NO04G04900, NO04G04900 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G04900 vs. NCBI_GenBank
Match: EWM28882.1 (ribosomal protein l15 [Nannochloropsis gaditana]) HSP 1 Score: 486.9 bits (1252), Expect = 4.600e-134 Identity = 254/302 (84.11%), Postives = 278/302 (92.05%), Query Frame = 0 Query: 1 MGGRRILLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGGVRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVEGILALLDKEEAITEQEEAEGKYVDIPRPGGARERIRAEIRQEDKEAYARLANA 303 MGGRRIL+ALA IPAVAGFMLSG FKGQQS SL+RP+ A R+GAGSLTMRLFDHKRR++KFIEDI G P G+EGHKEP++TNLRPFPGNYPK+HRKGR XXXXXXXXX MRGQNSRGGVRPGFEGGQT YRR+PKWPGRPMGPGH RTRYALV++EHLNEAA+ FP+RTIIDPGFLLDQ V++KQKL+LFKVVGGD+PLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEG++V+ ILA LDKEEA TE EEAEGKYVD+PRPGGARERIRAEIR+EDKEAYARL NA Sbjct: 1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRXXXXXXXXXXXXXMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302
BLAST of NO04G04900 vs. NCBI_GenBank
Match: XP_005710602.1 (hypothetical protein CHC_T00012001001 [Chondrus crispus] >CDF40308.1 hypothetical protein CHC_T00012001001 [Chondrus crispus]) HSP 1 Score: 145.6 bits (366), Expect = 2.500e-31 Identity = 98/214 (45.79%), Postives = 124/214 (57.94%), Query Frame = 0 Query: 49 TMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRG--GVRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVEGILALLDKEEA 261 T +LFD K+R +D T A P E+ LTNLRP PG XXX +GMRGQ SR GVRPGFEGGQT YRR PK+ GRPMGPGH +T YAL+K+E LN E +++ L +++KQK +++KVVGG+ + LTV AH FT SA AIE AGG CVL+SPTT + + E + E + + EEA Sbjct: 44 TAKLFDWKKR-----QDATYADLPPED-EGIFTLTNLRPAPGXXXXXXXXXXXXXXXQGGSCGFGMRGQKSRSGRGVRPGFEGGQTPLYRRIPKFVGRPMGPGHKKTEYALMKIEFLNGCEE----GSVVTFEGLKAMGIMTKQKRKIYKVVGGEDLTVKNLTVKAHAFTTSAVDAIEGAGGTCVLVSPTTGKDIVFEEEEDEEVATESETEEA 247
BLAST of NO04G04900 vs. NCBI_GenBank
Match: CBJ29509.1 (Chloroplast 50S ribosomal protein L15 [Ectocarpus siliculosus]) HSP 1 Score: 143.7 bits (361), Expect = 9.600e-31 Identity = 106/245 (43.27%), Postives = 128/245 (52.24%), Query Frame = 0 Query: 9 ALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEG--HKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRG--GVRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVE 250 AL + F F GQQ L TS R+ G +TM++FD KRRE E+G + L+P PG+ + RKGRG +GMRGQ SR GVR GFEGGQ YRR PK GRPMGPGHT+ ++ L+KL+ LN E ++ L V+K K KVVGG T LTV AHGFT SA AIEA GGKC LLSPTTNEV+ M+ + E Sbjct: 9 ALFCVGVANAFFAPTAFTGQQ---LTAGTSAPSRTTTG-VTMKIFDWKRRE-------------SEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDE----GATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
BLAST of NO04G04900 vs. NCBI_GenBank
Match: OEU19086.1 (ribosomal protein L15 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 141.7 bits (356), Expect = 3.600e-30 Identity = 97/239 (40.59%), Postives = 125/239 (52.30%), Query Frame = 0 Query: 6 ILLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFK-VVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 242 +L+ALA + A S F SL T +TM+L+D KRR+ A + E L NLRP PG+ R RKGRG +GMRGQ SR G RPGFEGGQT YRR PK+ GRPMGPGH++ +Y ++KL+ LN + ++ + L V+K K + K VVG D + +TV AH FT +A AIE AGGKC LL P+T EV+ Sbjct: 8 VLIALAGLVA-----SSDAFSTFMGSSLRTSVPTTNAGNGDGMTMKLYDWKRRD-------ADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNV----DSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
BLAST of NO04G04900 vs. NCBI_GenBank
Match: XP_009038076.1 (hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens] >EGB07464.1 hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens]) HSP 1 Score: 141.0 bits (354), Expect = 6.200e-30 Identity = 93/210 (44.29%), Postives = 122/210 (58.10%), Query Frame = 0 Query: 37 TSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGG---DIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 242 T+ + +L+M+L+D KRRE +E+ G A E + N+R PG ++ RKGRG +GMRGQ SR G R GFEGGQT YRR PK GRP GPGHT ++L+KL L+ + +D L+++ +V+K K ++ KVVG D+PL LTV AH FT SA + IEAAGGKCVLLS TTNEV+ Sbjct: 25 TARVATTRGSALSMKLYDWKRRE--SVEE-AGVDA------FEFRVDNIRSAPGATKRKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRAGFEGGQTPLYRRLPKLVGRPTGPGHTNEVFSLIKLGQLS----TLEPNSEVDYAALMEKGLVTKAKQDILKVVGSASDDVPLPEGLTVKAHAFTQSAQSKIEAAGGKCVLLSKTTNEVL 221
BLAST of NO04G04900 vs. NCBI_GenBank
Match: GAX15628.1 (hypothetical protein FisN_3Hh100 [Fistulifera solaris]) HSP 1 Score: 139.0 bits (349), Expect = 2.400e-29 Identity = 94/238 (39.50%), Postives = 129/238 (54.20%), Query Frame = 0 Query: 10 LAAIPAVAGFMLSGGFKGQQSHSLVRPTS--TAQRSGAGSLTMRLFDHKRR--EIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 242 L+ I A+ F S + +++ V ++ ++ + L M++FD KRR + + D+ E L NL+P PG+ ++ RKGRG +GMRGQ SR G RPGFEGGQ YRR PK+ G+P GPGH +T Y ++ + L +AA + + LL+ +V+K K +L KVV G LTV AH FT SA AIEAAGGKC LLSPTTN V+ Sbjct: 5 LSVIAALLSF--SASLRASDAYAFVHRSNGLSSVPKSSSCLKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLLESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVI 227
BLAST of NO04G04900 vs. NCBI_GenBank
Match: EJK64574.1 (hypothetical protein THAOC_14683 [Thalassiosira oceanica]) HSP 1 Score: 137.1 bits (344), Expect = 9.000e-29 Identity = 95/238 (39.92%), Postives = 128/238 (53.78%), Query Frame = 0 Query: 7 LLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLT-RPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 242 ++ LAA+ A A GF +L P+ S L+M+L+D KRR T + + E L +++P PG+ ++ RKGRG +GMRGQ +R G RPGFEGGQ YRR PK+ GRP GPGH +T Y L+KL+ +N E + + L++ +K KL++ KVV G T + +TV AH FT SA AIE AGGK VLLS TTNEV+ Sbjct: 3 VVLLAALAATA-----SGFSSFTPRNL--PSHAVTSSSPSQLSMKLYDWKRR--------TADESAVNDLETEWTLGSIKPAPGSRKRKQRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFTGRPTGPGHQKTEYNLIKLDDINGCEE----GSTVSFESLIETGATTKAKLDIHKVVVGREEFTAKGVTVQAHAFTKSAQEAIEGAGGKAVLLSKTTNEVL 221
BLAST of NO04G04900 vs. NCBI_GenBank
Match: XP_005538206.1 (chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D] >BAM82170.1 chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 137.1 bits (344), Expect = 9.000e-29 Identity = 79/178 (44.38%), Postives = 104/178 (58.43%), Query Frame = 0 Query: 72 PGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSR--GGVRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVD 248 P E ++ L NL P PG+ ++ RKGRG YGMRGQ SR G +RPGFEGGQ YRR PK+ GRP GP H R Y V ++ LN AE +++ P L++ + + L+LFK++G R LTV AH F++SA IE AGG+CVLLSPTT + +E+ D Sbjct: 83 PEEIANENFTLGNLAPAPGSVHRKKRKGRGIAAGQGGSCGYGMRGQKSRSGGSIRPGFEGGQMPLYRRIPKYRGRPPGPSHRRIEYQPVNVKALNTCAE----GSVVTPHVLIETGAIHRTNLKLFKILGDGEITVRNLTVKAHAFSSSAVRKIEEAGGRCVLLSPTTGKDIELPSED 256
BLAST of NO04G04900 vs. NCBI_GenBank
Match: GAX19156.1 (hypothetical protein FisN_3Lh100 [Fistulifera solaris]) HSP 1 Score: 136.3 bits (342), Expect = 1.500e-28 Identity = 87/198 (43.94%), Postives = 111/198 (56.06%), Query Frame = 0 Query: 48 LTMRLFDHKRR--EIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 242 L M++FD KRR + + D+ E L NL+P PG+ ++ RKGRG +GMRGQ SR G RPGFEGGQ YRR PK+ G+P GPGH +T Y ++ + L +AA + + L + +V+K K +L KVV G LTV AH FT SA AIEAAGGKC LLSPTTN V+ Sbjct: 43 LKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLYESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVI 227
BLAST of NO04G04900 vs. NCBI_GenBank
Match: XP_002178213.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49878.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 132.9 bits (333), Expect = 1.700e-27 Identity = 80/168 (47.62%), Postives = 104/168 (61.90%), Query Frame = 0 Query: 79 EPNLTNLRPFPGNYPKRHRKGRGHXXXXXXXXXYGMRGQNSRGG--VRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVV--GGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 243 E L NL+P PG+ + RKGRG +GMRGQ SR G R GFEGGQT YRR PK+ GR GPGHT+T Y ++ + L +A + + + LL+ +++K K +L KVV G+ + LTV AHGFT SA AAIE+AGGKC +LSPTTN+V+E Sbjct: 2 EFTLDNLKPAPGSRQNKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRSGFEGGQTPLYRRLPKFVGRATGPGHTKTIYNIISTDSLEKA----QSGSTVSFESLLENGLITKSKFKLHKVVLGKGESAVASNLTVQAHGFTKSAQAAIESAGGKCEVLSPTTNKVLE 165 The following BLAST results are available for this feature:
BLAST of NO04G04900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G04900 ID=NO04G04900|Name=NO04G04900|organism=Nannochloropsis oceanica|type=gene|length=1325bpback to top protein sequence of NO04G04900.1 >NO04G04900.1-protein ID=NO04G04900.1-protein|Name=NO04G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bpback to top Synonyms
Publications
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