NO04G04900.1, NO04G04900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04900.1
Unique NameNO04G04900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length909
Alignment locationchr4:1351183..1352507 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1351183..1352507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04900.1 vs.
Match: EWM28882.1 (ribosomal protein l15 [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 3.000e-141
Identity = 257/302 (85.10%), Postives = 282/302 (93.38%), Query Frame = 0 
Query:    1 MGGRRILLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTMRLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGRGHAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTTQYRRSPKWPGRPMGPGHTRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGGDIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVEGILALLDKEEAITEQEEAEGKYVDIPRPGGARERIRAEIRQEDKEAYARLANA 303
            MGGRRIL+ALA IPAVAGFMLSG FKGQQS SL+RP+  A R+GAGSLTMRLFDHKRR++KFIEDI G P  G+EGHKEP++TNLRPFPGNYPK+HRKGRG+AGGGGGSSGYGMRGQNSRGGVRPGFEGGQT  YRR+PKWPGRPMGPGH RTRYALV++EHLNEAA+ FP+RTIIDPGFLLDQ V++KQKL+LFKVVGGD+PLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEG++V+ ILA LDKEEA TE EEAEGKYVD+PRPGGARERIRAEIR+EDKEAYARL NA
Sbjct:    1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302
The following BLAST results are available for this feature:
BLAST of NO04G04900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28882.13.000e-14185.10ribosomal protein l15 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04900NO04G04900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04900.1NO04G04900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04900.1.cds1NO04G04900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04900.1.cds2NO04G04900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04900.1 ID=NO04G04900.1|Name=NO04G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
ATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCCGTAGC
AGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAACAATCTCACTCCCTCG
TCCGTCCTACCAGCACCGCCCAACGCTCCGGTGCGGGGTCCCTGACCATG
CGTCTCTTCGATCACAAGCGTCGTGAGATTAAGTTCATCGAAGATATCAC
AGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAGGAGCCGAACCTGACCA
ACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCGCCACCGAAAGGGCCGC
GGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGATATGGAATGCGTGGTCA
GAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAGGGAGGGCAGACGACGC
AGTATCGACGTTCGCCCAAATGGCCGGGGCGTCCCATGGGCCCGGGTCAT
ACCCGTACGAGGTATGCACTGGTGAAGTTGGAGCATTTGAACGAGGCGGC
GGAGCTGTTCCCAACGCGCACGATCATCGACCCTGGCTTTTTGCTGGATC
AGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTTCAAGGTGGTTGGGGGC
GACATCCCTCTCACGCGGCCTTTGACGGTGTTGGCGCACGGTTTCACGGC
CTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGAAAGTGCGTGCTCTTGT
CGCCTACGACGAATGAGGTGGTGGAGATGGAGGGGGTGGACGTGGAGGGG
ATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCACTGAGCAGGAGGAGGC
CGAGGGAAAATATGTGGATATCCCCCGTCCGGGAGGAGCACGGGAGAGGA
TCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGCGTATGCCCGGCTAGCC
AATGCGTAA
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protein sequence of NO04G04900.1

>NO04G04900.1-protein ID=NO04G04900.1-protein|Name=NO04G04900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MGGRRILLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTM
RLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGR
GHAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTTQYRRSPKWPGRPMGPGH
TRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGG
DIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVEG
ILALLDKEEAITEQEEAEGKYVDIPRPGGARERIRAEIRQEDKEAYARLA
NA*
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mRNA from alignment at chr4:1351183..1352507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04900.1 ID=NO04G04900.1|Name=NO04G04900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at chr4:1351183..1352507+ (Nannochloropsis oceanica)
ATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCCGTAGC
AGGTATGTAACACGAGAAGAGGAGGAGGAGAGGAGGCAGGGAGGGAGGGA
GGAGAGCAACAGCACGTATGGGTAGGAGGGATAGACCGACGTATATGCTG
TGCACGCTTAGCTCGTGGGGGGACTCTGATAGCTACTATCGCATGCGTTT
AGGCACGATGCTTAAGAGTTTAGGTCCATTCTGTCTCGTAACCACGGGTT
GGATGCTGGATTGGACGCTTGAGGAGGAAGAGGACCTGGTGGCGCTGTAC
GTTAGCGCGTCCTCATTTCCCAGCCTACAACCACCGCCGCGGTCCCAACA
GAGAGCATGCTCTTACTTTTGGTCTCGAGGGACAATCATGTCGCCAGGTC
TCTCTCTCCTCATCTGTCTTACCCCTGATCTAATCCACCCTTCCTTGCTT
TCCCTCCCTTCGAACCAGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAA
CAATCTCACTCCCTCGTCCGTCCTACCAGCACCGCCCAACGCTCCGGTGC
GGGGTCCCTGACCATGCGTCTCTTCGATCACAAGCGTCGTGAGATTAAGT
TCATCGAAGATATCACAGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAG
GAGCCGAACCTGACCAACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCG
CCACCGAAAGGGCCGCGGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGAT
ATGGAATGCGTGGTCAGAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAG
GGAGGGCAGACGACGCAGTATCGACGTTCGCCCAAATGGCCGGGGCGTCC
CATGGGCCCGGGTCATACCCGTACGAGGTATGCACTGGTGAAGTTGGAGC
ATTTGAACGAGGCGGCGGAGCTGTTCCCAACGCGCACGATCATCGACCCT
GGCTTTTTGCTGGATCAGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTT
CAAGGTGGTTGGGGGCGACATCCCTCTCACGCGGCCTTTGACGGTGTTGG
CGCACGGTTTCACGGCCTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGA
AAGTGCGTGCTCTTGTCGCCTACGACGAATGAGGTGGTGGAGATGGAGGG
GGTGGACGTGGAGGGGATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCA
CTGAGCAGGAGGAGGCCGAGGGAAAATATGTGGATATCCCCCGTCCGGGA
GGAGCACGGGAGAGGATCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGC
GTATGCCCGGCTAGCCAATGCGTAA
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Coding sequence (CDS) from alignment at chr4:1351183..1352507+

>NO04G04900.1 ID=NO04G04900.1|Name=NO04G04900.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr4:1351183..1352507+ (Nannochloropsis oceanica)
ATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCCGTAGC
AGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAACAATCTCACTCCCTCG
TCCGTCCTACCAGCACCGCCCAACGCTCCGGTGCGGGGTCCCTGACCATG
CGTCTCTTCGATCACAAGCGTCGTGAGATTAAGTTCATCGAAGATATCAC
AGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAGGAGCCGAACCTGACCA
ACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCGCCACCGAAAGGGCCGC
GGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGATATGGAATGCGTGGTCA
GAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAGGGAGGGCAGACGACGC
AGTATCGACGTTCGCCCAAATGGCCGGGGCGTCCCATGGGCCCGGGTCAT
ACCCGTACGAGGTATGCACTGGTGAAGTTGGAGCATTTGAACGAGGCGGC
GGAGCTGTTCCCAACGCGCACGATCATCGACCCTGGCTTTTTGCTGGATC
AGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTTCAAGGTGGTTGGGGGC
GACATCCCTCTCACGCGGCCTTTGACGGTGTTGGCGCACGGTTTCACGGC
CTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGAAAGTGCGTGCTCTTGT
CGCCTACGACGAATGAGGTGGTGGAGATGGAGGGGGTGGACGTGGAGGGG
ATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCACTGAGCAGGAGGAGGC
CGAGGGAAAATATGTGGATATCCCCCGTCCGGGAGGAGCACGGGAGAGGA
TCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGCGTATGCCCGGCTAGCC
AATGCGTAA
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Synonyms
Publications