NO04G05180.1, NO04G05180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05180.1
Unique NameNO04G05180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr4:1443518..1445991 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1443518..1445991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G05180.1 vs.
Match: EWM28914.1 (zinc finger ccch domain-containing protein 17 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 4.700e-15
Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 0
Query:    1 MSYN----GGGGGFRGH-----GGRGGGADPVHVKPWRPAPSSSAENANFLTDCYYYLNDMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNC 84
            MSY     GGGG +RG      GGRGGG      + W     +++ + N LTDC+YYL+D CTKGPDC+FRHNEHAKRN K+C TW QGG C
Sbjct:    1 MSYKCGPGGGGGSYRGTDPGGGGGRGGGGG----QAW-----ATSIDINGLTDCFYYLSDKCTKGPDCAFRHNEHAKRNRKTCTTWAQGGKC 83          
The following BLAST results are available for this feature:
BLAST of NO04G05180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28914.14.700e-1554.35zinc finger ccch domain-containing protein 17 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05180NO04G05180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05180.1NO04G05180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05180.1.cds1NO04G05180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05180.1.cds2NO04G05180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05180.1.cds3NO04G05180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05180.1.cds4NO04G05180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05180.1.cds5NO04G05180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05180.1.cds6NO04G05180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG
AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT
CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT
GACATGTGTACTAAGGGCCCCGACTGCTCGTTCCGTCACAATGAGCATGC
CAAGCGGAACCACAAATCGTGTAATACATGGATGCAAGGAGGAAATTGCA
AAGTTGAATGCTACTTCCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGA
GGAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGC
TATCTGCAAATTTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCT
CCTTCCGTCACGATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCG
GCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAACCCCCAGGACCGTC
TGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGTCTAGCTGGAACAG
CAGCGGGGAGGATGGCCCCACAAGACGAACGTGCCACCTCCATCCTTCGC
CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC
CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG
GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA
GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC
TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG
CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT
TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG
CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG
GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG
CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA
GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG
GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA
AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA
AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC
CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC
CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC
GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG
GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA
GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA
AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA
GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG
ATGGCGCTCCTGGAGAACGATTAG
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protein sequence of NO04G05180.1

>NO04G05180.1-protein ID=NO04G05180.1-protein|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSYNGGGGGFRGHGGRGGGADPVHVKPWRPAPSSSAENANFLTDCYYYLN
DMCTKGPDCSFRHNEHAKRNHKSCNTWMQGGNCKVECYFRHPGAAAPAAG
GEGGGGGGGGGGAGEKAICKFFASGKCRNGARCSFRHDHRNAEPTTLHQA
ASLLCTTAGATEPPGPSAEAGIAAAAAAGLAGTAAGRMAPQDERATSILR
RHSVSTTAAEAGVVQVTVRRREGGRGRGDGRGRGLLRPSAAAAAAAATAV
APSSSFSSSSDAPRSRPPCYPPPLPHPTPVAAAAAADPSPPPPSPPPSPI
SLSKTRKERFETFHVKSFEEVMAERQGGGDGGGGREGGGGRGEEEEEGGE
HGGRRTGDGEEEEEASKKRPLAIGKEAAAAAGAGAGTATAAAVSGGAASG
RGGGAAGGEGGAAAAAQGEIGVGSPQIPQEPLIPNTTNNKRQCLAPTPAA
LPPSLPLPSGGPEANFPLSVPVEPSRAEVVAERGVKGGKEEEDGQQGMEG
VGEAGGKGFGGEEWGKEGNEEEYYEEGEEAGEEREGQGQEEELDEDEAAL
MALLEND*
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mRNA from alignment at chr4:1443518..1445991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at chr4:1443518..1445991- (Nannochloropsis oceanica)
ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT GACATGTGTACTAAGGTGAGCAAAGGGAGTTGGCTCATCGAATTTGTGCC GGACATCTTGGTTGGCGCTCAATTTTTTGCCGATCTAATAATCTACCTCC TCCTCCCCCTTCACTCTCCCTCTCCCTCTGCAGGGCCCCGACTGCTCGTT CCGTCACAATGAGCATGCCAAGCGGAACCACAAATCGTGTAATACATGGA TGCAAGGAGGTAGGCGCCCTAAGTGTGAAGCTATCACAAGTCTCACTGAA TGCCCGCGTTGCCGTGGTGATCCCTTCCTCCACCTGCCATCGGCAACACC GTCCTCATACACTTCCCACCCACCCTCCTTCCCTCCCTTCTTCCCTTTCT TCCCTCCTTAAATCTTACCCATTAGGAAATTGCAAAGTTGAATGCTACTT CCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGAGGAGAGGGAGGAGGAG GAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGCTATCTGCAAGTACGTC AAGATGGGAGAGGGGGGGGAAAGAAAGAAGAGGGGAAGTGAGTGAGACGA TGAACTGTGATTTTAAAACGTCGGCATACGTGGAGAAAGTGTCTTACCCA GCCCGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCGCCAGAT TTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCTCCTTCCGTCAC GATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCGGTAGGGAGGGA GGGAGGGAGGAGAGGGAGGGAGGGAGGGATCTGCCTGTCGGCGTCAAACA TCCACAGCTCATACATGAAGGAGGAGAAGACTCACGTGATAGGCAGTCGT CGCACGCACCCTCTTGTACATACAAATGACCAGCATTGCGTCCCTCCCTC CCTCCCTTCCTTCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC TCCCTCCCTCCAGGCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAAC CCCCAGGACCGTCTGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGT CTAGCTGGAACAGCAGCGGGGAGGATGGCCCCACAAGACGAGTAAGTAGA TAGAGCTCTTCTCCCTCCCTCCTCCCTCCCTCCTTGTAACCCTCTAATTC CTTTTTCCTCAGTGGTCCCACACTCCTTCTCTCCTCCTCTCCCTCCCCCC CGCTCTCCCCCCCTCCGCCCCTCCCTAGACGTGCCACCTCCATCCTTCGC CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG ATGGCGCTCCTGGAGAACGATTAG
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Coding sequence (CDS) from alignment at chr4:1443518..1445991-

>NO04G05180.1 ID=NO04G05180.1|Name=NO04G05180.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr4:1443518..1445991- (Nannochloropsis oceanica)
ATGAGCTACAACGGGGGAGGCGGGGGGTTTAGGGGGCATGGAGGTAGGGG
AGGAGGCGCAGACCCTGTCCATGTTAAGCCGTGGAGACCTGCGCCGTCGT
CCTCAGCTGAAAACGCCAACTTTTTGACTGACTGCTACTACTATTTAAAT
GACATGTGTACTAAGGGCCCCGACTGCTCGTTCCGTCACAATGAGCATGC
CAAGCGGAACCACAAATCGTGTAATACATGGATGCAAGGAGGAAATTGCA
AAGTTGAATGCTACTTCCGTCATCCTGGCGCTGCTGCACCCGCAGCTGGA
GGAGAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGAGAAAGC
TATCTGCAAATTTTTCGCATCGGGGAAGTGTCGCAATGGAGCTCGATGCT
CCTTCCGTCACGATCATCGAAACGCCGAGCCTACCACACTGCACCAGGCG
GCCTCCCTCCTGTGTACTACCGCTGGCGCGACAGAACCCCCAGGACCGTC
TGCAGAAGCAGGAATAGCGGCAGCAGCAGCGGCAGGTCTAGCTGGAACAG
CAGCGGGGAGGATGGCCCCACAAGACGAACGTGCCACCTCCATCCTTCGC
CGTCATTCGGTCTCCACCACGGCCGCGGAGGCCGGGGTAGTCCAAGTCAC
CGTTCGAAGGAGGGAGGGAGGGAGGGGTCGAGGCGACGGGCGAGGGCGAG
GTCTACTCCGGCCTTCTGCTGCAGCAGCTGCTGCTGCTGCTACTGCTGTA
GCGCCGTCCTCCTCCTTCTCCTCCTCCTCCGATGCCCCTCGAAGCCGCCC
TCCTTGCTACCCTCCCCCTCTACCTCACCCTACTCCTGTTGCCGCTGCCG
CTGCTGCTGATCCTTCTCCTCCACCTCCTTCTCCTCCTCCTTCTCCTATT
TCTCTCAGCAAGACAAGGAAAGAGAGATTTGAAACTTTCCACGTAAAGAG
CTTCGAGGAGGTGATGGCAGAAAGACAAGGAGGAGGAGATGGAGGAGGGG
GAAGGGAAGGAGGAGGAGGAAGAGGAGAGGAAGAGGAAGAAGGAGGAGAG
CATGGTGGAAGGAGAACAGGAGATGGAGAAGAGGAAGAAGAAGCGAGCAA
GAAGAGACCACTCGCGATTGGGAAGGAGGCAGCAGCGGCAGCAGGAGCAG
GAGCAGGAACAGCAACAGCTGCAGCAGTGTCAGGAGGAGCAGCATCAGGA
AGAGGTGGAGGAGCAGCAGGAGGAGAAGGAGGAGCAGCAGCAGCAGCACA
AGGAGAAATAGGTGTAGGCTCACCACAGATCCCGCAAGAGCCTTTAATTC
CTAATACCACAAATAATAAGCGGCAATGCCTCGCACCTACACCTGCAGCC
CTCCCTCCCTCCCTCCCTCTTCCCTCAGGAGGCCCTGAGGCAAATTTTCC
GTTGTCTGTCCCTGTCGAACCATCAAGGGCTGAGGTGGTGGCTGAGAGAG
GGGTGAAGGGAGGGAAGGAAGAGGAAGATGGGCAGCAAGGGATGGAAGGA
GTAGGAGAAGCAGGAGGAAAAGGGTTTGGTGGGGAAGAGTGGGGGAAGGA
AGGGAATGAGGAAGAGTATTATGAAGAAGGTGAAGAGGCGGGGGAGGAGA
GGGAGGGCCAAGGGCAGGAGGAAGAGCTGGATGAGGACGAGGCAGCGCTG
ATGGCGCTCCTGGAGAACGATTAG
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Synonyms
Publications