NO05G00400.1, NO05G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00400.1
Unique NameNO05G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr5:152976..154445 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:152976..154445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00400.1 vs.
Match: EWM28345.1 (uncharacterized protein Naga_100846g4 [Nannochloropsis gaditana])

HSP 1 Score: 142.1 bits (357), Expect = 3.800e-30
Identity = 104/258 (40.31%), Postives = 133/258 (51.55%), Query Frame = 0 
Query:  160 IIIHCFFAVCLLVLV----AFIRLPTAHAFHHGPSFPPPFPSSFSSGFRPRALSPS--LPPSFCQSCLDNNEKIVNFLMNHQRANRKIKNMRIQQQRHQQQWETSKRRPSYLGDLHSPALTLPFPLSPLYLASVTDNLDNDNLDNFNNNNNNDSDGNGEDEDEDINEGTGEEKPDLSASFLINFLSGYKQFISPLLPKACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWPPPGWFAGGTGR 412
            I+ H F +  L++L      F+++P      H PS     P        P  L PS  L P+FCQ+C   +        NH+   RK +   +     +     +            P L    P  P        + D D  D   + +  ++     DE E++   T     D S++ LINF  GYK++ISPLLP+ACRFFPTCSEYAIES+Q FG AKG +LT WRLLRCNPLGGRGWDPPQWPPPGW AGGTGR
Sbjct:   29 ILCHLFISFFLVLLPFMVQGFLQVP------HQPSMAQAGP--------PHPLGPSRALSPAFCQACFHEH--------NHKDGGRKTRRPGMPVLHFRGSCGCNAAL--------QPVLNALGPYFP--------HTDEDTPDREGSLDVPEAVDESFDEVEEVLAPT-----DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR 243
The following BLAST results are available for this feature:
BLAST of NO05G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28345.13.800e-3040.31uncharacterized protein Naga_100846g4 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00400NO05G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00400.1NO05G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00400.1.cds1NO05G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00400.1 ID=NO05G00400.1|Name=NO05G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
CGAGAAATGAATTTGGAACACAATTCGGGCTGCAAATCACGTCTCAAAGT
TGAATATGTTGGGATTGAGACCAGGAATGGGATTTGGGACGTTGTTCATC
GCCCTCTGTCATGACGTCACGCTGTAGACCTCGAATGCATTTAACTCACC
ATCAGCAGAAGCTCATTTAACGCTAAGTCTCACAACGCCTCCCTTCCACA
GCAATGTGCAACACCATGACGGACAAGGCCCCAAAAAAGAAAAGGCACCA
GCAGAGTCCGTTCATGTGTCAAGGCGAAGTAAATGAAGTGATGCGTGCTT
TTGCAGAGGACTGGGGTCATGAGACCATTGTCCGCGCACTGGCCACCAAG
GCCCAGGAGGCAGGTCCTAGCGTATTAAAGGTGGATCGTGTGAAGAACCA
GCTGGTGCAGCGCGCCCGGGATGTCATTCGCGATGCTAGTTTATACGTAT
ATAGTGGCCTCTTCGACAAGAGAATCGAAATGCGAGTCCATACTAAGCCC
CACTATTATGAACGAGACGGGCGGATAGTGATATGCATGTATCGTACCAG
AAGAAGAAGGGCACGTGGTGCGAGAACACCACCACCATTTAAACCCATGG
AGAGACCACCAGCGAAGGAGGACGGGGGAGGACAGGGGCAATGCCCCTTC
AGCCCAACCAATAAACCAGCTTCCAATCTCATTATTATTCACTGCTTCTT
CGCTGTCTGCCTCCTCGTCCTCGTCGCTTTTATCCGCCTACCCACCGCCC
ATGCTTTTCATCATGGCCCTTCCTTCCCGCCTCCATTCCCGTCCTCTTTC
TCCTCCGGCTTCCGTCCTCGCGCCCTTTCTCCCTCCCTCCCTCCCTCCTT
CTGCCAATCCTGCTTGGACAACAACGAAAAGATCGTCAACTTTCTCATGA
ATCATCAGAGAGCTAACCGCAAGATCAAGAACATGAGAATACAGCAGCAG
CGGCACCAGCAGCAGTGGGAAACGAGCAAGAGAAGGCCCAGCTACCTCGG
AGATCTTCATTCGCCTGCCCTTACCCTTCCCTTTCCTCTTTCTCCCTTGT
ATCTCGCCTCTGTCACCGACAACTTAGACAACGACAACTTAGACAACTTC
AACAACAACAACAACAACGACAGCGATGGCAATGGTGAGGACGAGGACGA
GGATATAAACGAAGGCACGGGGGAGGAGAAACCAGACTTGAGCGCCTCCT
TCCTCATCAACTTCCTCAGTGGTTACAAGCAATTCATCTCCCCCCTCCTC
CCCAAGGCCTGTCGGTTCTTTCCCACATGCAGCGAATACGCCATCGAATC
AATTCAGACCTTTGGAGCGGCCAAAGGGATTATCCTGACCGTATGGCGGC
TCCTGCGATGCAATCCGCTCGGAGGGAGGGGATGGGACCCCCCACAGTGG
CCGCCGCCCGGGTGGTTCGCGGGGGGAACGGGGAGATAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGA
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protein sequence of NO05G00400.1

>NO05G00400.1-protein ID=NO05G00400.1-protein|Name=NO05G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MCNTMTDKAPKKKRHQQSPFMCQGEVNEVMRAFAEDWGHETIVRALATKA
QEAGPSVLKVDRVKNQLVQRARDVIRDASLYVYSGLFDKRIEMRVHTKPH
YYERDGRIVICMYRTRRRRARGARTPPPFKPMERPPAKEDGGGQGQCPFS
PTNKPASNLIIIHCFFAVCLLVLVAFIRLPTAHAFHHGPSFPPPFPSSFS
SGFRPRALSPSLPPSFCQSCLDNNEKIVNFLMNHQRANRKIKNMRIQQQR
HQQQWETSKRRPSYLGDLHSPALTLPFPLSPLYLASVTDNLDNDNLDNFN
NNNNNDSDGNGEDEDEDINEGTGEEKPDLSASFLINFLSGYKQFISPLLP
KACRFFPTCSEYAIESIQTFGAAKGIILTVWRLLRCNPLGGRGWDPPQWP
PPGWFAGGTGR*
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mRNA from alignment at chr5:152976..154445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00400.1 ID=NO05G00400.1|Name=NO05G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr5:152976..154445- (Nannochloropsis oceanica)
CGAGAAATGAATTTGGAACACAATTCGGGCTGCAAATCACGTCTCAAAGT
TGAATATGTTGGGATTGAGACCAGGAATGGGATTTGGGACGTTGTTCATC
GCCCTCTGTCATGACGTCACGCTGTAGACCTCGAATGCATTTAACTCACC
ATCAGCAGAAGCTCATTTAACGCTAAGTCTCACAACGCCTCCCTTCCACA
GCAATGTGCAACACCATGACGGACAAGGCCCCAAAAAAGAAAAGGCACCA
GCAGAGTCCGTTCATGTGTCAAGGCGAAGTAAATGAAGTGATGCGTGCTT
TTGCAGAGGACTGGGGTCATGAGACCATTGTCCGCGCACTGGCCACCAAG
GCCCAGGAGGCAGGTCCTAGCGTATTAAAGGTGGATCGTGTGAAGAACCA
GCTGGTGCAGCGCGCCCGGGATGTCATTCGCGATGCTAGTTTATACGTAT
ATAGTGGCCTCTTCGACAAGAGAATCGAAATGCGAGTCCATACTAAGCCC
CACTATTATGAACGAGACGGGCGGATAGTGATATGCATGTATCGTACCAG
AAGAAGAAGGGCACGTGGTGCGAGAACACCACCACCATTTAAACCCATGG
AGAGACCACCAGCGAAGGAGGACGGGGGAGGACAGGGGCAATGCCCCTTC
AGCCCAACCAATAAACCAGCTTCCAATCTCATTATTATTCACTGCTTCTT
CGCTGTCTGCCTCCTCGTCCTCGTCGCTTTTATCCGCCTACCCACCGCCC
ATGCTTTTCATCATGGCCCTTCCTTCCCGCCTCCATTCCCGTCCTCTTTC
TCCTCCGGCTTCCGTCCTCGCGCCCTTTCTCCCTCCCTCCCTCCCTCCTT
CTGCCAATCCTGCTTGGACAACAACGAAAAGATCGTCAACTTTCTCATGA
ATCATCAGAGAGCTAACCGCAAGATCAAGAACATGAGAATACAGCAGCAG
CGGCACCAGCAGCAGTGGGAAACGAGCAAGAGAAGGCCCAGCTACCTCGG
AGATCTTCATTCGCCTGCCCTTACCCTTCCCTTTCCTCTTTCTCCCTTGT
ATCTCGCCTCTGTCACCGACAACTTAGACAACGACAACTTAGACAACTTC
AACAACAACAACAACAACGACAGCGATGGCAATGGTGAGGACGAGGACGA
GGATATAAACGAAGGCACGGGGGAGGAGAAACCAGACTTGAGCGCCTCCT
TCCTCATCAACTTCCTCAGTGGTTACAAGCAATTCATCTCCCCCCTCCTC
CCCAAGGCCTGTCGGTTCTTTCCCACATGCAGCGAATACGCCATCGAATC
AATTCAGACCTTTGGAGCGGCCAAAGGGATTATCCTGACCGTATGGCGGC
TCCTGCGATGCAATCCGCTCGGAGGGAGGGGATGGGACCCCCCACAGTGG
CCGCCGCCCGGGTGGTTCGCGGGGGGAACGGGGAGATAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr5:152976..154445-

>NO05G00400.1 ID=NO05G00400.1|Name=NO05G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr5:152976..154445- (Nannochloropsis oceanica)
ATGTGCAACACCATGACGGACAAGGCCCCAAAAAAGAAAAGGCACCAGCA
GAGTCCGTTCATGTGTCAAGGCGAAGTAAATGAAGTGATGCGTGCTTTTG
CAGAGGACTGGGGTCATGAGACCATTGTCCGCGCACTGGCCACCAAGGCC
CAGGAGGCAGGTCCTAGCGTATTAAAGGTGGATCGTGTGAAGAACCAGCT
GGTGCAGCGCGCCCGGGATGTCATTCGCGATGCTAGTTTATACGTATATA
GTGGCCTCTTCGACAAGAGAATCGAAATGCGAGTCCATACTAAGCCCCAC
TATTATGAACGAGACGGGCGGATAGTGATATGCATGTATCGTACCAGAAG
AAGAAGGGCACGTGGTGCGAGAACACCACCACCATTTAAACCCATGGAGA
GACCACCAGCGAAGGAGGACGGGGGAGGACAGGGGCAATGCCCCTTCAGC
CCAACCAATAAACCAGCTTCCAATCTCATTATTATTCACTGCTTCTTCGC
TGTCTGCCTCCTCGTCCTCGTCGCTTTTATCCGCCTACCCACCGCCCATG
CTTTTCATCATGGCCCTTCCTTCCCGCCTCCATTCCCGTCCTCTTTCTCC
TCCGGCTTCCGTCCTCGCGCCCTTTCTCCCTCCCTCCCTCCCTCCTTCTG
CCAATCCTGCTTGGACAACAACGAAAAGATCGTCAACTTTCTCATGAATC
ATCAGAGAGCTAACCGCAAGATCAAGAACATGAGAATACAGCAGCAGCGG
CACCAGCAGCAGTGGGAAACGAGCAAGAGAAGGCCCAGCTACCTCGGAGA
TCTTCATTCGCCTGCCCTTACCCTTCCCTTTCCTCTTTCTCCCTTGTATC
TCGCCTCTGTCACCGACAACTTAGACAACGACAACTTAGACAACTTCAAC
AACAACAACAACAACGACAGCGATGGCAATGGTGAGGACGAGGACGAGGA
TATAAACGAAGGCACGGGGGAGGAGAAACCAGACTTGAGCGCCTCCTTCC
TCATCAACTTCCTCAGTGGTTACAAGCAATTCATCTCCCCCCTCCTCCCC
AAGGCCTGTCGGTTCTTTCCCACATGCAGCGAATACGCCATCGAATCAAT
TCAGACCTTTGGAGCGGCCAAAGGGATTATCCTGACCGTATGGCGGCTCC
TGCGATGCAATCCGCTCGGAGGGAGGGGATGGGACCCCCCACAGTGGCCG
CCGCCCGGGTGGTTCGCGGGGGGAACGGGGAGATAG
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Synonyms
Publications