NO04G05030, NO04G05030 (gene) Nannochloropsis oceanica

Overview
NameNO04G05030
Unique NameNO04G05030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3832
Alignment locationchr4:1398844..1402675 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1398844..1402675 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G05030 vs. NCBI_GenBank
Match: EWM28925.1 (hypothetical protein Naga_100142g11 [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 5.300e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0 
Query:  192 VDRVRDRGVHHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
            VDRVRDR VHH  RG  + +  ++++LP TD ECKFDV+ SV +R  VC P E+C FQ++ GD+M+DR CRLK
Sbjct:   19 VDRVRDRVVHHAARGLASILRRVRSRLPSTDAECKFDVVTSVGERTTVCVPRETCAFQYRFGDVMLDRCCRLK 91
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BLAST of NO04G05030 vs. NCBI_GenBank
Match: CBJ32490.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 0 
Query:  110 RLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCRLRTKETXXXXXXXXXXXXXXLKLVKAAWAGVVEGVGCVWLKVDRVRDRGVHHTVRGFKAAVG------NLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
            RL P +D  CDWSW + +C P  SC++K R GD   GRSCRLR +                         G  E   C     +R  D  +   +  F   VG        +  +P TDK+C+F +  S+ ++K+VC P   C F +K GD+   R+CRL+
Sbjct:  110 RLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPE-------------------------GERELATC---DPERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242
[Close]
BLAST of NO04G05030 vs. NCBI_GenBank
Match: EWM25789.1 (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana])

HSP 1 Score: 63.9 bits (154), Expect = 8.400e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:  101 LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCRLRT 154
            L  L +   R  PS+   CDW W  L+CAP   C+F  +LGD H+GRSCRLRT
Sbjct:  243 LGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRT 295
The following BLAST results are available for this feature:
BLAST of NO04G05030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28925.15.300e-1756.16hypothetical protein Naga_100142g11 [Nannochlorops... [more]
CBJ32490.11.100e-1432.30conserved unknown protein [Ectocarpus siliculosus][more]
EWM25789.18.400e-750.94hypothetical protein Naga_100021g75, partial [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007615NSK007615Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05030.1NO04G05030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668944gene_2295Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100142g11gene1678Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05030.1NO04G05030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05030 ID=NO04G05030|Name=NO04G05030|organism=Nannochloropsis oceanica|type=gene|length=3832bp
CTGCTGCTGCTGCTGCTGCTGCTCTTGTCGCCCCCCTCCCCCTCTCATTC
TTCCCATATCTACAGAGGACGCAAAAGGACGCATCACTCCTTTTTTCCCT
CCTTCCCTTCCTCCCTGCCTTTCTGCCTCTTCTAGCCGAGCCACTCGTTT
TTCTAATTGTTGTTTCCCATGTTGTAAAGCTGTGAGCCGATTCACTAGGC
GGGTGGCGAGGGCGAGGAGGAGGGAGGGCGGGATGGAGGGCGAGTTTGGG
TGAAACGAGGAGATTAAAGTTTGTTCCTCCGCGGAGGTGAGGATGAAGGA
TAATAAAGAGGAGGAAAGGAGGGATGAGGAGGAGGAGGAGGAGAAGGAGC
TATCGCAGGCCTGGAGGGCGCCGAGGAAGGCCACCACGTCTTGAGGGGTG
GGAGAAAAGGAGACGGAGGAAGAGGGAGGGGGGGAAGGAGGGGCTGAGAC
CGGAGCAGTCGCTGGTGCGCTGGTGGGACGACGGCGTGCTTGCGATGGAG
GAGGAGGAGGCTGGGAGCGGGTAGGTGGAGAGGGGGTGGAGGAAGAAGTG
GAGGAAGAGGGGGGAGAGCGAAGAGAAGGAGAAGACTTGCGACTTTTTGT
TTCAGCTGGCCCGGACGACGAGGAGGAGAACCGGACGGAGGAAGAGGAGG
AGGGAGGGCGGGAAGGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCC
GACCCATTTCGTTGCTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTG
CAGGCGTCGTTCAAACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCG
CATCTGAGTGGGCGGTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGG
GAGGGAAATGGGGGAAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGA
GGCGGAGGAAGAGAAGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAG
TGCTGCTGCTATTGCTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTG
CTATTTCCCTTGCCCTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAA
CGATGACGAAAATGATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTA
CTTCCCCTCCTCCTTCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAA
AAGAATGAAGAGGAAGGCGACCTACTGGAGCCGGTGCTGCAATTTAATAC
TACCGGTCTCGCTCCCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATA
CCCCCATTCGGTCTGTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCC
TCCCTCCCTTCCTCCTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGG
GGATTGCAGGATGGCTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGAT
ATCTTTCAGGGTCCTTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGG
GGAGAAGGGGAAGAGGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGA
GCTTGAGGGAAGGGAAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTAT
CGTCGTCTTCTGAGCAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCC
GGTGACCCGAGGCCGCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGG
AGGGGAGGAGGAGGAACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGC
TCGGGGGCCGACAGGTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTT
TAATTGATGGTGTCTCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTAT
AGTGCTGCGTGGAATGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGG
AAAGAAGCTTTCGCTGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAG
ACGATGAGGCGAGCTCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTA
CGATGGAGGACAAGAAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTG
TGAGTTGTCGTTTGTTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTG
GTCGTGCATGCTTCTTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTG
ACGAAATGCAACGAGGAAAAGGAGACACGTTCCTTGTCATGATACATCGC
CTTACCCGAGTGCGAAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCC
TTCGCATAAACATTCAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAG
AACATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCG
GAGGAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCT
TTGGGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGgtacgtggcgct
ccctccctcctctcccctcccctttccctcgctctccgccacttccattg
ccctctcgccctcgatgtaaaccatgcattagctctccattaaagcacaa
tccaattattgtgctgcgctctgctcctcttcactaataggtcgataatt
tctttatcctctcatcgctagtaccgtcaatgccccacgcgcatcctcta
catattttccacacctatctcttaccatcagccttccttactcctaccta
cgtatgctcacctttgtctttttctttctcctgttctccaccctttcttc
agACGCATGCCAGCGAGCCTCACTATGCAGACAACCTTACTACCGCTGCT
AATGACACCGCTGAGGATACGTTTCCCGCCACATTCGACGAAACGAAGCT
CGGCGCCGACCTCCTGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACA
CCAGCATTGCCGCCGTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTC
CTCCCGTCGTCGGACGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTG
TGCGCCCAGCGAGTCCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATT
TGGGCCGCTCTTGCCGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAG
AAGGAGGGAAGGAGGGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTG
GGCGGGAGTCGTGGAGGGGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCG
TGAGGGATAGGGGGGTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTG
GGCAATCTGAAGGCCAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGA
TGTCATCAAAAGCGTGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGA
GCTGTGTGTTTCAGTTCAAAGCGGGCGACATGATGATGGACCGGGCGTGC
CGTTTAAAATAAGACCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGT
AGGAGAGCAGCGGGAGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTA
AAGGGTCACACCGAGAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAAT
CGTGTTTGTATGTACATAGAATGTAAACAACACAAAGTGCAAAGGAAAAA
AAGCAAATCTTTTTAGAGACAGCGGCATGAGGCATAATAATTGGTGATGA
GCGCGAGGTAGAGAAGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGG
AAGAGGAGAAATTTAATCTCGATGGGCACGTGCACGCTGTCGGTCGCACG
CCAGCAACGAATAAGACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACT
ACGCGACAGGTATACATAAACCGACAAACAAACAGTCTCTCGACAAACAA
GAAAGAAACCCATGCAAGGCTTGTGCTCAAAA
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protein sequence of NO04G05030.1

>NO04G05030.1-protein ID=NO04G05030.1-protein|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MARSSRRSSRSSNRSRRSGSRSSSSKRNRALIFGAVALISALLVLTHASE
PHYADNLTTAANDTAEDTFPATFDETKLGADLLPINTSSPRKSNTSIAAV
LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCR
LRTKETEKEGEKEGRRERRALKLVKAAWAGVVEGVGCVWLKVDRVRDRGV
HHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQF
KAGDMMMDRACRLK*
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Synonyms
Publications