NO05G00280.1, NO05G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00280.1
Unique NameNO05G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr5:124225..125630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:124225..125630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00280.1 vs.
Match: EWM28363.1 (hypothetical protein Naga_101590g2 [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 7.100e-23
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 0 
Query:   15 PMEQTREPPQQPQEEQQKAEPPPSHLWGLDPLFWTYIRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKRQ 102
            P++  R  P    E    A+  PSH WGLDPLFWTYIRALAC L PP+L+Y+EGFDFGPF  GP  RPVCKAM++GT+VAVRQ KRQ
Sbjct:   15 PVDDARSLP----EGTSAADGSPSHSWGLDPLFWTYIRALACILSPPHLQYLEGFDFGPFLLGPGERPVCKAMLVGTVVAVRQLKRQ 97
The following BLAST results are available for this feature:
BLAST of NO05G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28363.17.100e-2364.37hypothetical protein Naga_101590g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00280NO05G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00280.1NO05G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00280.1.cds1NO05G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00280.1.cds2NO05G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00280.1.cds3NO05G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00280.1.cds4NO05G00280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00280.1.cds5NO05G00280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00280.1 ID=NO05G00280.1|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGGAAGAGGAGGACGAAGACGAGGATGAGGAAGCGGTAGCGCCGATGGA
GCAGACAAGGGAGCCGCCGCAGCAGCCACAGGAGGAGCAGCAGAAAGCGG
AGCCCCCACCCTCGCATCTATGGGGCTTGGACCCTCTCTTTTGGACCTAT
ATCCGCGCTCTGGCTTGCCATCTCGTCCCTCCCTACCTCGAGTACATCGA
AGGCTTTGATTTCGGGCCGTTTTTTTACGGTCCTCACAGACGGCCGGTGT
GCAAGGCCATGATGATGGGGACCATCGTGGCAGTCCGGCAGCAAAAGCGG
CAAGTCGCCTTCTGGCTTGACGACGGCACGGGTCTGATGCAATGCACCTT
TTGGCCCCCAGACCTGGACGTGTTCGCACGTGATGATTTCCTCTACGGGG
GAGGAGGGGAGGGAGGGAGGGAAGGAGGGAAGGCGGTGGCCCGTGTGATG
GAGAAGGTTGGGGCCGGGGCTGGGTTTCGAAGGACGCGGGATAGCGGGCT
GGATGATAGAGCGTTCCAAGCGATTCAGGTGGGCCACTCGGTGGTGGTGC
TGGGCGATCTGCAGCATTACCGAGGCATCACTTTTCTTAACGTGAAGGGC
GACGTGCGCGAGGCCGAGGGTCCCCACGAGGAGGTTGCCCACTGGCTACA
GGCCGTTCACCTCAACGCGTGA
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protein sequence of NO05G00280.1

>NO05G00280.1-protein ID=NO05G00280.1-protein|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEEEDEDEDEEAVAPMEQTREPPQQPQEEQQKAEPPPSHLWGLDPLFWTY
IRALACHLVPPYLEYIEGFDFGPFFYGPHRRPVCKAMMMGTIVAVRQQKR
QVAFWLDDGTGLMQCTFWPPDLDVFARDDFLYGGGGEGGREGGKAVARVM
EKVGAGAGFRRTRDSGLDDRAFQAIQVGHSVVVLGDLQHYRGITFLNVKG
DVREAEGPHEEVAHWLQAVHLNA*
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mRNA from alignment at chr5:124225..125630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00280.1 ID=NO05G00280.1|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp|location=Sequence derived from alignment at chr5:124225..125630+ (Nannochloropsis oceanica)
ATGGAAGAGGAGGACGAAGACGAGGATGAGGAAGCGGTAGCGCCGATGGA
GCAGACAAGGGAGCCGCCGCAGCAGCCACAGGAGGAGCAGCAGAAAGCGG
AGCCCCCACCCTCGCATCTATGGGGCTTGGACCCTCTCTTTTGGGTGAGA
CCAGGAGAAGAAGAAATGAAATGTAGAGACTAGAAGGAGGAGAAGAAAGA
AAGAAAGGGAAGACATAGTGTGGGGACGGGGTAAAAAGCTTAGTTGACAG
CCTGAGTCGCCGTCTCATTCCTCCCTCCCCTTTTTTCGGCCCTGTCTCCC
TGTCTCCCTCCTTCCTTCCCTCCCCTAGACCTATATCCGCGCTCTGGCTT
GCCATCTCGTCCCTCCCTACCTCGAGTACATCGAAGGCTTTGATTTCGGG
CCGTTTTTTTACGGTCCTCACAGACGGCCGGTGTGCAAGGCCATGATGAT
GGGGACCATCGTGGCAGTCCGGCAGCAAAAGCGGCAAGGTGAGGGAGGGA
GGGAGGGTCGATAGGTTTAAAAGGATGTAGAGGAGAAAGGAGTCGTTGAG
ACATTACCTGGCAGGAGACGGTGGTATTTCTTTCATTTTCTCAAGTGCAA
ACCACCATTCACTCCCTTTCTCCACCCTCCCTTCCTCCCCAGTCGCCTTC
TGGCTTGACGACGGCACGGGTCTGATGCAATGCACCTTTTGGCCCCCAGA
CCTGGACGTGTTCGCACGTGATGATTTCCTCTACGGGGGAGGAGGGGAGG
GAGGGAGGGAAGGAGGGAAGGCGGTGGCCCGTGTGATGGAGAAGGTTGGG
GCCGGGGCTGGGTTTCGAAGGACGCGGGATAGCGGGCTGGATGATAGAGC
GTTCCAAGCGATTCAGGTGGGCCACTCGGTGGTGGTGCTGGGCGATCTGC
AGCATTACCGAGGGTGAGGAGAAGGGAAGAGAGGGGGGGGGGGAAGGTGG
AGGGGTATGTGATGACAGGGCGTTTCGGGCGATTAAAAATGGTGCTGGAG
AACTGAAGCTCCCTTCCCCTCCCTCCCTCCCTCCCTCTCTCTCTGCCTGT
TGTGTTTACACACTTCATCCCCCTCCTTTCTCATTCATTCCTCCGTCCTT
CCCTCCCTCCATCCCTCCCTCAGCATCACTTTTCTTAACGTGAAGGGCGA
CGTGCGCGAGGCCGAGGGTCCCCACGAGGAGGTTGCCCACTGGCTACAGG
CCGTTCACCTCAACGGTCAAATCTACTCCCAGCCGTTTCAGGTCCTCCCT
CTCTCCCTCCTTCTTTCCCTCTCCCCCTTCCGCCTTCCCTTCACCATCTT
CTCCGCATTCCTGGGTTTATCCCCTTTAACTTGCTCATCTTTCCTCCCTT
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTTCTTCCCTGCCCA
GCGTGA
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Coding sequence (CDS) from alignment at chr5:124225..125630+

>NO05G00280.1 ID=NO05G00280.1|Name=NO05G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr5:124225..125630+ (Nannochloropsis oceanica)
ATGGAAGAGGAGGACGAAGACGAGGATGAGGAAGCGGTAGCGCCGATGGA
GCAGACAAGGGAGCCGCCGCAGCAGCCACAGGAGGAGCAGCAGAAAGCGG
AGCCCCCACCCTCGCATCTATGGGGCTTGGACCCTCTCTTTTGGACCTAT
ATCCGCGCTCTGGCTTGCCATCTCGTCCCTCCCTACCTCGAGTACATCGA
AGGCTTTGATTTCGGGCCGTTTTTTTACGGTCCTCACAGACGGCCGGTGT
GCAAGGCCATGATGATGGGGACCATCGTGGCAGTCCGGCAGCAAAAGCGG
CAAGTCGCCTTCTGGCTTGACGACGGCACGGGTCTGATGCAATGCACCTT
TTGGCCCCCAGACCTGGACGTGTTCGCACGTGATGATTTCCTCTACGGGG
GAGGAGGGGAGGGAGGGAGGGAAGGAGGGAAGGCGGTGGCCCGTGTGATG
GAGAAGGTTGGGGCCGGGGCTGGGTTTCGAAGGACGCGGGATAGCGGGCT
GGATGATAGAGCGTTCCAAGCGATTCAGGTGGGCCACTCGGTGGTGGTGC
TGGGCGATCTGCAGCATTACCGAGGCATCACTTTTCTTAACGTGAAGGGC
GACGTGCGCGAGGCCGAGGGTCCCCACGAGGAGGTTGCCCACTGGCTACA
GGCCGTTCACCTCAACGCGTGA
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Synonyms
Publications