NO04G05180, NO04G05180 (gene) Nannochloropsis oceanica

Overview
NameNO04G05180
Unique NameNO04G05180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2474
Alignment locationchr4:1443518..1445991 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger ccch domain-containing protein 17
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1443518..1445991 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
Homology
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: EWM28914.1 (zinc finger ccch domain-containing protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 2.000e-13
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0 
Query:   40 NFLTDCYYYLNDMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNC 84
            N LTDC+YYL+D CTKGPDC+FRHNEHAKRN K+C TW QGG C
Sbjct:   40 NGLTDCFYYLSDKCTKGPDCAFRHNEHAKRNRKTCTTWAQGGKC 83
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_021650802.1 (zinc finger CCCH domain-containing protein 34-like [Hevea brasiliensis])

HSP 1 Score: 68.6 bits (166), Expect = 7.200e-8
Identity = 38/105 (36.19%), Postives = 45/105 (42.86%), Query Frame = 0 
Query:   43 TDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPT 146
            TDC Y+L     C KG DC +RHNE A+ N + C  W+ G      C FRHP                          C F+ SG C  G RCSF HD   + PT
Sbjct:   10 TDCVYFLASPLTCNKGMDCEYRHNEIARLNPRDCWYWLAGNCLNPTCGFRHP-PLEKHAEAPSESASSSPPAKKTNVPCYFYYSGFCNKGDRCSFMHDPDASTPT 113
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_005853767.1 (hypothetical protein NGA_0472400, partial [Nannochloropsis gaditana CCMP526] >EKU22594.1 hypothetical protein NGA_0472400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.2 bits (165), Expect = 9.400e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0 
Query:   40 NFLTDCYYYLNDMCTKGPDCSFRHNEHAKRNHKS 74
            N LTDC+YYL+D CTKGPDC+FRHNEHAKRN K+
Sbjct:    7 NGLTDCFYYLSDKCTKGPDCAFRHNEHAKRNRKT 40
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_016177777.1 (zinc finger CCCH domain-containing protein 32-like [Arachis ipaensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-7
Identity = 40/124 (32.26%), Postives = 51/124 (41.13%), Query Frame = 0 
Query:   43 TDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165
            TDC Y+L     C KG +C +RHNE A+ N + C  W+ G      C FRHP                          C FF +G C  G RCSF H H ++     H     +    G T+PP
Sbjct:   10 TDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHP-PLDGQTGVSSEPTQSAVPANKTMVPCYFFFNGYCNKGDRCSFLHGHDDS-----HFTVKPVKNDKGGTDPP 127
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_021650836.1 (zinc finger CCCH domain-containing protein 34-like [Hevea brasiliensis])

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-7
Identity = 38/105 (36.19%), Postives = 45/105 (42.86%), Query Frame = 0 
Query:   43 TDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPT 146
            TDC Y+L     C KG DC +RHNE A+ N + C  W+ G      C FRHP                          C F+ SG C  G RCSF HD   + PT
Sbjct:   10 TDCVYFLASPLTCKKGMDCEYRHNEIARLNPRDCWYWLAGNCLNPTCGFRHP-PLEKHAEAPSESASSSPPAKKPNVPCYFYYSGFCGKGDRCSFMHDPDASTPT 113
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_015944703.2 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like [Arachis duranensis])

HSP 1 Score: 67.0 bits (162), Expect = 2.100e-7
Identity = 40/124 (32.26%), Postives = 50/124 (40.32%), Query Frame = 0 
Query:   43 TDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165
            TDC Y+L     C KG +C +RHNE A+ N + C  W+ G      C FRHP                          C FF +G C  G RCSF H H  +     H     +    G T+PP
Sbjct:   10 TDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHP-PLDGQTGVSSEPTQSAVPANKTMVPCYFFFNGYCNKGDRCSFLHGHDES-----HFTVKPVKNDKGGTDPP 127
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: AAL24118.1 (unknown protein [Arabidopsis thaliana])

HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7
Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 0 
Query:   33 SSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---------GAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165
            SS+ E+A  + TDC Y+L     C KGP+C +RH+E+A+ N + C  W+ G     +C FRHP         G                         C FF  G C  G  CSF H    A     H   +   T    ++ P
Sbjct:   22 SSAEEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQCSKKP 165
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: AAM20729.1 (unknown protein, partial [Arabidopsis thaliana])

HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7
Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 0 
Query:   33 SSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---------GAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165
            SS+ E+A  + TDC Y+L     C KGP+C +RH+E+A+ N + C  W+ G     +C FRHP         G                         C FF  G C  G  CSF H    A     H   +   T    ++ P
Sbjct:   22 SSAEEDALEWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQCSKKP 165
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: NP_027420.1 (CCCH-type zinc finger family protein [Arabidopsis thaliana] >Q9ZUM0.1 RecName: Full=Zinc finger CCCH domain-containing protein 17; Short=AtC3H17 >AAC97218.1 expressed protein [Arabidopsis thaliana] >AAN41294.1 unknown protein [Arabidopsis thaliana] >AEC05554.1 CCCH-type zinc finger family protein [Arabidopsis thaliana])

HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7
Identity = 42/144 (29.17%), Postives = 57/144 (39.58%), Query Frame = 0 
Query:   33 SSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP---------GAXXXXXXXXXXXXXXXXXXXXXKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPP 165
            SS+ E+A  + TDC Y+L     C KGP+C +RH+E+A+ N + C  W+ G     +C FRHP         G                         C FF  G C  G  CSF H    A     H   +   T    ++ P
Sbjct:   22 SSAEEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQCSKKP 165
[Close]
BLAST of NO04G05180 vs. NCBI_GenBank
Match: XP_010424995.1 (PREDICTED: zinc finger CCCH domain-containing protein 17-like [Camelina sativa])

HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7
Identity = 44/145 (30.34%), Postives = 60/145 (41.38%), Query Frame = 0 
Query:   33 SSSAENA-NFLTDCYYYLND--MCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHP------GAXXXXXXXXXXXXXXXXXXXXXKAI-CKFFASGKCRNGARCSFRHDHRNAEPTTLHQAASLLCTTAGATEPPGPS 168
            SS+AE A  + TDC Y+L     C KGP+C +RH+E+A+ N + C  W+ G     +C FRHP      G                      + + C FF  G C  G  CSF H    A     H   +   T    ++ P  S
Sbjct:   26 SSAAEEALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCMNPKCGFRHPPLEGLLGIQGGAPAGSVQPTHATAQGVAKQPVPCVFFQKGMCVKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQISKKPAES 170
The following BLAST results are available for this feature:
BLAST of NO04G05180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM28914.12.000e-1377.27zinc finger ccch domain-containing protein 17 [Nan... [more]
XP_021650802.17.200e-836.19zinc finger CCCH domain-containing protein 34-like... [more]
XP_005853767.19.400e-879.41hypothetical protein NGA_0472400, partial [Nannoch... [more]
XP_016177777.11.600e-732.26zinc finger CCCH domain-containing protein 32-like... [more]
XP_021650836.11.600e-736.19zinc finger CCCH domain-containing protein 34-like... [more]
XP_015944703.22.100e-732.26LOW QUALITY PROTEIN: zinc finger CCCH domain-conta... [more]
AAL24118.13.600e-729.17unknown protein [Arabidopsis thaliana][more]
AAM20729.13.600e-729.17unknown protein, partial [Arabidopsis thaliana][more]
NP_027420.13.600e-729.17CCCH-type zinc finger family protein [Arabidopsis ... [more]
XP_010424995.13.600e-730.34PREDICTED: zinc finger CCCH domain-containing prot... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007586NSK007586Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05180.1NO04G05180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101494g2gene1696Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05180.1NO04G05180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05180 ID=NO04G05180|Name=NO04G05180|organism=Nannochloropsis oceanica|type=gene|length=2474bp
ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG
AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT
CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT
GACATGTGTACTAAGgtgagcaaagggagttggctcatcgaatttgtgcc
ggacatcttggttggcgctcaattttttgccgatctaataatctacctcc
tcctcccccttcactctccctctccctctgcagGGCCCCGACTGCTCGTT
CCGTCACAATGAGCATGCCAAGCGGAACCACAAATCGTGTAATACATGGA
TGCAAGGAGgtaggcgccctaagtgtgaagctatcacaagtctcactgaa
tgcccgcgttgccgtggtgatcccttcctccacctgccatcggcaacacc
gtcctcatacacttcccacccaccctccttccctcccttcttccctttct
tccctccttaaatcttacccattagGAAATTGCAAAGTTGAATGCTACTT
CCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGAGGAGAGGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGCTATCTGCAAgtacgtc
aagatgggagaggggggggaaagaaagaagaggggaagtgagtgagacga
tgaactgtgattttaaaacgtcggcatacgtggagaaagtgtcttaccca
gcccgccctccttccctccctccctccctccctccctccccccgccagAT
TTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCTCCTTCCGTCAC
GATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCGgtagggaggga
gggagggaggagagggagggagggagggatctgcctgtcggcgtcaaaca
tccacagctcatacatgaaggaggagaagactcacgtgataggcagtcgt
cgcacgcaccctcttgtacatacaaatgaccagcattgcgtccctccctc
cctcccttccttcctcccttccttcctccctccctccctccctccctccc
tccctccctccagGCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAAC
CCCCAGGACCGTCTGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGT
CTAGCTGGAACAGCAGCGGGGAGGATGGCCCCACAAGACGAgtaagtaga
tagagctcttctccctccctcctccctccctccttgtaaccctctaattc
ctttttcctcagtggtcccacactccttctctcctcctctccctcccccc
cgctctccccccctccgcccctccctagACGTGCCACCTCCATCCTTCGC
CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC
CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG
GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA
GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC
TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG
CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT
TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG
CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG
GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG
CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA
GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG
GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA
AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA
AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC
CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC
CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC
GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG
GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA
GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA
AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA
GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG
ATGGCGCTCCTGGAGAACGATTAG
back to top

protein sequence of NO04G05180.1

>NO04G05180.1-protein ID=NO04G05180.1-protein|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSYNGGGGGFRGHGGRGGGADPVHVKPWRPAPSSSAENANFLTDCYYYLN
DMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAAAPAAG
GEGGGGGGGGGGAGEKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQA
ASLLCTTAGATEPPGPSAEAGIAAAAAAGLAGTAAGRMAPQDERATSILR
RHSVSTTAAEAGVVQVTVRRREGGRGRGDGRGRGLLRPSAAAAAAAATAV
APSSSFSSSSDAPRSRPPCYPPPLPHPTPVAAAAAADPSPPPPSPPPSPI
SLSKTRKERFETFHVKSFEEVMAERQGGGDGGGGREGGGGRGEEEEEGGE
HGGRRTGDGEEEEEASKKRPLAIGKEAAAAAGAGAGTATAAAVSGGAASG
RGGGAAGGEGGAAAAAQGEIGVGSPQIPQEPLIPNTTNNKRQCLAPTPAA
LPPSLPLPSGGPEANFPLSVPVEPSRAEVVAERGVKGGKEEEDGQQGMEG
VGEAGGKGFGGEEWGKEGNEEEYYEEGEEAGEEREGQGQEEELDEDEAAL
MALLEND*
back to top
Synonyms
Publications