NO05G00030.1, NO05G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00030.1
Unique NameNO05G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr5:8064..9837 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:8064..9837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00030.1 vs.
Match: EWM28402.1 (DNA-directed RNA polymerase III, subunit Rpc31 [Nannochloropsis gaditana])

HSP 1 Score: 212.6 bits (540), Expect = 1.900e-51
Identity = 133/206 (64.56%), Postives = 147/206 (71.36%), Query Frame = 0 
Query:    1 MMGRGRGRGGRFGGRGGMSGGGGGLTALDHLRDTAEEMGLP--ATMGSSQQEPLPSYPYIPIYPPKPLTEEEGIKIQAQRELVHWWQQSVYYLKPAPRSKTVVKEIARYSDRYKRNTGEEGGGRGAGVGGGGGGGKGKGPATLWETIHVPEAQAQSAVYVPVELLPSTHHRPPPSTRGQKATPKSRIQKGGSPAAVAAVAALAKPR 205
            MMGRGRGRGGRFGGRGG+  GGGGLTALDHLRDTAEEMGL   A  GS+QQEPLPSYPYIPIYPP+PLTE+EGIKIQAQRELVHWWQ SVYYL+PA R+ TV KEI RYSDRY R T E  G RG        G K    A+LWE IHVPE ++ SAVY+P EL P      P   R +KA  K+  +  G  A  AA A +AK R
Sbjct:    1 MMGRGRGRGGRFGGRGGVP-GGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRY-RGTLENDGSRGP--EAEKDGVKRSRRASLWEVIHVPEPKSDSAVYIPFELYPRAKSSIP--RRREKALTKTGFRNRGKGA--AATATMAKVR 198
The following BLAST results are available for this feature:
BLAST of NO05G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28402.11.900e-5164.56DNA-directed RNA polymerase III, subunit Rpc31 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00030NO05G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00030.1NO05G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00030.1.cds1NO05G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00030.1.cds2NO05G00030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00030.1.cds3NO05G00030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00030.1.cds4NO05G00030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00030.1 ID=NO05G00030.1|Name=NO05G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
TCGCGGGTTTTTGGCACGGGGCCGCATGGGGCGCGTGTTAGCCTAACCCT
AACTCAGGACTCATTTTTATGTATGCCATATACACTACCACACACTCAAC
CACACCAACTCACCCACTCATTCACCAACACATAAAGGCAGCTTTATAAC
CTCTGGCATTACCTCTACGAGGGTTTCAAGCTGCTCCCGCCGCTGCTTCG
CTAGCGGTTCCAGGCACGCCTTCCTCTTTCGCTTGATATTGATATCTCTT
CACCTCTTCAAACACTCCACGATTGACAGCGTCAGCGTACCATGATGGGG
CGTGGGCGCGGCCGGGGAGGGCGGTTCGGAGGCCGGGGGGGCATGTCTGG
TGGGGGCGGAGGGCTGACTGCTTTGGACCACTTGCGAGATACGGCTGAGG
AAATGGGGCTGCCAGCCACAATGGGCTCGTCGCAGCAGGAGCCCTTGCCC
TCCTACCCATACATTCCCATCTACCCTCCAAAACCCTTGACGGAGGAGGA
GGGCATCAAGATCCAGGCCCAGCGGGAGCTCGTGCACTGGTGGCAGCAGT
CAGTATACTACCTCAAGCCCGCCCCGCGCTCCAAAACAGTCGTCAAGGAG
ATTGCCAGATACTCGGATAGATACAAACGCAACACGGGCGAGGAGGGAGG
AGGAAGGGGAGCAGGGGTCGGAGGTGGAGGAGGAGGAGGCAAGGGCAAAG
GTCCTGCGACGTTGTGGGAGACCATCCATGTGCCCGAGGCTCAGGCGCAA
AGCGCAGTGTACGTGCCCGTGGAACTCCTACCTAGCACCCACCACCGGCC
CCCACCCTCGACACGGGGCCAGAAGGCGACACCAAAAAGCCGTATCCAGA
AAGGAGGATCACCGGCGGCGGTTGCGGCAGTGGCGGCGCTGGCAAAGCCC
CGACGCCGCGTAGTAGTGGAAGACGAGGATGAGGAGACTGATGAAGAGGA
TGAGGATGAGAAGAAAGATGGCATGCGGCGGAAGCGGAAGAGCCCTGAGG
GGGAGAAGGAAGGAGCCAAGGAGGACGCGGTCGGGGCGGCTGTAGACAAG
AAGGAGAATGAGAATGACGAGGATGAGGAGGAGGATGACGATAGGGTAGT
AGAGGAAGAGGATGAGGAGGTGGACGAGGACGACGACTATGCGATGAATC
ACTATATGAGTGATGACTATGATGGGGGGGGGACGGCGATGACGGCGGTG
GGGAGAACGAGGCCATATTTTAGAGTGAGGGAAAAGCAGAAGGATAGTGT
GTATAGTCAAAGAAATGTGAGGGAAAATGAGAATGCAGACTTCGCTCGTT
GTTGCTGGTGGGGTTTTGGGCATTTTTCGTCATATTAG
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protein sequence of NO05G00030.1

>NO05G00030.1-protein ID=NO05G00030.1-protein|Name=NO05G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MMGRGRGRGGRFGGRGGMSGGGGGLTALDHLRDTAEEMGLPATMGSSQQE
PLPSYPYIPIYPPKPLTEEEGIKIQAQRELVHWWQQSVYYLKPAPRSKTV
VKEIARYSDRYKRNTGEEGGGRGAGVGGGGGGGKGKGPATLWETIHVPEA
QAQSAVYVPVELLPSTHHRPPPSTRGQKATPKSRIQKGGSPAAVAAVAAL
AKPRRRVVVEDEDEETDEEDEDEKKDGMRRKRKSPEGEKEGAKEDAVGAA
VDKKENENDEDEEEDDDRVVEEEDEEVDEDDDYAMNHYMSDDYDGGGTAM
TAVGRTRPYFRVREKQKDSVYSQRNVRENENADFARCCWWGFGHFSSY*
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mRNA from alignment at chr5:8064..9837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00030.1 ID=NO05G00030.1|Name=NO05G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at chr5:8064..9837+ (Nannochloropsis oceanica)
TCGCGGGTTTTTGGCACGGGGCCGCATGGGGCGCGTGTTAGCCTAACCCT
AACTCAGGACTCATTTTTATGTATGCCATATACACTACCACACACTCAAC
CACACCAACTCACCCACTCATTCACCAACACATAAAGGCAGCTTTATAAC
CTCTGGCATTACCTCTACGAGGGTTTCAAGCTGCTCCCGCCGCTGCTTCG
CTAGCGGTTCCAGGCACGCCTTCCTCTTTCGCTTGATATTGATATCTCTT
CACCTCTTCAAACACTCCACGATTGACAGCGTCAGCGTACCATGATGGGG
CGTGGGCGCGGCCGGGGAGGGCGGTTCGGAGGCCGGGGGGGCATGTCTGG
TGGGGGCGGAGGGCTGACTGCTTTGGACCACTTGCGAGATACGGCTGAGG
AAATGGGGCTGCCAGCCACAATGGGCTCGTCGCAGCAGGAGCCCTTGCCC
TCCTACCCATACATTCCCATCTACCCTCCAAAACCCTTGACGGAGGAGGA
GGGCATCAAGATCCAGGCCCAGCGGGAGCTCGGTAAGTTTCGATCCAATC
TTTCTTGGGGGGCTCGGGTTGTAGGGGAGAGGCTGGAGAAGGGAGAAAAA
GCAATGCAGCGTATGTTCGCTCTTATCAGATCAACATTTCTCACCGGTAA
CTTTGCAAATCCAGTCAGTCAGATTGCAATTCCTTACCTCGTATTGAAGT
ACTTAAATTCCTCCCTCCCTCCCTTTGTTCCCTCCCTTCTCTCAATCCTC
GATGCCAGTGCACTGGTGGCAGCAGTCAGTATACTACCTCAAGCCCGCCC
CGCGCTCCAAAACAGTCGTCAAGGAGATTGCCAGATACTCGGATAGATAC
AAACGCAACACGGGCGAGGAGGGAGGAGGAAGGGGAGCAGGGGTCGGAGG
TGGAGGAGGAGGAGGCAAGGGCAAAGGTCCTGCGACGTTGTGGGAGACCA
TCCATGTGCCCGAGGCTCAGGTACACAGAAGGGATCATCTGCACATACGA
TAACTGTCATTTACCCGACTCTCCTTTCCTCACATCTTTCTGCTCCTCAC
GTTCTTGATCATGTCCTTTGAACAGGCGCAAAGCGCAGTGTACGTGCCCG
TGGAACTCCTACCTAGCACCCACCACCGGCCCCCACCCTCGACACGGGGC
CAGAAGGCGACACCAAAAAGCCGTATCCAGAAAGGAGGATCACCGGCGGC
GGTTGCGGCAGTGGCGGCGCTGGCAAAGGTAGGCTTGGAGGGAGGATCAG
GGCGGGAAAAATGGGATTCGCGTCTTCTGGCTGCTCCTCTCATAGTACTC
ATCATACTCCTGTTTTAAAAACCAAAATCATAGCCCCGACGCCGCGTAGT
AGTGGAAGACGAGGATGAGGAGACTGATGAAGAGGATGAGGATGAGAAGA
AAGATGGCATGCGGCGGAAGCGGAAGAGCCCTGAGGGGGAGAAGGAAGGA
GCCAAGGAGGACGCGGTCGGGGCGGCTGTAGACAAGAAGGAGAATGAGAA
TGACGAGGATGAGGAGGAGGATGACGATAGGGTAGTAGAGGAAGAGGATG
AGGAGGTGGACGAGGACGACGACTATGCGATGAATCACTATATGAGTGAT
GACTATGATGGGGGGGGGACGGCGATGACGGCGGTGGGGAGAACGAGGCC
ATATTTTAGAGTGAGGGAAAAGCAGAAGGATAGTGTGTATAGTCAAAGAA
ATGTGAGGGAAAATGAGAATGCAGACTTCGCTCGTTGTTGCTGGTGGGGT
TTTGGGCATTTTTCGTCATATTAG
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Coding sequence (CDS) from alignment at chr5:8064..9837+

>NO05G00030.1 ID=NO05G00030.1|Name=NO05G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr5:8064..9837+ (Nannochloropsis oceanica)
ATGATGGGGCGTGGGCGCGGCCGGGGAGGGCGGTTCGGAGGCCGGGGGGG
CATGTCTGGTGGGGGCGGAGGGCTGACTGCTTTGGACCACTTGCGAGATA
CGGCTGAGGAAATGGGGCTGCCAGCCACAATGGGCTCGTCGCAGCAGGAG
CCCTTGCCCTCCTACCCATACATTCCCATCTACCCTCCAAAACCCTTGAC
GGAGGAGGAGGGCATCAAGATCCAGGCCCAGCGGGAGCTCGTGCACTGGT
GGCAGCAGTCAGTATACTACCTCAAGCCCGCCCCGCGCTCCAAAACAGTC
GTCAAGGAGATTGCCAGATACTCGGATAGATACAAACGCAACACGGGCGA
GGAGGGAGGAGGAAGGGGAGCAGGGGTCGGAGGTGGAGGAGGAGGAGGCA
AGGGCAAAGGTCCTGCGACGTTGTGGGAGACCATCCATGTGCCCGAGGCT
CAGGCGCAAAGCGCAGTGTACGTGCCCGTGGAACTCCTACCTAGCACCCA
CCACCGGCCCCCACCCTCGACACGGGGCCAGAAGGCGACACCAAAAAGCC
GTATCCAGAAAGGAGGATCACCGGCGGCGGTTGCGGCAGTGGCGGCGCTG
GCAAAGCCCCGACGCCGCGTAGTAGTGGAAGACGAGGATGAGGAGACTGA
TGAAGAGGATGAGGATGAGAAGAAAGATGGCATGCGGCGGAAGCGGAAGA
GCCCTGAGGGGGAGAAGGAAGGAGCCAAGGAGGACGCGGTCGGGGCGGCT
GTAGACAAGAAGGAGAATGAGAATGACGAGGATGAGGAGGAGGATGACGA
TAGGGTAGTAGAGGAAGAGGATGAGGAGGTGGACGAGGACGACGACTATG
CGATGAATCACTATATGAGTGATGACTATGATGGGGGGGGGACGGCGATG
ACGGCGGTGGGGAGAACGAGGCCATATTTTAGAGTGAGGGAAAAGCAGAA
GGATAGTGTGTATAGTCAAAGAAATGTGAGGGAAAATGAGAATGCAGACT
TCGCTCGTTGTTGCTGGTGGGGTTTTGGGCATTTTTCGTCATATTAG
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Synonyms
Publications