NO05G00030, NO05G00030 (gene) Nannochloropsis oceanica

Overview
NameNO05G00030
Unique NameNO05G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1774
Alignment locationchr5:8064..9837 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-directed RNA polymerase III, subunit Rpc31
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:8064..9837 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
GO:0006383transcription by RNA polymerase III
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31
Homology
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BLAST of NO05G00030 vs. NCBI_GenBank
Match: EWM28402.1 (DNA-directed RNA polymerase III, subunit Rpc31 [Nannochloropsis gaditana])

HSP 1 Score: 181.8 bits (460), Expect = 3.700e-42
Identity = 110/166 (66.27%), Postives = 121/166 (72.89%), Query Frame = 0 
Query:    1 MMGRGRGRGXXXXXXXXXXXXXXXXXALDHLRDTAEEMGLP--ATMGSSQQEPLPSYPYIPIYPPKPLTEEEGIKIQAQRELVHWWQQSVYYLKPAPRSKTVVKEIARYSDRYKRNTGEEGXXXXXXXXXXXXXXXXXXXXTLWETIHVPEAQAQSAVYVPVELLP 165
            MMGRGRGRG XXXXXXXXXXXX    ALDHLRDTAEEMGL   A  GS+QQEPLPSYPYIPIYPP+PLTE+EGIKIQAQRELVHWWQ SVYYL+PA R+ TV KEI RYSDRY+     +G                    +LWE IHVPE ++ SAVY+P EL P
Sbjct:    1 MMGRGRGRG-XXXXXXXXXXXXGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDG---SRGPEAEKDGVKRSRRASLWEVIHVPEPKSDSAVYIPFELYP 162
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BLAST of NO05G00030 vs. NCBI_GenBank
Match: EWM28403.1 (DNA-directed RNA polymerase III, subunit Rpc31 [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 2.700e-37
Identity = 102/155 (65.81%), Postives = 112/155 (72.26%), Query Frame = 0 
Query:    1 MMGRGRGRGXXXXXXXXXXXXXXXXXALDHLRDTAEEMGLP--ATMGSSQQEPLPSYPYIPIYPPKPLTEEEGIKIQAQRELVHWWQQSVYYLKPAPRSKTVVKEIARYSDRYKRNTGEEGXXXXXXXXXXXXXXXXXXXXTLWETIHVPEAQAQ 154
            MMGRGRGRG XXXXXXXXXXXX    ALDHLRDTAEEMGL   A  GS+QQEPLPSYPYIPIYPP+PLTE+EGIKIQAQRELVHWWQ SVYYL+PA R+ TV KEI RYSDRY+     +G                    +LWE IHVPE + +
Sbjct:    1 MMGRGRGRG-XXXXXXXXXXXXGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDG---SRGPEAEKDGVKRSRRASLWEVIHVPEPKVR 151
The following BLAST results are available for this feature:
BLAST of NO05G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28402.13.700e-4266.27DNA-directed RNA polymerase III, subunit Rpc31 [Na... [more]
EWM28403.12.700e-3765.81DNA-directed RNA polymerase III, subunit Rpc31 [Na... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003921NSK003921Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00030.1NO05G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100206g5gene2179Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00030.1NO05G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00030 ID=NO05G00030|Name=NO05G00030|organism=Nannochloropsis oceanica|type=gene|length=1774bp
TCGCGGGTTTTTGGCACGGGGCCGCATGGGGCGCGTGTTAGCCTAACCCT
AACTCAGGACTCATTTTTATGTATGCCATATACACTACCACACACTCAAC
CACACCAACTCACCCACTCATTCACCAACACATAAAGGCAGCTTTATAAC
CTCTGGCATTACCTCTACGAGGGTTTCAAGCTGCTCCCGCCGCTGCTTCG
CTAGCGGTTCCAGGCACGCCTTCCTCTTTCGCTTGATATTGATATCTCTT
CACCTCTTCAAACACTCCACGATTGACAGCGTCAGCGTACCATGATGGGG
CGTGGGCGCGGCCGGGGAGGGCGGTTCGGAGGCCGGGGGGGCATGTCTGG
TGGGGGCGGAGGGCTGACTGCTTTGGACCACTTGCGAGATACGGCTGAGG
AAATGGGGCTGCCAGCCACAATGGGCTCGTCGCAGCAGGAGCCCTTGCCC
TCCTACCCATACATTCCCATCTACCCTCCAAAACCCTTGACGGAGGAGGA
GGGCATCAAGATCCAGGCCCAGCGGGAGCTCGgtaagtttcgatccaatc
tttcttggggggctcgggttgtaggggagaggctggagaagggagaaaaa
gcaatgcagcgtatgttcgctcttatcagatcaacatttctcaccggtaa
ctttgcaaatccagtcagtcagattgcaattccttacctcgtattgaagt
acttaaattcctccctccctccctttgttccctcccttctctcaatcctc
gatgccagTGCACTGGTGGCAGCAGTCAGTATACTACCTCAAGCCCGCCC
CGCGCTCCAAAACAGTCGTCAAGGAGATTGCCAGATACTCGGATAGATAC
AAACGCAACACGGGCGAGGAGGGAGGAGGAAGGGGAGCAGGGGTCGGAGG
TGGAGGAGGAGGAGGCAAGGGCAAAGGTCCTGCGACGTTGTGGGAGACCA
TCCATGTGCCCGAGGCTCAGgtacacagaagggatcatctgcacatacga
taactgtcatttacccgactctcctttcctcacatctttctgctcctcac
gttcttgatcatgtcctttgaacagGCGCAAAGCGCAGTGTACGTGCCCG
TGGAACTCCTACCTAGCACCCACCACCGGCCCCCACCCTCGACACGGGGC
CAGAAGGCGACACCAAAAAGCCGTATCCAGAAAGGAGGATCACCGGCGGC
GGTTGCGGCAGTGGCGGCGCTGGCAAAGgtaggcttggagggaggatcag
ggcgggaaaaatgggattcgcgtcttctggctgctcctctcatagtactc
atcatactcctgttttaaaaaccaaaatcatagCCCCGACGCCGCGTAGT
AGTGGAAGACGAGGATGAGGAGACTGATGAAGAGGATGAGGATGAGAAGA
AAGATGGCATGCGGCGGAAGCGGAAGAGCCCTGAGGGGGAGAAGGAAGGA
GCCAAGGAGGACGCGGTCGGGGCGGCTGTAGACAAGAAGGAGAATGAGAA
TGACGAGGATGAGGAGGAGGATGACGATAGGGTAGTAGAGGAAGAGGATG
AGGAGGTGGACGAGGACGACGACTATGCGATGAATCACTATATGAGTGAT
GACTATGATGGGGGGGGGACGGCGATGACGGCGGTGGGGAGAACGAGGCC
ATATTTTAGAGTGAGGGAAAAGCAGAAGGATAGTGTGTATAGTCAAAGAA
ATGTGAGGGAAAATGAGAATGCAGACTTCGCTCGTTGTTGCTGGTGGGGT
TTTGGGCATTTTTCGTCATATTAG
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protein sequence of NO05G00030.1

>NO05G00030.1-protein ID=NO05G00030.1-protein|Name=NO05G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MMGRGRGRGGRFGGRGGMSGGGGGLTALDHLRDTAEEMGLPATMGSSQQE
PLPSYPYIPIYPPKPLTEEEGIKIQAQRELVHWWQQSVYYLKPAPRSKTV
VKEIARYSDRYKRNTGEEGGGRGAGVGGGGGGGKGKGPATLWETIHVPEA
QAQSAVYVPVELLPSTHHRPPPSTRGQKATPKSRIQKGGSPAAVAAVAAL
AKPRRRVVVEDEDEETDEEDEDEKKDGMRRKRKSPEGEKEGAKEDAVGAA
VDKKENENDEDEEEDDDRVVEEEDEEVDEDDDYAMNHYMSDDYDGGGTAM
TAVGRTRPYFRVREKQKDSVYSQRNVRENENADFARCCWWGFGHFSSY*
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Synonyms
Publications