NO05G00050, NO05G00050 (gene) Nannochloropsis oceanica

Overview
NameNO05G00050
Unique NameNO05G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1082
Alignment locationchr5:13926..15007 -

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Properties
Property NameValue
DescriptionTrafficking protein particle complex 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:13926..15007 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
GO:0016020membrane
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR007233Sybindin
Homology
BLAST of NO05G00050 vs. NCBI_GenBank
Match: EWM28399.1 (trafficking protein particle complex 1 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 1.300e-52
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKN 116
            MIYNLYIFDRRGACLFYREW RPLNTLAEDPEEE+KLMFGML+SIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFET+TGLRFVLNTDNSIVDMRGHLRHIY+    E  V++
Sbjct:   75 MIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQD 189          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: CBJ33343.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 153.7 bits (387), Expect = 4.800e-34
Identity = 83/158 (52.53%), Postives = 108/158 (68.35%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTL--AEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157
            MIYNLYIF+R+G CL+YREW+RP NTL  A D  EE++LMFGML+S+K +V  + +  A   S GL+ L+T++YTLHH ET +GLRFVLNTDN+  D+R  LR +Y+GI+VE+V K+PQ+          DG   R    PAF   LEEY+  L  FK
Sbjct:    1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPA---SAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVEYVAKHPQF-------NPVDGSPIR---LPAFDSRLEEYLRSLACFK 145          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_003388183.1 (PREDICTED: trafficking protein particle complex subunit 1-like [Amphimedon queenslandica])

HSP 1 Score: 129.0 bits (323), Expect = 1.300e-26
Identity = 64/153 (41.83%), Postives = 95/153 (62.09%), Query Frame = 0
Query:    3 YNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156
            YNLYIFDR  +CLFYR+W++ +      PEEERKL++GM++S+K L++ L   +  S+ DG     T+ Y LH +ET TG +F+LNTD+   D++  L+HIY  I+VE+V+KNP YK+G   + +             FV+ L+ Y+   P F
Sbjct:    4 YNLYIFDRNCSCLFYRQWAK-VKECGISPEEERKLLYGMVYSLKSLLSRL---SPVSTRDGFIGYSTDKYKLHIYETPTGTKFILNTDHKAGDLQEMLQHIYTKIYVEYVIKNPHYKLGTTIDSQ------------LFVKELDNYIQSKPFF 140          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: OQR97867.1 (trafficking protein particle complex subunit [Achlya hypogyna])

HSP 1 Score: 128.6 bits (322), Expect = 1.700e-26
Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157
            MIYNLYIF+R GACL Y EW+R  + ++  D EEE++LMFG++FS+K  +  +    + +++  L   +TNAYT HH ET +GLRF+L +DN+  D++  L+H+Y  ++VE V KNP +          D    +      F  ++ +Y+  LP F+
Sbjct:    1 MIYNLYIFNRSGACLLYEEWNRSSDAISLSDAEEEKRLMFGLIFSLKEFLRKMAPSASATTAQSLKTFKTNAYTCHHMETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DATSTKPIKCKLFRHSVRQYMESLPCFR 147          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_008609466.1 (hypothetical protein SDRG_05525 [Saprolegnia diclina VS20] >EQC37304.1 hypothetical protein SDRG_05525 [Saprolegnia diclina VS20])

HSP 1 Score: 126.7 bits (317), Expect = 6.300e-26
Identity = 61/157 (38.85%), Postives = 93/157 (59.24%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157
            MIYNLYIF+R GACL Y EW+R  + +   D EEE++LMFG++FS+K  +  +    + +SS  L   +T+ YT HH ET +GLRF+L +DN+  D++  L+H+Y  ++VE V KNP +          D    +      F  ++ +Y+  LP F+
Sbjct:    1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DAKSTKPIKCKLFRHSVRQYMESLPCFR 147          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_012199875.1 (hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65] >KDO29372.1 hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157
            MIYNLYIF+R GACL Y EW+R  + +   D EEE++LMFG++FS+K  +  +    + +SS  L   +T+ YT HH ET +GLRF+L +DN+  D++  L+H+Y  ++VE V KNP +          D    +      F  ++  Y+  LP F+
Sbjct:    1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVH----------DAKSTKPIKCKLFRHSVRHYMESLPCFR 147          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: GBG29519.1 (Trafficking protein particle complex subunit 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 0
Query:    2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIK--------GLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTD--NSIV--DMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGL 153
            IYN Y+FDRRG CLFY+EWSR  N LA++P+E+ KL+FG+LFS+K        G  A   + +AP +   +    TN +TLH +ET +GLRFVLNTD  NS +  +++  LR  YA ++V  VV+NP +  GE  E             P+F + L+  + G+
Sbjct:    5 IYNFYVFDRRGVCLFYQEWSREHNPLADNPDEDAKLVFGLLFSLKQLGRKFSPGSGATTNAGDAPDTRGNMTSFSTNKFTLHQYETASGLRFVLNTDKCNSQICKNIQETLRSTYADLYVHMVVRNPMFTPGEPIEN------------PSFRKKLDAMMVGM 155          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_019625605.1 (PREDICTED: trafficking protein particle complex subunit 1-like [Branchiostoma belcheri])

HSP 1 Score: 125.6 bits (314), Expect = 1.400e-25
Identity = 67/154 (43.51%), Postives = 90/154 (58.44%), Query Frame = 0
Query:    2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156
            ++NLYIFDR G CL Y EW+R         EEE KLM+GMLFSIK  ++ L   +     DG  + +TN Y LH +ET +GL+FV+NTD +  +MR  L  IY+ I+VE+VVKNP Y++G+  E               F   L+ +V GLP F
Sbjct:    3 VFNLYIFDRNGTCLHYSEWNRKKQP-GMSREEEFKLMYGMLFSIKSFISRL---SPTDYKDGFLNYQTNKYKLHFYETPSGLKFVMNTDLAAGNMRETLHQIYSSIYVEYVVKNPLYELGQPIESE------------LFKAKLDNFVRGLPMF 140          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: ELT88724.1 (hypothetical protein CAPTEDRAFT_19288 [Capitella teleta])

HSP 1 Score: 124.0 bits (310), Expect = 4.100e-25
Identity = 67/154 (43.51%), Postives = 91/154 (59.09%), Query Frame = 0
Query:    2 IYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAF 156
            +YNLYIFDR G CL+Y EW+R  N       EE KLM+GMLFSIK   + +   +     DG  +LRTN + LH +ET +GL+FVLNTD S+ ++R  L  IY+ I++E+V+KNP    G+V E               F   L+++V GLP F
Sbjct:    3 VYNLYIFDREGTCLYYHEWNR-RNQSGICKTEEYKLMYGMLFSIKSFCSRM---SPIDQKDGFMNLRTNKFKLHFYETPSGLKFVLNTDLSVGNIRDTLHQIYSSIYLEYVMKNPLCVQGDVIESE------------LFQTKLDDFVRGLPIF 140          
BLAST of NO05G00050 vs. NCBI_GenBank
Match: XP_008869063.1 (hypothetical protein H310_05967 [Aphanomyces invadans] >ETW02458.1 hypothetical protein H310_05967 [Aphanomyces invadans])

HSP 1 Score: 124.0 bits (310), Expect = 4.100e-25
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 0
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLA-EDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVTGLPAFK 157
            MIYN YIF+R GACL Y EW+R  + +   D EEE++LMFG++FS+K  +  +   ++   +  L   +T+ YT HH ET +GLRF+L+TD +  D++  L+H+Y  ++VE V KNP +          D   G       F  +++ Y+  LP FK
Sbjct:    1 MIYNFYIFNRSGACLMYEEWNRSSDAITLNDAEEEKRLMFGLIFSLKEFLRKMSPPSSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDCASGDLQDALQHMYGNLYVELVTKNPAH----------DARSGNPIKCKLFRASIKAYIESLPCFK 147          
The following BLAST results are available for this feature:
BLAST of NO05G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28399.11.300e-5288.70trafficking protein particle complex 1 [Nannochlor... [more]
CBJ33343.14.800e-3452.53conserved unknown protein [Ectocarpus siliculosus][more]
XP_003388183.11.300e-2641.83PREDICTED: trafficking protein particle complex su... [more]
OQR97867.11.700e-2638.85trafficking protein particle complex subunit [Achl... [more]
XP_008609466.16.300e-2638.85hypothetical protein SDRG_05525 [Saprolegnia dicli... [more]
XP_012199875.11.100e-2538.85hypothetical protein SPRG_05908 [Saprolegnia paras... [more]
GBG29519.11.100e-2541.72Trafficking protein particle complex subunit 1 [Au... [more]
XP_019625605.11.400e-2543.51PREDICTED: trafficking protein particle complex su... [more]
ELT88724.14.100e-2543.51hypothetical protein CAPTEDRAFT_19288 [Capitella t... [more]
XP_008869063.14.100e-2538.22hypothetical protein H310_05967 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003919NSK003919Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00050.1NO05G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100206g3gene2181Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00050.1NO05G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00050 ID=NO05G00050|Name=NO05G00050|organism=Nannochloropsis oceanica|type=gene|length=1082bp
ACAGGCCACACGACGGACCTAAGAGCACGTGGTTGGCAAAAGGCTTAGGC
ATATTTGTCAAGGACCCGCTGTGTCGCTCTGTCTCCATACGACAAGCAAG
CTCGGCAAGGCCGTGCTTACCGCACACGCCGCACTCGCCGCACTCGCAGC
CATGATCTACAACCTCTACATTTTCGATCGTCGGgtatgtgtctggaaaa
cgccttcttcatcccctcctccccatcctcctccgacccatccctccctc
cctttctctcccttcctcctcccctccatctctaccagGGCGCCTGCCTC
TTCTACCGGGAATGGTCCCGGCCCCTGAACACCCTGGCCGAAGACCCCGA
GGAGGAAAGAAAGCTGATGTTTGGAATGCTGTTCTCAATCAAGGGCTTGG
TTGCAGCGCTCGGCAGCAAGgtgagcagtggaagccatgcctggaaggag
cgaaaagtgaacatctgcaaaatgtcttccacatccacgcatccacgaca
tttcaataaattgattctttgccatacatcattctcgatgcatgcttaca
gAATGCTCCCTCTTCGTCGGATGGGCTGAACCACTTGCGGACCAATGCCT
ACACCCTGCATCACTTTGAGACCATGACGGGCTTGCGCTTTGTCCTCAAC
ACTGACAATTCCATCGTCGACATGCGCGGGCACCTGAGGCATATCTATGC
AGgtagggctacagacaaggaaaaaaagagggaaaaagagggaggagcct
tgacaggggatgggatgctttggattttttttaattgaattctctctatt
cctccctttttccccctgttttcttaagGCATTTGGGTGGAGCATGTGGT
CAAGAACCCGCAATACAAGATAGGAGAAGTGAGGGAAGGACGCAAGGATG
GAGGTAGAGGACGCAATCAATTACCGCCGGCCTTTGTCCAGAATCTGGAG
GAGTACGTGACGGGGCTACCGGCGTTTAAGTAAAGGGAAGGTGGGAGAGA
GGGACAAGCATGTACATTAATAAGGAACGATGGCTTCCTGGCAAAACGGA
ACCAAAAGGAAACAAAAATCGCCTTGTCATCA
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protein sequence of NO05G00050.1

>NO05G00050.1-protein ID=NO05G00050.1-protein|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MIYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVA
ALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHL
RHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVT
GLPAFK*
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Synonyms
Publications