NO05G00280, NO05G00280 (gene) Nannochloropsis oceanica

Overview
NameNO05G00280
Unique NameNO05G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1406
Alignment locationchr5:124225..125630 +

Link to JBrowse

Properties
Property NameValue
DescriptionCST complex subunit STN1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:124225..125630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
[Close]
BLAST of NO05G00280 vs. NCBI_GenBank
Match: EWM28363.1 (hypothetical protein Naga_101590g2 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:   38 SHLWGLDPLFWTYIRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKRQ 102
            SH WGLDPLFWTYIRALAC L PP+L+Y+EGFDFGPF  GP  RPVCKAM++GT+VAVRQ KRQ
Sbjct:   34 SHSWGLDPLFWTYIRALACILSPPHLQYLEGFDFGPFLLGPGERPVCKAMLVGTVVAVRQLKRQ 97
The following BLAST results are available for this feature:
BLAST of NO05G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28363.11.600e-2278.13hypothetical protein Naga_101590g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003864NSK003864Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00280.1NO05G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101590g2gene2214Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00280.1NO05G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00280 ID=NO05G00280|Name=NO05G00280|organism=Nannochloropsis oceanica|type=gene|length=1406bp
ATGGAAGAGGAGGACGAAGACGAGGATGAGGAAGCGGTAGCGCCGATGGA
GCAGACAAGGGAGCCGCCGCAGCAGCCACAGGAGGAGCAGCAGAAAGCGG
AGCCCCCACCCTCGCATCTATGGGGCTTGGACCCTCTCTTTTGGgtgaga
ccaggagaagaagaaatgaaatgtagagactagaaggaggagaagaaaga
aagaaagggaagacatagtgtggggacggggtaaaaagcttagttgacag
cctgagtcgccgtctcattcctccctccccttttttcggccctgtctccc
tgtctccctccttccttccctcccctagACCTATATCCGCGCTCTGGCTT
GCCATCTCGTCCCTCCCTACCTCGAGTACATCGAAGGCTTTGATTTCGGG
CCGTTTTTTTACGGTCCTCACAGACGGCCGGTGTGCAAGGCCATGATGAT
GGGGACCATCGTGGCAGTCCGGCAGCAAAAGCGGCAAGgtgagggaggga
gggagggtcgataggtttaaaaggatgtagaggagaaaggagtcgttgag
acattacctggcaggagacggtggtatttctttcattttctcaagtgcaa
accaccattcactccctttctccaccctcccttcctccccagTCGCCTTC
TGGCTTGACGACGGCACGGGTCTGATGCAATGCACCTTTTGGCCCCCAGA
CCTGGACGTGTTCGCACGTGATGATTTCCTCTACGGGGGAGGAGGGGAGG
GAGGGAGGGAAGGAGGGAAGGCGGTGGCCCGTGTGATGGAGAAGGTTGGG
GCCGGGGCTGGGTTTCGAAGGACGCGGGATAGCGGGCTGGATGATAGAGC
GTTCCAAGCGATTCAGGTGGGCCACTCGGTGGTGGTGCTGGGCGATCTGC
AGCATTACCGAGGgtgaggagaagggaagagagggggggggggaaggtgg
aggggtatgtgatgacagggcgtttcgggcgattaaaaatggtgctggag
aactgaagctcccttcccctccctccctccctccctctctctctgcctgt
tgtgtttacacacttcatccccctcctttctcattcattcctccgtcctt
ccctccctccatccctccctcagCATCACTTTTCTTAACGTGAAGGGCGA
CGTGCGCGAGGCCGAGGGTCCCCACGAGGAGGTTGCCCACTGGCTACAGG
CCGTTCACCTCAACGgtcaaatctactcccagccgtttcaggtcctccct
ctctccctccttctttccctctcccccttccgccttcccttcaccatctt
ctccgcattcctgggtttatcccctttaacttgctcatctttcctccctt
tccctccctccctccctccctccctccttccctcccttcttccctgccca
gCGTGA
back to top

protein sequence of NO05G00280.1

>NO05G00280.1-protein ID=NO05G00280.1-protein|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEEEDEDEDEEAVAPMEQTREPPQQPQEEQQKAEPPPSHLWGLDPLFWTY
IRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKR
QVAFWLDDGTGLMQCTFWPPDLDVFARDDFLYGGGGEGGREGGKAVARVM
EKVGAGAGFRRTRDSGLDDRAFQAIQVGHSVVVLGDLQHYRGITFLNVKG
DVREAEGPHEEVAHWLQAVHLNA*
back to top
Synonyms
Publications