NO04G04780, NO04G04780 (gene) Nannochloropsis oceanica

Overview
NameNO04G04780
Unique NameNO04G04780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr4:1302777..1304657 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1302777..1304657 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04780 vs. NCBI_GenBank
Match: EWM28876.1 (hypothetical protein Naga_100095g14 [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 1.400e-55
Identity = 141/358 (39.39%), Postives = 208/358 (58.10%), Query Frame = 0 
Query:   55 SIRTRGDWNDRE-------QDSVDREAWPRGSQIDETRTLYFQGQLREYIQDMADSFILQEIEARLADKPYKELASYYEGKSEMAKYTLDHEVGRMAYRVI-DSMATGNGGAVAADCGFGALESDCCSRSSVAITP-RLSLSPP-----------LLLAENDPPSIRAAYAMHPHLFSWRLANQSLFAELLQEIQFSFIRADLEVGVVSKNSQFVLDVGRDRLKGVSMFYVLLAAAEEGPVEVARIEGVVSVDVQKECWTHKLRLVKLQPVFDDVLRKVAEALARHEGDGRXXXXXXXXXXXWGGTPRVPLAF--DGLREAGQGLLQAVTTVGRMIEDAAIAADEEEGGREERREYGK 391
            ++    +W+D E         + D  + P    +DE R  +FQGQL++YIQD+AD +ILQEIE+ LA K YK+   Y+  K  MA+YTLDHE+ RM+Y+++  S A         D    + + +    S+    P   S+S P            +LAE+DP SIRA +A+     +WR ANQ LFA++L+ IQ  F RADLEVGVVS++S+FV+DV  D ++G ++F++ LA   +GPVEVAR++G + V+V+K+C    ++L++L PVFDD L +VA AL +HE   +           W  T   PL      +  AG+GL+QAVTTVG+++E+ A      E   +ER + GK
Sbjct:   46 NVTEEDEWDDWETTKEPILSSTSDCSSSPLQPTLDEARVKFFQGQLQKYIQDLADPYILQEIESDLAKKHYKDFIEYFTDKPHMAQYTLDHELTRMSYKLVRSSGAPDRHHTYQDDMIVESYQRNSRKDSNYQHGPVDFSVSNPTEGNEFPVPKLYVLAEDDPASIRAIHAICAQNLTWRFANQILFADMLETIQRRFFRADLEVGVVSRDSKFVVDVDADSVEGTAIFHISLAGGTDGPVEVARLQGRIKVEVKKQCLVQCVKLMRLLPVFDDTLARVASALVKHEHGAQEGREGEEGGWGWKTTSHFPLTTLKKEMLAAGEGLMQAVTTVGKVLEEVA-----AEAALDERLQQGK 398
The following BLAST results are available for this feature:
BLAST of NO04G04780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28876.11.400e-5539.39hypothetical protein Naga_100095g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009297NSK009297Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04780.1NO04G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628381gene_2265Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100095g14gene1734Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04780.1NO04G04780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04780 ID=NO04G04780|Name=NO04G04780|organism=Nannochloropsis oceanica|type=gene|length=1881bp
ATGGTTACCGTGACAACAGTCGATGAGAACGAAGACGGACTCGACTTGAT
CCTCCGCGAGCTCGCCCTCCAACCTCCATCAACAGCATCCACGACAGCAC
CACCGCGCACGACCACAACAAGCATGACGACAATAACCATAGCGACAACG
AAGGATCGCGAAAGCATACGAACCAGAGGGGACTGGAACGATCGGGAACA
AGACTCTGTAGACAGAGAGGCTTGGCCACGGGGATCCCAAATTGATGAGA
CCCGTACCCTTTATTTTCAAGGACAGCTCCGAGAATACATTCAGGACATG
GCAGATTCCTTCATTTTGCAGGAAATCGAAGCTCGTCTGGCCGATAAGCC
GTACAAGGAGCTTGCGAGCTACTATGAGGGCAAATCTGAGATGGCGAAGT
ACACCCTGGACCATGAGGTGGGGCGAATGGCGTACCGAGTCATTGACAGC
ATGGCGACGGGAAATGGGGGGGCCGTGGCTGCTGATTGTGGTTTTGGTGC
TCTCGAGAGTGACTGCTGCAGCCGCAGCTCTGTAGCCATCACTCCCAGAC
TTTCACTGTCCCCTCCTCTTCTCCTTGCCGAGAATGACCCCCCCTCCATC
CGCGCCGCCTACGCCATGCACCCGCATCTCTTTTCCTGGCGCTTAGCCAA
TCAAAGCCTTTTCGCTGAGCTCCTTCAAGAAATACAATTCAGTTTTATTA
GAGCTGATTTAGAGGTAGGCGTTGTAAGTAAAAATTCTCAATTCGTGCTC
GACGTGGGAAGGGATAGGTTGAAGGGAGTATCGATGTTTTATGTCTTGCT
AGCGGCAGCAGAAGAGGGACCTGTGGAGGTGGCGAGGATTGAAGGGGTGG
TGTCCGTTGATGTGCAAAAAGAGTGCTGGACGCACAAATTAAGGCTCGTG
AAGCTTCAGCCTGTCTTTGACGATGTCTTGAGGAAAGTGGCAGAGGCCCT
AGCAAGGCATGAGGGAGACGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAG
GAAGATGGTGGGGGGGAACGCCGCGAGTGCCATTGGCATTTGACGGCTTG
AGGGAGGCAGGGCAGGGGTTGTTGCAGGCAGTGACAACAGTGGGTAGGAT
GATTGAAGACGCGGCGATAGCTGCTGATGAGGAGGAGGGAGGGAGGGAGG
AAAGGAGGGAATACGGGAAGAGAGGCAATGAGAAGCTCCTAAAAACGTCC
GGGACGCGGACCCACCCCAAGTGGGGGAATGGAACAGGGATGGATGCTGT
AGAGGGAGGGAAGGAGGAGGGAAGGGAGAAAGGGGCCAGTGAATTTCTGA
GCGGATGGCCTGATTTGATATGGGCGGAGGGGAAGTCCCCTAGTCCTACT
TTTACTGTTCCTGCTGCTGCTGCTACGCCACTCGACGTTTCGGATGCGGC
TGCTGCAGCATGGTCTGGTGTAGAGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGGG
GGAGGCCTATGGCGGTTCTTGCAATATAGCGGAGACATGCAGCCAGCACA
TACTTCCTCTTCCAAGTTACACCAGCAGGAGCACCAGGAGCAGCAACGGC
AACAGCAGCAGCAGGAGGTGCAGCAGGAGGCGCAGCAGGAGCAGCAGCAG
GAGGAGGGGGAGGAGGAGCAGCAGGAGGAGGACGAGGACAGACCGTCGTT
ATTCTTGGGAGGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAG
TGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAG
GGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTT
GCGACGACGGGACGCAGCGGAAAGGGAGTGA
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protein sequence of NO04G04780.1

>NO04G04780.1-protein ID=NO04G04780.1-protein|Name=NO04G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MVTVTTVDENEDGLDLILRELALQPPSTASTTAPPRTTTTSMTTITIATT
KDRESIRTRGDWNDREQDSVDREAWPRGSQIDETRTLYFQGQLREYIQDM
ADSFILQEIEARLADKPYKELASYYEGKSEMAKYTLDHEVGRMAYRVIDS
MATGNGGAVAADCGFGALESDCCSRSSVAITPRLSLSPPLLLAENDPPSI
RAAYAMHPHLFSWRLANQSLFAELLQEIQFSFIRADLEVGVVSKNSQFVL
DVGRDRLKGVSMFYVLLAAAEEGPVEVARIEGVVSVDVQKECWTHKLRLV
KLQPVFDDVLRKVAEALARHEGDGRGREGGREGGRWWGGTPRVPLAFDGL
REAGQGLLQAVTTVGRMIEDAAIAADEEEGGREERREYGKRGNEKLLKTS
GTRTHPKWGNGTGMDAVEGGKEEGREKGASEFLSGWPDLIWAEGKSPSPT
FTVPAAAATPLDVSDAAAAAWSGVEGGGGGGGGGGGGGGGGGGGGGGRGG
GGLWRFLQYSGDMQPAHTSSSKLHQQEHQEQQRQQQQQEVQQEAQQEQQQ
EEGEEEQQEEDEDRPSLFLGGPPSGYLKGFMTGVGGFIVRGVEAAMTEDE
GGREGRRKSELGLGELLRRRDAAERE*
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Synonyms
Publications