NO05G00050.1, NO05G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00050.1
Unique NameNO05G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length721
Alignment locationchr5:13926..15007 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:13926..15007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00050.1 vs.
Match: EWM28399.1 (trafficking protein particle complex 1 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 1.300e-52
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 0 
Query:    1 MIYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHLRHIYAGIWVEHVVKN 116
            MIYNLYIFDRRGACLFYREW RPLNTLAEDPEEE+KLMFGML+SIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFET+TGLRFVLNTDNSIVDMRGHLRHIY+    E  V++
Sbjct:   75 MIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQD 189
The following BLAST results are available for this feature:
BLAST of NO05G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28399.11.300e-5288.70trafficking protein particle complex 1 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00050NO05G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00050.1NO05G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00050.1.cds1NO05G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00050.1.cds2NO05G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00050.1.cds3NO05G00050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00050.1.cds4NO05G00050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00050.1 ID=NO05G00050.1|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=721bp
ACAGGCCACACGACGGACCTAAGAGCACGTGGTTGGCAAAAGGCTTAGGC
ATATTTGTCAAGGACCCGCTGTGTCGCTCTGTCTCCATACGACAAGCAAG
CTCGGCAAGGCCGTGCTTACCGCACACGCCGCACTCGCCGCACTCGCAGC
CATGATCTACAACCTCTACATTTTCGATCGTCGGGGCGCCTGCCTCTTCT
ACCGGGAATGGTCCCGGCCCCTGAACACCCTGGCCGAAGACCCCGAGGAG
GAAAGAAAGCTGATGTTTGGAATGCTGTTCTCAATCAAGGGCTTGGTTGC
AGCGCTCGGCAGCAAGAATGCTCCCTCTTCGTCGGATGGGCTGAACCACT
TGCGGACCAATGCCTACACCCTGCATCACTTTGAGACCATGACGGGCTTG
CGCTTTGTCCTCAACACTGACAATTCCATCGTCGACATGCGCGGGCACCT
GAGGCATATCTATGCAGGCATTTGGGTGGAGCATGTGGTCAAGAACCCGC
AATACAAGATAGGAGAAGTGAGGGAAGGACGCAAGGATGGAGGTAGAGGA
CGCAATCAATTACCGCCGGCCTTTGTCCAGAATCTGGAGGAGTACGTGAC
GGGGCTACCGGCGTTTAAGTAAAGGGAAGGTGGGAGAGAGGGACAAGCAT
GTACATTAATAAGGAACGATGGCTTCCTGGCAAAACGGAACCAAAAGGAA
ACAAAAATCGCCTTGTCATCA
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protein sequence of NO05G00050.1

>NO05G00050.1-protein ID=NO05G00050.1-protein|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MIYNLYIFDRRGACLFYREWSRPLNTLAEDPEEERKLMFGMLFSIKGLVA
ALGSKNAPSSSDGLNHLRTNAYTLHHFETMTGLRFVLNTDNSIVDMRGHL
RHIYAGIWVEHVVKNPQYKIGEVREGRKDGGRGRNQLPPAFVQNLEEYVT
GLPAFK*
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mRNA from alignment at chr5:13926..15007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00050.1 ID=NO05G00050.1|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at chr5:13926..15007- (Nannochloropsis oceanica)
ACAGGCCACACGACGGACCTAAGAGCACGTGGTTGGCAAAAGGCTTAGGC
ATATTTGTCAAGGACCCGCTGTGTCGCTCTGTCTCCATACGACAAGCAAG
CTCGGCAAGGCCGTGCTTACCGCACACGCCGCACTCGCCGCACTCGCAGC
CATGATCTACAACCTCTACATTTTCGATCGTCGGGTATGTGTCTGGAAAA
CGCCTTCTTCATCCCCTCCTCCCCATCCTCCTCCGACCCATCCCTCCCTC
CCTTTCTCTCCCTTCCTCCTCCCCTCCATCTCTACCAGGGCGCCTGCCTC
TTCTACCGGGAATGGTCCCGGCCCCTGAACACCCTGGCCGAAGACCCCGA
GGAGGAAAGAAAGCTGATGTTTGGAATGCTGTTCTCAATCAAGGGCTTGG
TTGCAGCGCTCGGCAGCAAGGTGAGCAGTGGAAGCCATGCCTGGAAGGAG
CGAAAAGTGAACATCTGCAAAATGTCTTCCACATCCACGCATCCACGACA
TTTCAATAAATTGATTCTTTGCCATACATCATTCTCGATGCATGCTTACA
GAATGCTCCCTCTTCGTCGGATGGGCTGAACCACTTGCGGACCAATGCCT
ACACCCTGCATCACTTTGAGACCATGACGGGCTTGCGCTTTGTCCTCAAC
ACTGACAATTCCATCGTCGACATGCGCGGGCACCTGAGGCATATCTATGC
AGGTAGGGCTACAGACAAGGAAAAAAAGAGGGAAAAAGAGGGAGGAGCCT
TGACAGGGGATGGGATGCTTTGGATTTTTTTTAATTGAATTCTCTCTATT
CCTCCCTTTTTCCCCCTGTTTTCTTAAGGCATTTGGGTGGAGCATGTGGT
CAAGAACCCGCAATACAAGATAGGAGAAGTGAGGGAAGGACGCAAGGATG
GAGGTAGAGGACGCAATCAATTACCGCCGGCCTTTGTCCAGAATCTGGAG
GAGTACGTGACGGGGCTACCGGCGTTTAAGTAAAGGGAAGGTGGGAGAGA
GGGACAAGCATGTACATTAATAAGGAACGATGGCTTCCTGGCAAAACGGA
ACCAAAAGGAAACAAAAATCGCCTTGTCATCA
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Coding sequence (CDS) from alignment at chr5:13926..15007-

>NO05G00050.1 ID=NO05G00050.1|Name=NO05G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr5:13926..15007- (Nannochloropsis oceanica)
ATGATCTACAACCTCTACATTTTCGATCGTCGGGGCGCCTGCCTCTTCTA
CCGGGAATGGTCCCGGCCCCTGAACACCCTGGCCGAAGACCCCGAGGAGG
AAAGAAAGCTGATGTTTGGAATGCTGTTCTCAATCAAGGGCTTGGTTGCA
GCGCTCGGCAGCAAGAATGCTCCCTCTTCGTCGGATGGGCTGAACCACTT
GCGGACCAATGCCTACACCCTGCATCACTTTGAGACCATGACGGGCTTGC
GCTTTGTCCTCAACACTGACAATTCCATCGTCGACATGCGCGGGCACCTG
AGGCATATCTATGCAGGCATTTGGGTGGAGCATGTGGTCAAGAACCCGCA
ATACAAGATAGGAGAAGTGAGGGAAGGACGCAAGGATGGAGGTAGAGGAC
GCAATCAATTACCGCCGGCCTTTGTCCAGAATCTGGAGGAGTACGTGACG
GGGCTACCGGCGTTTAAGTAA
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Synonyms
Publications