NO04G04780.1, NO04G04780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04780.1
Unique NameNO04G04780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr4:1302777..1304657 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1302777..1304657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04780.1 vs.
Match: EWM28876.1 (hypothetical protein Naga_100095g14 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 2.600e-46
Identity = 186/516 (36.05%), Postives = 270/516 (52.33%), Query Frame = 0 
Query:    9 ENEDGLDLILRELALQPPSTASTTAPPRTTTTSMTTITIATTKDRESIRTRGDWNDRE-------QDSVDREAWPRGSQIDETRTLYFQGQLREYIQDMADSFILQEIEARLADKPYKELASYYEGKSEMAKYTLDHEVGRMAYRVIDSM-ATGNGGAVAADCGFGALESDCCSRSSVAITP-RLSLSPPL-----------LLAENDPPSIRAAYAMHPHLFSWRLANQSLFAELLQEIQFSFIRADLEVGVVSKNSQFVLDVGRDRLKGVSMFYVLLAAAEEGPVEVARIEGVVSVDVQKECWTHKLRLVKLQPVFDDVLRKVAEALARHE-GDGRGREGGREGGRWWGGTPRVPLAF--DGLREAGQGLLQAVTTVGRMIEDAA--IAADE--EEGGREERREYGKRGNEKLLKTSGTRTHPKWGNGTGMDAVEGG-----KEEGREKGASEFLSGWPDLIWAEGKSPSPTFTVPAAAATPLDVSDAAAAAWSGVEGGGGGGGGGGGGGGGGG 493
            +++DGLD +L E A+         AP  ++   M     A   +  ++    +W+D E         + D  + P    +DE R  +FQGQL++YIQD+AD +ILQEIE+ LA K YK+   Y+  K  MA+YTLDHE+ RM+Y+++ S  A         D    + + +    S+    P   S+S P            +LAE+DP SIRA +A+     +WR ANQ LFA++L+ IQ  F RADLEVGVVS++S+FV+DV  D ++G ++F++ LA   +GPVEVAR++G + V+V+K+C    ++L++L PVFDD L +VA AL +HE G   GRE G EGG  W  T   PL      +  AG+GL+QAVTTVG+++E+ A   A DE  ++G   E  E      E+L    G+   P+ G      + +GG       + REKG      G        G+ P+            L    A+ +   GV GG G   G  G   G G
Sbjct:   12 DHKDGLDSLLEECAV-------FVAPHPSSDEKM-----APDSNCMNVTEEDEWDDWETTKEPILSSTSDCSSSPLQPTLDEARVKFFQGQLQKYIQDLADPYILQEIESDLAKKHYKDFIEYFTDKPHMAQYTLDHELTRMSYKLVRSSGAPDRHHTYQDDMIVESYQRNSRKDSNYQHGPVDFSVSNPTEGNEFPVPKLYVLAEDDPASIRAIHAICAQNLTWRFANQILFADMLETIQRRFFRADLEVGVVSRDSKFVVDVDADSVEGTAIFHISLAGGTDGPVEVARLQGRIKVEVKKQCLVQCVKLMRLLPVFDDTLARVASALVKHEHGAQEGRE-GEEGGWGWKTTSHFPLTTLKKEMLAAGEGLMQAVTTVGKVLEEVAAEAALDERLQQGKGPESPEESCSIEEEL---KGSTDDPRRGCTFARGSEKGGGIVHVARDKREKGREGGQEG--------GRGPTGA----------LGWLQASESMLEGVVGGLGSLIGASGSQSGFG 493
The following BLAST results are available for this feature:
BLAST of NO04G04780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28876.12.600e-4636.05hypothetical protein Naga_100095g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04780NO04G04780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04780.1NO04G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04780.1.cds1NO04G04780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04780.1 ID=NO04G04780.1|Name=NO04G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ATGGTTACCGTGACAACAGTCGATGAGAACGAAGACGGACTCGACTTGAT
CCTCCGCGAGCTCGCCCTCCAACCTCCATCAACAGCATCCACGACAGCAC
CACCGCGCACGACCACAACAAGCATGACGACAATAACCATAGCGACAACG
AAGGATCGCGAAAGCATACGAACCAGAGGGGACTGGAACGATCGGGAACA
AGACTCTGTAGACAGAGAGGCTTGGCCACGGGGATCCCAAATTGATGAGA
CCCGTACCCTTTATTTTCAAGGACAGCTCCGAGAATACATTCAGGACATG
GCAGATTCCTTCATTTTGCAGGAAATCGAAGCTCGTCTGGCCGATAAGCC
GTACAAGGAGCTTGCGAGCTACTATGAGGGCAAATCTGAGATGGCGAAGT
ACACCCTGGACCATGAGGTGGGGCGAATGGCGTACCGAGTCATTGACAGC
ATGGCGACGGGAAATGGGGGGGCCGTGGCTGCTGATTGTGGTTTTGGTGC
TCTCGAGAGTGACTGCTGCAGCCGCAGCTCTGTAGCCATCACTCCCAGAC
TTTCACTGTCCCCTCCTCTTCTCCTTGCCGAGAATGACCCCCCCTCCATC
CGCGCCGCCTACGCCATGCACCCGCATCTCTTTTCCTGGCGCTTAGCCAA
TCAAAGCCTTTTCGCTGAGCTCCTTCAAGAAATACAATTCAGTTTTATTA
GAGCTGATTTAGAGGTAGGCGTTGTAAGTAAAAATTCTCAATTCGTGCTC
GACGTGGGAAGGGATAGGTTGAAGGGAGTATCGATGTTTTATGTCTTGCT
AGCGGCAGCAGAAGAGGGACCTGTGGAGGTGGCGAGGATTGAAGGGGTGG
TGTCCGTTGATGTGCAAAAAGAGTGCTGGACGCACAAATTAAGGCTCGTG
AAGCTTCAGCCTGTCTTTGACGATGTCTTGAGGAAAGTGGCAGAGGCCCT
AGCAAGGCATGAGGGAGACGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAG
GAAGATGGTGGGGGGGAACGCCGCGAGTGCCATTGGCATTTGACGGCTTG
AGGGAGGCAGGGCAGGGGTTGTTGCAGGCAGTGACAACAGTGGGTAGGAT
GATTGAAGACGCGGCGATAGCTGCTGATGAGGAGGAGGGAGGGAGGGAGG
AAAGGAGGGAATACGGGAAGAGAGGCAATGAGAAGCTCCTAAAAACGTCC
GGGACGCGGACCCACCCCAAGTGGGGGAATGGAACAGGGATGGATGCTGT
AGAGGGAGGGAAGGAGGAGGGAAGGGAGAAAGGGGCCAGTGAATTTCTGA
GCGGATGGCCTGATTTGATATGGGCGGAGGGGAAGTCCCCTAGTCCTACT
TTTACTGTTCCTGCTGCTGCTGCTACGCCACTCGACGTTTCGGATGCGGC
TGCTGCAGCATGGTCTGGTGTAGAGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGGG
GGAGGCCTATGGCGGTTCTTGCAATATAGCGGAGACATGCAGCCAGCACA
TACTTCCTCTTCCAAGTTACACCAGCAGGAGCACCAGGAGCAGCAACGGC
AACAGCAGCAGCAGGAGGTGCAGCAGGAGGCGCAGCAGGAGCAGCAGCAG
GAGGAGGGGGAGGAGGAGCAGCAGGAGGAGGACGAGGACAGACCGTCGTT
ATTCTTGGGAGGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAG
TGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAG
GGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTT
GCGACGACGGGACGCAGCGGAAAGGGAGTGA
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protein sequence of NO04G04780.1

>NO04G04780.1-protein ID=NO04G04780.1-protein|Name=NO04G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MVTVTTVDENEDGLDLILRELALQPPSTASTTAPPRTTTTSMTTITIATT
KDRESIRTRGDWNDREQDSVDREAWPRGSQIDETRTLYFQGQLREYIQDM
ADSFILQEIEARLADKPYKELASYYEGKSEMAKYTLDHEVGRMAYRVIDS
MATGNGGAVAADCGFGALESDCCSRSSVAITPRLSLSPPLLLAENDPPSI
RAAYAMHPHLFSWRLANQSLFAELLQEIQFSFIRADLEVGVVSKNSQFVL
DVGRDRLKGVSMFYVLLAAAEEGPVEVARIEGVVSVDVQKECWTHKLRLV
KLQPVFDDVLRKVAEALARHEGDGRGREGGREGGRWWGGTPRVPLAFDGL
REAGQGLLQAVTTVGRMIEDAAIAADEEEGGREERREYGKRGNEKLLKTS
GTRTHPKWGNGTGMDAVEGGKEEGREKGASEFLSGWPDLIWAEGKSPSPT
FTVPAAAATPLDVSDAAAAAWSGVEGGGGGGGGGGGGGGGGGGGGGGRGG
GGLWRFLQYSGDMQPAHTSSSKLHQQEHQEQQRQQQQQEVQQEAQQEQQQ
EEGEEEQQEEDEDRPSLFLGGPPSGYLKGFMTGVGGFIVRGVEAAMTEDE
GGREGRRKSELGLGELLRRRDAAERE*
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mRNA from alignment at chr4:1302777..1304657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04780.1 ID=NO04G04780.1|Name=NO04G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr4:1302777..1304657- (Nannochloropsis oceanica)
ATGGTTACCGTGACAACAGTCGATGAGAACGAAGACGGACTCGACTTGAT
CCTCCGCGAGCTCGCCCTCCAACCTCCATCAACAGCATCCACGACAGCAC
CACCGCGCACGACCACAACAAGCATGACGACAATAACCATAGCGACAACG
AAGGATCGCGAAAGCATACGAACCAGAGGGGACTGGAACGATCGGGAACA
AGACTCTGTAGACAGAGAGGCTTGGCCACGGGGATCCCAAATTGATGAGA
CCCGTACCCTTTATTTTCAAGGACAGCTCCGAGAATACATTCAGGACATG
GCAGATTCCTTCATTTTGCAGGAAATCGAAGCTCGTCTGGCCGATAAGCC
GTACAAGGAGCTTGCGAGCTACTATGAGGGCAAATCTGAGATGGCGAAGT
ACACCCTGGACCATGAGGTGGGGCGAATGGCGTACCGAGTCATTGACAGC
ATGGCGACGGGAAATGGGGGGGCCGTGGCTGCTGATTGTGGTTTTGGTGC
TCTCGAGAGTGACTGCTGCAGCCGCAGCTCTGTAGCCATCACTCCCAGAC
TTTCACTGTCCCCTCCTCTTCTCCTTGCCGAGAATGACCCCCCCTCCATC
CGCGCCGCCTACGCCATGCACCCGCATCTCTTTTCCTGGCGCTTAGCCAA
TCAAAGCCTTTTCGCTGAGCTCCTTCAAGAAATACAATTCAGTTTTATTA
GAGCTGATTTAGAGGTAGGCGTTGTAAGTAAAAATTCTCAATTCGTGCTC
GACGTGGGAAGGGATAGGTTGAAGGGAGTATCGATGTTTTATGTCTTGCT
AGCGGCAGCAGAAGAGGGACCTGTGGAGGTGGCGAGGATTGAAGGGGTGG
TGTCCGTTGATGTGCAAAAAGAGTGCTGGACGCACAAATTAAGGCTCGTG
AAGCTTCAGCCTGTCTTTGACGATGTCTTGAGGAAAGTGGCAGAGGCCCT
AGCAAGGCATGAGGGAGACGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAG
GAAGATGGTGGGGGGGAACGCCGCGAGTGCCATTGGCATTTGACGGCTTG
AGGGAGGCAGGGCAGGGGTTGTTGCAGGCAGTGACAACAGTGGGTAGGAT
GATTGAAGACGCGGCGATAGCTGCTGATGAGGAGGAGGGAGGGAGGGAGG
AAAGGAGGGAATACGGGAAGAGAGGCAATGAGAAGCTCCTAAAAACGTCC
GGGACGCGGACCCACCCCAAGTGGGGGAATGGAACAGGGATGGATGCTGT
AGAGGGAGGGAAGGAGGAGGGAAGGGAGAAAGGGGCCAGTGAATTTCTGA
GCGGATGGCCTGATTTGATATGGGCGGAGGGGAAGTCCCCTAGTCCTACT
TTTACTGTTCCTGCTGCTGCTGCTACGCCACTCGACGTTTCGGATGCGGC
TGCTGCAGCATGGTCTGGTGTAGAGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGGG
GGAGGCCTATGGCGGTTCTTGCAATATAGCGGAGACATGCAGCCAGCACA
TACTTCCTCTTCCAAGTTACACCAGCAGGAGCACCAGGAGCAGCAACGGC
AACAGCAGCAGCAGGAGGTGCAGCAGGAGGCGCAGCAGGAGCAGCAGCAG
GAGGAGGGGGAGGAGGAGCAGCAGGAGGAGGACGAGGACAGACCGTCGTT
ATTCTTGGGAGGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAG
TGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAG
GGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTT
GCGACGACGGGACGCAGCGGAAAGGGAGTGA
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Coding sequence (CDS) from alignment at chr4:1302777..1304657-

>NO04G04780.1 ID=NO04G04780.1|Name=NO04G04780.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr4:1302777..1304657- (Nannochloropsis oceanica)
ATGGTTACCGTGACAACAGTCGATGAGAACGAAGACGGACTCGACTTGAT
CCTCCGCGAGCTCGCCCTCCAACCTCCATCAACAGCATCCACGACAGCAC
CACCGCGCACGACCACAACAAGCATGACGACAATAACCATAGCGACAACG
AAGGATCGCGAAAGCATACGAACCAGAGGGGACTGGAACGATCGGGAACA
AGACTCTGTAGACAGAGAGGCTTGGCCACGGGGATCCCAAATTGATGAGA
CCCGTACCCTTTATTTTCAAGGACAGCTCCGAGAATACATTCAGGACATG
GCAGATTCCTTCATTTTGCAGGAAATCGAAGCTCGTCTGGCCGATAAGCC
GTACAAGGAGCTTGCGAGCTACTATGAGGGCAAATCTGAGATGGCGAAGT
ACACCCTGGACCATGAGGTGGGGCGAATGGCGTACCGAGTCATTGACAGC
ATGGCGACGGGAAATGGGGGGGCCGTGGCTGCTGATTGTGGTTTTGGTGC
TCTCGAGAGTGACTGCTGCAGCCGCAGCTCTGTAGCCATCACTCCCAGAC
TTTCACTGTCCCCTCCTCTTCTCCTTGCCGAGAATGACCCCCCCTCCATC
CGCGCCGCCTACGCCATGCACCCGCATCTCTTTTCCTGGCGCTTAGCCAA
TCAAAGCCTTTTCGCTGAGCTCCTTCAAGAAATACAATTCAGTTTTATTA
GAGCTGATTTAGAGGTAGGCGTTGTAAGTAAAAATTCTCAATTCGTGCTC
GACGTGGGAAGGGATAGGTTGAAGGGAGTATCGATGTTTTATGTCTTGCT
AGCGGCAGCAGAAGAGGGACCTGTGGAGGTGGCGAGGATTGAAGGGGTGG
TGTCCGTTGATGTGCAAAAAGAGTGCTGGACGCACAAATTAAGGCTCGTG
AAGCTTCAGCCTGTCTTTGACGATGTCTTGAGGAAAGTGGCAGAGGCCCT
AGCAAGGCATGAGGGAGACGGGCGGGGGAGGGAGGGTGGAAGGGAGGGAG
GAAGATGGTGGGGGGGAACGCCGCGAGTGCCATTGGCATTTGACGGCTTG
AGGGAGGCAGGGCAGGGGTTGTTGCAGGCAGTGACAACAGTGGGTAGGAT
GATTGAAGACGCGGCGATAGCTGCTGATGAGGAGGAGGGAGGGAGGGAGG
AAAGGAGGGAATACGGGAAGAGAGGCAATGAGAAGCTCCTAAAAACGTCC
GGGACGCGGACCCACCCCAAGTGGGGGAATGGAACAGGGATGGATGCTGT
AGAGGGAGGGAAGGAGGAGGGAAGGGAGAAAGGGGCCAGTGAATTTCTGA
GCGGATGGCCTGATTTGATATGGGCGGAGGGGAAGTCCCCTAGTCCTACT
TTTACTGTTCCTGCTGCTGCTGCTACGCCACTCGACGTTTCGGATGCGGC
TGCTGCAGCATGGTCTGGTGTAGAGGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAGGG
GGAGGCCTATGGCGGTTCTTGCAATATAGCGGAGACATGCAGCCAGCACA
TACTTCCTCTTCCAAGTTACACCAGCAGGAGCACCAGGAGCAGCAACGGC
AACAGCAGCAGCAGGAGGTGCAGCAGGAGGCGCAGCAGGAGCAGCAGCAG
GAGGAGGGGGAGGAGGAGCAGCAGGAGGAGGACGAGGACAGACCGTCGTT
ATTCTTGGGAGGGCCGCCCTCCGGGTACTTGAAGGGGTTCATGACGGGAG
TGGGAGGCTTCATTGTGAGGGGAGTGGAGGCCGCGATGACCGAGGATGAG
GGAGGGAGGGAGGGAAGGAGGAAGAGTGAGTTGGGGCTAGGTGAGCTCTT
GCGACGACGGGACGCAGCGGAAAGGGAGTGA
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Synonyms
Publications