NO04G05030.1, NO04G05030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G05030.1
Unique Name	NO04G05030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3518
Alignment location	chr4:1398844..1402675 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1398844..1402675 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G05030.1 vs.
Match: EWM28925.1 (hypothetical protein Naga_100142g11 [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 5.300e-17
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 0

Query:  192 VDRVRDRGVHHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQFKAGDMMMDRACRLK 265
            VDRVRDR VHH  RG  + +  ++++LP TD ECKFDV+ SV +R  VC P E+C FQ++ GD+M+DR CRLK
Sbjct:   19 VDRVRDRVVHHAARGLASILRRVRSRLPSTDAECKFDVVTSVGERTTVCVPRETCAFQYRFGDVMLDRCCRLK 91

The following BLAST results are available for this feature:

BLAST of NO04G05030.1 vs.

BLAST of NO04G05030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28925.1	5.300e-17	56.16	hypothetical protein Naga_100142g11 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G05030	NO04G05030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05030.1	NO04G05030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G05030.1.cds1	NO04G05030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G05030.1.cds2	NO04G05030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:1398844..1402675+
coding sequence from alignment at chr4:1398844..1402675+

mRNA sequence

>NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3518bp
CTGCTGCTGCTGCTGCTGCTGCTCTTGTCGCCCCCCTCCCCCTCTCATTC
TTCCCATATCTACAGAGGACGCAAAAGGACGCATCACTCCTTTTTTCCCT
CCTTCCCTTCCTCCCTGCCTTTCTGCCTCTTCTAGCCGAGCCACTCGTTT
TTCTAATTGTTGTTTCCCATGTTGTAAAGCTGTGAGCCGATTCACTAGGC
GGGTGGCGAGGGCGAGGAGGAGGGAGGGCGGGATGGAGGGCGAGTTTGGG
TGAAACGAGGAGATTAAAGTTTGTTCCTCCGCGGAGGTGAGGATGAAGGA
TAATAAAGAGGAGGAAAGGAGGGATGAGGAGGAGGAGGAGGAGAAGGAGC
TATCGCAGGCCTGGAGGGCGCCGAGGAAGGCCACCACGTCTTGAGGGGTG
GGAGAAAAGGAGACGGAGGAAGAGGGAGGGGGGGAAGGAGGGGCTGAGAC
CGGAGCAGTCGCTGGTGCGCTGGTGGGACGACGGCGTGCTTGCGATGGAG
GAGGAGGAGGCTGGGAGCGGGTAGGTGGAGAGGGGGTGGAGGAAGAAGTG
GAGGAAGAGGGGGGAGAGCGAAGAGAAGGAGAAGACTTGCGACTTTTTGT
TTCAGCTGGCCCGGACGACGAGGAGGAGAACCGGACGGAGGAAGAGGAGG
AGGGAGGGCGGGAAGGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCC
GACCCATTTCGTTGCTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTG
CAGGCGTCGTTCAAACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCG
CATCTGAGTGGGCGGTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGG
GAGGGAAATGGGGGAAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGA
GGCGGAGGAAGAGAAGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAG
TGCTGCTGCTATTGCTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTG
CTATTTCCCTTGCCCTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAA
CGATGACGAAAATGATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTA
CTTCCCCTCCTCCTTCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAA
AAGAATGAAGAGGAAGGCGACCTACTGGAGCCGGTGCTGCAATTTAATAC
TACCGGTCTCGCTCCCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATA
CCCCCATTCGGTCTGTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCC
TCCCTCCCTTCCTCCTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGG
GGATTGCAGGATGGCTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGAT
ATCTTTCAGGGTCCTTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGG
GGAGAAGGGGAAGAGGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGA
GCTTGAGGGAAGGGAAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTAT
CGTCGTCTTCTGAGCAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCC
GGTGACCCGAGGCCGCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGG
AGGGGAGGAGGAGGAACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGC
TCGGGGGCCGACAGGTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTT
TAATTGATGGTGTCTCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTAT
AGTGCTGCGTGGAATGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGG
AAAGAAGCTTTCGCTGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAG
ACGATGAGGCGAGCTCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTA
CGATGGAGGACAAGAAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTG
TGAGTTGTCGTTTGTTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTG
GTCGTGCATGCTTCTTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTG
ACGAAATGCAACGAGGAAAAGGAGACACGTTCCTTGTCATGATACATCGC
CTTACCCGAGTGCGAAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCC
TTCGCATAAACATTCAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAG
AACATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCG
GAGGAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCT
TTGGGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGC
GAGCCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGA
GGATACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCC
TGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCC
GTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGA
CGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGT
CCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGC
CGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAG
GGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGG
AGGGGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGG
GTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGC
CAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCG
TGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAG
TTCAAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAAGA
CCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGTAGGAGAGCAGCGGG
AGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTAAAGGGTCACACCGA
GAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAATCGTGTTTGTATGTA
CATAGAATGTAAACAACACAAAGTGCAAAGGAAAAAAAGCAAATCTTTTT
AGAGACAGCGGCATGAGGCATAATAATTGGTGATGAGCGCGAGGTAGAGA
AGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGGAAGAGGAGAAATTT
AATCTCGATGGGCACGTGCACGCTGTCGGTCGCACGCCAGCAACGAATAA
GACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACTACGCGACAGGTATA
CATAAACCGACAAACAAACAGTCTCTCGACAAACAAGAAAGAAACCCATG
CAAGGCTTGTGCTCAAAA

protein sequence of NO04G05030.1

>NO04G05030.1-protein ID=NO04G05030.1-protein|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MARSSRRSSRSSNRSRRSGSRSSSSKRNRALIFGAVALISALLVLTHASE
PHYADNLTTAANDTAEDTFPATFDETKLGADLLPINTSSPRKSNTSIAAV
LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCR
LRTKETEKEGEKEGRRERRALKLVKAAWAGVVEGVGCVWLKVDRVRDRGV
HHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQF
KAGDMMMDRACRLK*

mRNA from alignment at chr4:1398844..1402675+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3832bp|location=Sequence derived from alignment at chr4:1398844..1402675+ (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTCTTGTCGCCCCCCTCCCCCTCTCATTC
TTCCCATATCTACAGAGGACGCAAAAGGACGCATCACTCCTTTTTTCCCT
CCTTCCCTTCCTCCCTGCCTTTCTGCCTCTTCTAGCCGAGCCACTCGTTT
TTCTAATTGTTGTTTCCCATGTTGTAAAGCTGTGAGCCGATTCACTAGGC
GGGTGGCGAGGGCGAGGAGGAGGGAGGGCGGGATGGAGGGCGAGTTTGGG
TGAAACGAGGAGATTAAAGTTTGTTCCTCCGCGGAGGTGAGGATGAAGGA
TAATAAAGAGGAGGAAAGGAGGGATGAGGAGGAGGAGGAGGAGAAGGAGC
TATCGCAGGCCTGGAGGGCGCCGAGGAAGGCCACCACGTCTTGAGGGGTG
GGAGAAAAGGAGACGGAGGAAGAGGGAGGGGGGGAAGGAGGGGCTGAGAC
CGGAGCAGTCGCTGGTGCGCTGGTGGGACGACGGCGTGCTTGCGATGGAG
GAGGAGGAGGCTGGGAGCGGGTAGGTGGAGAGGGGGTGGAGGAAGAAGTG
GAGGAAGAGGGGGGAGAGCGAAGAGAAGGAGAAGACTTGCGACTTTTTGT
TTCAGCTGGCCCGGACGACGAGGAGGAGAACCGGACGGAGGAAGAGGAGG
AGGGAGGGCGGGAAGGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCC
GACCCATTTCGTTGCTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTG
CAGGCGTCGTTCAAACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCG
CATCTGAGTGGGCGGTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGG
GAGGGAAATGGGGGAAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGA
GGCGGAGGAAGAGAAGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAG
TGCTGCTGCTATTGCTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTG
CTATTTCCCTTGCCCTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAA
CGATGACGAAAATGATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTA
CTTCCCCTCCTCCTTCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAA
AAGAATGAAGAGGAAGGCGACCTACTGGAGCCGGTGCTGCAATTTAATAC
TACCGGTCTCGCTCCCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATA
CCCCCATTCGGTCTGTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCC
TCCCTCCCTTCCTCCTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGG
GGATTGCAGGATGGCTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGAT
ATCTTTCAGGGTCCTTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGG
GGAGAAGGGGAAGAGGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGA
GCTTGAGGGAAGGGAAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTAT
CGTCGTCTTCTGAGCAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCC
GGTGACCCGAGGCCGCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGG
AGGGGAGGAGGAGGAACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGC
TCGGGGGCCGACAGGTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTT
TAATTGATGGTGTCTCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTAT
AGTGCTGCGTGGAATGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGG
AAAGAAGCTTTCGCTGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAG
ACGATGAGGCGAGCTCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTA
CGATGGAGGACAAGAAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTG
TGAGTTGTCGTTTGTTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTG
GTCGTGCATGCTTCTTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTG
ACGAAATGCAACGAGGAAAAGGAGACACGTTCCTTGTCATGATACATCGC
CTTACCCGAGTGCGAAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCC
TTCGCATAAACATTCAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAG
AACATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCG
GAGGAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCT
TTGGGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGGTACGTGGCGCT
CCCTCCCTCCTCTCCCCTCCCCTTTCCCTCGCTCTCCGCCACTTCCATTG
CCCTCTCGCCCTCGATGTAAACCATGCATTAGCTCTCCATTAAAGCACAA
TCCAATTATTGTGCTGCGCTCTGCTCCTCTTCACTAATAGGTCGATAATT
TCTTTATCCTCTCATCGCTAGTACCGTCAATGCCCCACGCGCATCCTCTA
CATATTTTCCACACCTATCTCTTACCATCAGCCTTCCTTACTCCTACCTA
CGTATGCTCACCTTTGTCTTTTTCTTTCTCCTGTTCTCCACCCTTTCTTC
AGACGCATGCCAGCGAGCCTCACTATGCAGACAACCTTACTACCGCTGCT
AATGACACCGCTGAGGATACGTTTCCCGCCACATTCGACGAAACGAAGCT
CGGCGCCGACCTCCTGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACA
CCAGCATTGCCGCCGTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTC
CTCCCGTCGTCGGACGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTG
TGCGCCCAGCGAGTCCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATT
TGGGCCGCTCTTGCCGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAG
AAGGAGGGAAGGAGGGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTG
GGCGGGAGTCGTGGAGGGGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCG
TGAGGGATAGGGGGGTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTG
GGCAATCTGAAGGCCAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGA
TGTCATCAAAAGCGTGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGA
GCTGTGTGTTTCAGTTCAAAGCGGGCGACATGATGATGGACCGGGCGTGC
CGTTTAAAATAAGACCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGT
AGGAGAGCAGCGGGAGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTA
AAGGGTCACACCGAGAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAAT
CGTGTTTGTATGTACATAGAATGTAAACAACACAAAGTGCAAAGGAAAAA
AAGCAAATCTTTTTAGAGACAGCGGCATGAGGCATAATAATTGGTGATGA
GCGCGAGGTAGAGAAGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGG
AAGAGGAGAAATTTAATCTCGATGGGCACGTGCACGCTGTCGGTCGCACG
CCAGCAACGAATAAGACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACT
ACGCGACAGGTATACATAAACCGACAAACAAACAGTCTCTCGACAAACAA
GAAAGAAACCCATGCAAGGCTTGTGCTCAAAA

Coding sequence (CDS) from alignment at chr4:1398844..1402675+

>NO04G05030.1 ID=NO04G05030.1|Name=NO04G05030.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr4:1398844..1402675+ (Nannochloropsis oceanica)
ATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAG
GAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTG
GGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGCGAG
CCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGAGGA
TACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCCTGC
CCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCCGTA
CTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGACGT
GGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGTCCT
GTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGCCGC
CTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAGGGA
GCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGGAGG
GGGTAGGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGGGTG
CACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGCCAA
ACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCGTGG
CGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAGTTC
AAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAA

Synonyms

Publications