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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1443518..1445991 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G05180.1 vs.
Match: EWM28914.1 (zinc finger ccch domain-containing protein 17 [Nannochloropsis gaditana]) HSP 1 Score: 92.4 bits (228), Expect = 4.700e-15 Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 0
Query: 1 MSYN----GGGGGFRGH-----GGRGGGADPVHVKPWRPAPSSSAENANFLTDCYYYLNDMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNC 84
MSY GGGG +RG GGRGGG + W +++ + N LTDC+YYL+D CTKGPDC+FRHNEHAKRN K+C TW QGG C
Sbjct: 1 MSYKCGPGGGGGSYRGTDPGGGGGRGGGGG----QAW-----ATSIDINGLTDCFYYLSDKCTKGPDCAFRHNEHAKRNRKTCTTWAQGGKC 83
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT GACATGTGTACTAAGGGCCCCGACTGCTCGTTCCGTCACAATGAGCATGC CAAGCGGAACCACAAATCGTGTAATACATGGATGCAAGGAGGAAATTGCA AAGTTGAATGCTACTTCCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGA GGAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGC TATCTGCAAATTTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCT CCTTCCGTCACGATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCG GCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAACCCCCAGGACCGTC TGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGTCTAGCTGGAACAG CAGCGGGGAGGATGGCCCCACAAGACGAACGTGCCACCTCCATCCTTCGC CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG ATGGCGCTCCTGGAGAACGATTAG back to topprotein sequence of NO04G05180.1 >NO04G05180.1-protein ID=NO04G05180.1-protein|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp MSYNGGGGGFRGHGGRGGGADPVHVKPWRPAPSSSAENANFLTDCYYYLN DMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAAAPAAG GEGGGGGGGGGGAGEKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQA ASLLCTTAGATEPPGPSAEAGIAAAAAAGLAGTAAGRMAPQDERATSILR RHSVSTTAAEAGVVQVTVRRREGGRGRGDGRGRGLLRPSAAAAAAAATAV APSSSFSSSSDAPRSRPPCYPPPLPHPTPVAAAAAADPSPPPPSPPPSPI SLSKTRKERFETFHVKSFEEVMAERQGGGDGGGGREGGGGRGEEEEEGGE HGGRRTGDGEEEEEASKKRPLAIGKEAAAAAGAGAGTATAAAVSGGAASG RGGGAAGGEGGAAAAAQGEIGVGSPQIPQEPLIPNTTNNKRQCLAPTPAA LPPSLPLPSGGPEANFPLSVPVEPSRAEVVAERGVKGGKEEEDGQQGMEG VGEAGGKGFGGEEWGKEGNEEEYYEEGEEAGEEREGQGQEEELDEDEAAL MALLEND* back to topmRNA from alignment at chr4:1443518..1445991- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr4:1443518..1445991- (Nannochloropsis oceanica) ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG
AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT
CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT
GACATGTGTACTAAGGTGAGCAAAGGGAGTTGGCTCATCGAATTTGTGCC
GGACATCTTGGTTGGCGCTCAATTTTTTGCCGATCTAATAATCTACCTCC
TCCTCCCCCTTCACTCTCCCTCTCCCTCTGCAGGGCCCCGACTGCTCGTT
CCGTCACAATGAGCATGCCAAGCGGAACCACAAATCGTGTAATACATGGA
TGCAAGGAGGTAGGCGCCCTAAGTGTGAAGCTATCACAAGTCTCACTGAA
TGCCCGCGTTGCCGTGGTGATCCCTTCCTCCACCTGCCATCGGCAACACC
GTCCTCATACACTTCCCACCCACCCTCCTTCCCTCCCTTCTTCCCTTTCT
TCCCTCCTTAAATCTTACCCATTAGGAAATTGCAAAGTTGAATGCTACTT
CCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGAGGAGAGGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGCTATCTGCAAGTACGTC
AAGATGGGAGAGGGGGGGGAAAGAAAGAAGAGGGGAAGTGAGTGAGACGA
TGAACTGTGATTTTAAAACGTCGGCATACGTGGAGAAAGTGTCTTACCCA
GCCCGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCGCCAGAT
TTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCTCCTTCCGTCAC
GATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCGGTAGGGAGGGA
GGGAGGGAGGAGAGGGAGGGAGGGAGGGATCTGCCTGTCGGCGTCAAACA
TCCACAGCTCATACATGAAGGAGGAGAAGACTCACGTGATAGGCAGTCGT
CGCACGCACCCTCTTGTACATACAAATGACCAGCATTGCGTCCCTCCCTC
CCTCCCTTCCTTCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCAGGCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAAC
CCCCAGGACCGTCTGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGT
CTAGCTGGAACAGCAGCGGGGAGGATGGCCCCACAAGACGAGTAAGTAGA
TAGAGCTCTTCTCCCTCCCTCCTCCCTCCCTCCTTGTAACCCTCTAATTC
CTTTTTCCTCAGTGGTCCCACACTCCTTCTCTCCTCCTCTCCCTCCCCCC
CGCTCTCCCCCCCTCCGCCCCTCCCTAGACGTGCCACCTCCATCCTTCGC
CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC
CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG
GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA
GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC
TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG
CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT
TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG
CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG
GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG
CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA
GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG
GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA
AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA
AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC
CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC
CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC
GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG
GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA
GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA
AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA
GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG
ATGGCGCTCCTGGAGAACGATTAG back to topCoding sequence (CDS) from alignment at chr4:1443518..1445991- >NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr4:1443518..1445991- (Nannochloropsis oceanica) ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT GACATGTGTACTAAGGGCCCCGACTGCTCGTTCCGTCACAATGAGCATGC CAAGCGGAACCACAAATCGTGTAATACATGGATGCAAGGAGGAAATTGCA AAGTTGAATGCTACTTCCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGA GGAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGC TATCTGCAAATTTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCT CCTTCCGTCACGATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCG GCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAACCCCCAGGACCGTC TGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGTCTAGCTGGAACAG CAGCGGGGAGGATGGCCCCACAAGACGAACGTGCCACCTCCATCCTTCGC CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG ATGGCGCTCCTGGAGAACGATTAG back to top
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