NO05G00400, NO05G00400 (gene) Nannochloropsis oceanica

Overview
NameNO05G00400
Unique NameNO05G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr5:152976..154445 -

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Properties
Property NameValue
DescriptionUPF0161 protein At3g09310
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:152976..154445 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002696Membr_insert_effic_factor
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO05G00400 vs. NCBI_GenBank
Match: EWM28345.1 (uncharacterized protein Naga_100846g4 [Nannochloropsis gaditana])

HSP 1 Score: 139.0 bits (349), Expect = 3.200e-29
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 0
Query:  328 DLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPPPGWFAGGTGR 412
            D S++ LINF  GYK++ISPLLP+ACRFFPTCSEYAIES+Q FG AKG +LT WRLLRCNPLGGRGWDPPQ       AGGTGR
Sbjct:  160 DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQXXXXXXKAGGTGR 243          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: CBN78651.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 8.500e-22
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 0
Query:  334 LINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPPPGWFAG 408
            +I+F+  YK+ +SPL+P ACRF PTCS Y +++I+ FG  KG +LT WRL+RCNP  G G D PQWPPPGWFAG
Sbjct:   79 MISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 152          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_002286841.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96482.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 112.5 bits (280), Expect = 3.200e-21
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 0
Query:  331 ASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPPPGWFAG 408
            +S +IN +  YKQ+ISPLLP ACRF PTCS+Y +++I+ FG +KG++LT WRL RC+P GGRG+DPP+WPP  +  G
Sbjct:    2 SSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYG 78          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: OEU20797.1 (DUF37-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 111.3 bits (277), Expect = 7.200e-21
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 0
Query:  328 DLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPP 402
            D+S++ +I  +  YK FISPLLP ACRF PTCS+Y +++I+ +G+ KG++LT WRLLRC+P GG+G+DPP+WPP
Sbjct:   48 DVSSAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_002176802.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51265.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 108.2 bits (269), Expect = 6.100e-20
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 0
Query:  334 LINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPP 402
            +I  +  YKQ ISPLLP ACRF PTCS+Y +++IQ +G+ KG ILT WRLLRC+P+GG+G+DPP+WPP
Sbjct:    5 MIASIGFYKQVISPLLPPACRFVPTCSQYGVQAIQQYGSGKGAILTAWRLLRCSPIGGKGYDPPKWPP 72          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_015697503.1 (PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >XP_015697505.1 PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >XP_015697506.1 PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha])

HSP 1 Score: 105.5 bits (262), Expect = 3.900e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  324 EEKPDLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQW 400
            EE  DL  +  ++ L  YK+ ISPLLP +CR+ PTCSEY++++ + +G AKG ILT WRL RCNPLGG G+DPP+W
Sbjct:   96 EEVSDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 171          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_015697507.1 (PREDICTED: uncharacterized protein LOC102703627 isoform X2 [Oryza brachyantha])

HSP 1 Score: 105.5 bits (262), Expect = 3.900e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  324 EEKPDLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQW 400
            EE  DL  +  ++ L  YK+ ISPLLP +CR+ PTCSEY++++ + +G AKG ILT WRL RCNPLGG G+DPP+W
Sbjct:   95 EEVSDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 170          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_015697508.1 (PREDICTED: uncharacterized protein LOC102703627 isoform X3 [Oryza brachyantha])

HSP 1 Score: 105.5 bits (262), Expect = 3.900e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  324 EEKPDLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQW 400
            EE  DL  +  ++ L  YK+ ISPLLP +CR+ PTCSEY++++ + +G AKG ILT WRL RCNPLGG G+DPP+W
Sbjct:   93 EEVSDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 168          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_003577203.1 (UPF0161 protein At3g09310 isoform X1 [Brachypodium distachyon] >KQJ87068.1 hypothetical protein BRADI_4g09240v3 [Brachypodium distachyon] >KQJ87069.1 hypothetical protein BRADI_4g09240v3 [Brachypodium distachyon] >KQJ87076.1 hypothetical protein BRADI_4g09240v3 [Brachypodium distachyon] >PNT62886.1 hypothetical protein BRADI_4g09240v3 [Brachypodium distachyon])

HSP 1 Score: 105.1 bits (261), Expect = 5.100e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  324 EEKPDLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQW 400
            EE  DL  +  ++ L  YK+ ISPLLP +CR+ PTCSEY++ + + +G AKG ILT WRL RCNPLGG+G+DPP+W
Sbjct:   48 EEVDDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMHAYKRYGVAKGTILTAWRLCRCNPLGGQGYDPPRW 123          
BLAST of NO05G00400 vs. NCBI_GenBank
Match: XP_005819557.1 (hypothetical protein GUITHDRAFT_158971 [Guillardia theta CCMP2712] >EKX32577.1 hypothetical protein GUITHDRAFT_158971 [Guillardia theta CCMP2712])

HSP 1 Score: 105.1 bits (261), Expect = 5.100e-19
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 0
Query:  338 LSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPL----GGRGWDPPQWPP 402
            L+ YK FISPLLP ACRF PTCSEY++++I   G +KG++LT WRL+RCNP+    GGRG+DPP+WPP
Sbjct:    9 LNSYKAFISPLLPPACRFLPTCSEYSMQAISELGPSKGLVLTAWRLIRCNPMHWGGGGRGYDPPRWPP 76          
The following BLAST results are available for this feature:
BLAST of NO05G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28345.13.200e-2973.81uncharacterized protein Naga_100846g4 [Nannochloro... [more]
CBN78651.18.500e-2260.81conserved unknown protein [Ectocarpus siliculosus][more]
XP_002286841.13.200e-2158.44predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU20797.17.200e-2158.11DUF37-domain-containing protein [Fragilariopsis cy... [more]
XP_002176802.16.100e-2063.24predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_015697503.13.900e-1956.58PREDICTED: uncharacterized protein LOC102703627 is... [more]
XP_015697507.13.900e-1956.58PREDICTED: uncharacterized protein LOC102703627 is... [more]
XP_015697508.13.900e-1956.58PREDICTED: uncharacterized protein LOC102703627 is... [more]
XP_003577203.15.100e-1956.58UPF0161 protein At3g09310 isoform X1 [Brachypodium... [more]
XP_005819557.15.100e-1963.24hypothetical protein GUITHDRAFT_158971 [Guillardia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003848NSK003848Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00400.1NO05G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583495gene_2832Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100846g4gene2230Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00400.1NO05G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00400 ID=NO05G00400|Name=NO05G00400|organism=Nannochloropsis oceanica|type=gene|length=1470bp
CGAGAAATGAATTTGGAACACAATTCGGGCTGCAAATCACGTCTCAAAGT
TGAATATGTTGGGATTGAGACCAGGAATGGGATTTGGGACGTTGTTCATC
GCCCTCTGTCATGACGTCACGCTGTAGACCTCGAATGCATTTAACTCACC
ATCAGCAGAAGCTCATTTAACGCTAAGTCTCACAACGCCTCCCTTCCACA
GCAATGTGCAACACCATGACGGACAAGGCCCCAAAAAAGAAAAGGCACCA
GCAGAGTCCGTTCATGTGTCAAGGCGAAGTAAATGAAGTGATGCGTGCTT
TTGCAGAGGACTGGGGTCATGAGACCATTGTCCGCGCACTGGCCACCAAG
GCCCAGGAGGCAGGTCCTAGCGTATTAAAGGTGGATCGTGTGAAGAACCA
GCTGGTGCAGCGCGCCCGGGATGTCATTCGCGATGCTAGTTTATACGTAT
ATAGTGGCCTCTTCGACAAGAGAATCGAAATGCGAGTCCATACTAAGCCC
CACTATTATGAACGAGACGGGCGGATAGTGATATGCATGTATCGTACCAG
AAGAAGAAGGGCACGTGGTGCGAGAACACCACCACCATTTAAACCCATGG
AGAGACCACCAGCGAAGGAGGACGGGGGAGGACAGGGGCAATGCCCCTTC
AGCCCAACCAATAAACCAGCTTCCAATCTCATTATTATTCACTGCTTCTT
CGCTGTCTGCCTCCTCGTCCTCGTCGCTTTTATCCGCCTACCCACCGCCC
ATGCTTTTCATCATGGCCCTTCCTTCCCGCCTCCATTCCCGTCCTCTTTC
TCCTCCGGCTTCCGTCCTCGCGCCCTTTCTCCCTCCCTCCCTCCCTCCTT
CTGCCAATCCTGCTTGGACAACAACGAAAAGATCGTCAACTTTCTCATGA
ATCATCAGAGAGCTAACCGCAAGATCAAGAACATGAGAATACAGCAGCAG
CGGCACCAGCAGCAGTGGGAAACGAGCAAGAGAAGGCCCAGCTACCTCGG
AGATCTTCATTCGCCTGCCCTTACCCTTCCCTTTCCTCTTTCTCCCTTGT
ATCTCGCCTCTGTCACCGACAACTTAGACAACGACAACTTAGACAACTTC
AACAACAACAACAACAACGACAGCGATGGCAATGGTGAGGACGAGGACGA
GGATATAAACGAAGGCACGGGGGAGGAGAAACCAGACTTGAGCGCCTCCT
TCCTCATCAACTTCCTCAGTGGTTACAAGCAATTCATCTCCCCCCTCCTC
CCCAAGGCCTGTCGGTTCTTTCCCACATGCAGCGAATACGCCATCGAATC
AATTCAGACCTTTGGAGCGGCCAAAGGGATTATCCTGACCGTATGGCGGC
TCCTGCGATGCAATCCGCTCGGAGGGAGGGGATGGGACCCCCCACAGTGG
CCGCCGCCCGGGTGGTTCGCGGGGGGAACGGGGAGATAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGA
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protein sequence of NO05G00400.1

>NO05G00400.1-protein ID=NO05G00400.1-protein|Name=NO05G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MCNTMTDKAPKKKRHQQSPFMCQGEVNEVMRAFAEDWGHETIVRALATKA
QEAGPSVLKVDRVKNQLVQRARDVIRDASLYVYSGLFDKRIEMRVHTKPH
YYERDGRIVICMYRTRRRRARGARTPPPFKPMERPPAKEDGGGQGQCPFS
PTNKPASNLIIIHCFFAVCLLVLVAFIRLPTAHAFHHGPSFPPPFPSSFS
SGFRPRALSPSLPPSFCQSCLDNNEKIVNFLMNHQRANRKIKNMRIQQQR
HQQQWETSKRRPSYLGDLHSPALTLPFPLSPLYLASVTDNLDNDNLDNFN
NNNNNDSDGNGEDEDEDINEGTGEEKPDLSASFLINFLSGYKQFISPLLP
KACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWP
PPGWFAGGTGR*
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Synonyms
Publications