGGGTCGCCGAAGTCAC
CGCTAGTGAATGCACCTTCAAGCCTGCCATCCTACCTCGCTCGGCCTCCA
CTCGCAGAAGGCGACATGGGGAAGGCGGGACAGAGGAAGGGGAGGAGGAT
GCAAGGAGAGCATCGTCGTTCGTGGAGCGAGCCATGATGTATCAGAAGAA
GGTTGAAGCCAAGGTGGCCAGCATGAAGAAGGAGCAGGAGGAGAAGGGGA
AACCTACATTTTCCCCGAAAATCCCAACCCACGTCCCTCCAAAGGGCGCG
CCCGGGGCGATGGCTGCTTCTGATGCCATGCGTCGACAGCTGGCCCGGAA
GGAAAGTGTGTTTGAATATCTGGCCTCCACGCCCACCCACACTCACAACC
ACAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGTACTGCT
ACTCCTACAGCTGCCGTCAACGCCCCCCATCTGAGCAGCCCCTCCTGTGC
TGTAGCTTCTGATGCCGGCACGCGTCGCTCGCTCTCGCTGGGGGGCAAGG
AAGCCAAGAAATTGTTCGCGCGGTTGCACGCCGACGCCTCCCGCAAAGAG
GAGAAGCTGAAGCAGCATGAGGCAGAACGCATGTTGCTCGAAACCAGGGG
ATGTACATTCGCCCCTCACCTTCCAAGCCCTCTTCCTTCTCGTCCTCCAG
CATCGCCCCATCCTCCCACTGCTGCTGTTGCTACAGATGCTGCTATTACA
TCTTCTCCTCCTTCCTCTTCCTCGTTTCCTACCGCCACCCCCTCAGCCTG
GGCCAGCATGAAGAAGACGCCTGTGGTAGTAGTGACAAGGTCACCGACGC
GGCCGACGACAAAGCATGACAGCAGCAGCAGCAGCAAGAGCAGCAGCAGT
AGCCGTCATGTCTTCACACGCCTGCACGAGCACAAGGTCAAAGCCAGTAC
AGCATCTGCTATTGCTCCCTCGACCTCCTTCTCTTCCTCCCCTTTCAGGG
CCAAGCCGGCTGCTTTCTCCTCCTCCTCCTCCTCCACCCCGACCTCCTCC
TCCCCTTCCTACTCTTCCATCACCGCCGCAGCCACTCTCACAATGAAAAG
CAAGCGTTCCCCCACCCACTCTCGCCTCTCCTCCTCTTCCTCCACCACCA
CCGCCAAGAGAAGGAGCGAGGAAGGCGGCCGGGCCAAGCAATCTCTATCC
GTGGCCTTCCCTACCAGCACAACCCCCTCCCTCCCTACCAGCACAACCCC
CTCCCTCTCTCCTCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
TGGTGGCGGTAGAGGATGCTGGGAGTGTTTTCGATCGACTTGCACAAGAG
GTGTACGCACGCAAGCTGTGGGAGCAACAGCAGCAGCAGCAGCTGCAAAG
GCAGATGTGTTTGACCATGAAAGATGACGGTGGAGGTAAACGGCCTACTC
TGTGCACTTCTGTCCCTTGCATGCTCCCCTCCTCCTTTTCCTCCCCCTCG
TCATCACCCAACCACCAGCAGCATCCTCTCGCCAAGAGTCCTTCTAGAAA
GGTAATGGAACGAGGAGGGAGGGAGGGTGGGAAGGAGGGAGGGAGGGCGA
GTGCGGAGATGGAAGTAGAGGCGACGGAAGAGGAAGCGGAATCGGTAAAA
TCATATTGGAATACAGTGGCCTTCACCCCGATGAAGGACGAAGGGGGGGA
GGGGACCGTGGGCGTGACGAGTAAGAAAGCGGTGCTTGAGGGGTAG

Synonyms

Publications