NO04G04700, NO04G04700 (gene) Nannochloropsis oceanica

Overview
NameNO04G04700
Unique NameNO04G04700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr4:1279784..1280977 -

Link to JBrowse

Properties
Property NameValue
DescriptionDerlin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1279784..1280977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004252serine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR022764Peptidase_S54_rhomboid_dom
IPR015940UBA/transl_elong_EF1B_N_euk
Homology
BLAST of NO04G04700 vs. NCBI_GenBank
Match: EWM28854.1 (Derlin [Nannochloropsis gaditana])

HSP 1 Score: 364.4 bits (934), Expect = 3.800e-97
Identity = 236/334 (70.66%), Postives = 256/334 (76.65%), Query Frame = 0
Query:    1 MGALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLLAG 335
            MGALAGF+NAPVTKGYCLLVVGASLLSSYT S   L LD  RILRKGE+WRL TSQ+AFQEHPQTVLG FLLYTFRHFERQMGSRKFGSFLVLSTLLATS E AIA W+G  G G+ G  GL L+ GPFG +YA+FVLFYTTVPKL+P+L+ V G D+SDKSMYYAVGAQLLLGGGW TAIPALCGL AG+LYRRNV G+Q V+LP V+CR +AS+L P+LQ  RP                      XXX           XXXXXXXXXXXXXXXXXXXXXXXXXX          AI+MLMGLGFERGAVVRALQ ADNNVEVAANRLL G
Sbjct:    1 MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLG--GKGRIG-EGLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRP----------------TMRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_024383933.1 (rhomboid-like protein 18 isoform X2 [Physcomitrella patens] >XP_024383934.1 rhomboid-like protein 18 isoform X2 [Physcomitrella patens] >XP_024383935.1 rhomboid-like protein 18 isoform X2 [Physcomitrella patens] >PNR48330.1 hypothetical protein PHYPA_012806 [Physcomitrella patens])

HSP 1 Score: 154.8 bits (390), Expect = 4.600e-34
Identity = 110/329 (33.43%), Postives = 161/329 (48.94%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEA-AIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            +GF NAPVTK   +    AS+L        AL+L   +I++K ++WRLL+S   F    + + G +L+Y FR FERQ+GS K+  F++ ST+++T+ E  A+AA   P+        G+ L  GP+G M+A+FV F+  +P ++ +   VFG   SDKS  Y  G QLLL     + IP +CGL+AG LY+ NVLGI+KV  P  +    A + +P+L +    P A                      G  G  +Q                             PP     EE I  L+ +GF+R   ++AL  A N++ VA N LL
Sbjct:    6 SGFHNAPVTKAIVMACGLASVLVGTQGGARALSLSYQKIVQKLQLWRLLSSPCVFSSTSELLFGLYLIYFFRVFERQIGSNKYLFFVLFSTIISTTLEVIALAALQDPT-----SLTGISLTPGPYGLMFALFVPFFFDIP-ISTRF-KVFGARFSDKSFVYLAGLQLLLSSWKQSLIPGVCGLVAGFLYKSNVLGIKKVKFPEGLAAAAARLFAPLLSSNSAPPTAR----------------GGRASGQNGHAFQ----------------------HRFAASAPPLTAPPEEHIATLVAMGFDRSDAMQALAVARNDITVATNLLL 289          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_024383932.1 (rhomboid-like protein 18 isoform X1 [Physcomitrella patens])

HSP 1 Score: 151.4 bits (381), Expect = 5.100e-33
Identity = 108/325 (33.23%), Postives = 158/325 (48.62%), Query Frame = 0
Query:    9 NAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEA-AIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            NAPVTK   +    AS+L        AL+L   +I++K ++WRLL+S   F    + + G +L+Y FR FERQ+GS K+  F++ ST+++T+ E  A+AA   P+        G+ L  GP+G M+A+FV F+  +P ++ +   VFG   SDKS  Y  G QLLL     + IP +CGL+AG LY+ NVLGI+KV  P  +    A + +P+L +    P A                      G  G  +Q                             PP     EE I  L+ +GF+R   ++AL  A N++ VA N LL
Sbjct:   16 NAPVTKAIVMACGLASVLVGTQGGARALSLSYQKIVQKLQLWRLLSSPCVFSSTSELLFGLYLIYFFRVFERQIGSNKYLFFVLFSTIISTTLEVIALAALQDPT-----SLTGISLTPGPYGLMFALFVPFFFDIP-ISTRF-KVFGARFSDKSFVYLAGLQLLLSSWKQSLIPGVCGLVAGFLYKSNVLGIKKVKFPEGLAAAAARLFAPLLSSNSAPPTAR----------------GGRASGQNGHAFQ----------------------HRFAASAPPLTAPPEEHIATLVAMGFDRSDAMQALAVARNDITVATNLLL 295          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_024395826.1 (rhomboid-like protein 20 [Physcomitrella patens] >PNR39424.1 hypothetical protein PHYPA_019702 [Physcomitrella patens])

HSP 1 Score: 150.2 bits (378), Expect = 1.100e-32
Identity = 107/329 (32.52%), Postives = 157/329 (47.72%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAE-AAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            +GF NAPVTKG  L    AS+L        AL+L   + ++K ++WRLLTS   F   P+ + G +L+Y FR FERQ+GS K+  ++  ST  +T  E AA+A    P+        G+ L  GP+G ++A FV F+  +P ++ +L    G   SDKS  Y  G QLLL     + +P +CGL+AG+LY+ N+LGI+KV  P  +      + +P+L +   +P                             R+ P                            PP +  SE  I  LM +GF+R   ++AL AA N+V +A N LL
Sbjct:    6 SGFHNAPVTKGIVLACGLASVLIGTQGGARALSLSYQKFVQKQQLWRLLTSPWVFSSTPEVLFGLYLVYFFRVFERQIGSNKYLFYVFFSTTTSTILEVAALAVIRDPT-----ALTGIFLTPGPYGLIFASFVPFFFDIP-ISTRL-KFLGARFSDKSFVYLAGLQLLLSSWTQSLVPGVCGLLAGLLYKSNILGIRKVKFPEGLASAATRLFTPLLSSNSTLPTTVRGAAPNGRLLEH--------------RFAPS--------------------------APPVSAQSEVHITTLMAMGFDRSDALQALAAARNDVALATNLLL 287          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: XP_024383936.1 (rhomboid-like protein 20 isoform X3 [Physcomitrella patens])

HSP 1 Score: 143.3 bits (360), Expect = 1.400e-30
Identity = 102/311 (32.80%), Postives = 151/311 (48.55%), Query Frame = 0
Query:   23 ASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEA-AIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            AS+L        AL+L   +I++K ++WRLL+S   F    + + G +L+Y FR FERQ+GS K+  F++ ST+++T+ E  A+AA   P+        G+ L  GP+G M+A+FV F+  +P ++ +   VFG   SDKS  Y  G QLLL     + IP +CGL+AG LY+ NVLGI+KV  P  +    A + +P+L +    P A                      G  G  +Q                             PP     EE I  L+ +GF+R   ++AL  A N++ VA N LL
Sbjct:    6 ASVLVGTQGGARALSLSYQKIVQKLQLWRLLSSPCVFSSTSELLFGLYLIYFFRVFERQIGSNKYLFFVLFSTIISTTLEVIALAALQDPT-----SLTGISLTPGPYGLMFALFVPFFFDIP-ISTRF-KVFGARFSDKSFVYLAGLQLLLSSWKQSLIPGVCGLVAGFLYKSNVLGIKKVKFPEGLAAAAARLFAPLLSSNSAPPTAR----------------GGRASGQNGHAFQ----------------------HRFAASAPPLTAPPEEHIATLVAMGFDRSDAMQALAVARNDITVATNLLL 271          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: ADE77792.1 (unknown [Picea sitchensis])

HSP 1 Score: 141.0 bits (354), Expect = 6.900e-30
Identity = 99/328 (30.18%), Postives = 152/328 (46.34%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            +GF NAPVTKG   +   AS++++        +L    I++K  +WRL+TS   F    + + G +LLY FR FERQ+GS K+  F++ +T+ +T  E  I      S  G        LA GP+G + ++FV F+  +P        +F V  SDKS  Y  G QLLL     + IP  CG++AG+LYR N+  IQ++ LP +V    + + +P++  G     +                         G ++Q                            + P    SEEAI  L+ +GF+R + +RAL  A N++  AA+ LL
Sbjct:    6 SGFQNAPVTKGLVFICGIASIIAATQGRASFSSLSYQAIVKKLHLWRLVTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVLFKDSISGG-------LAPGPYGIIVSLFVPFFLDIPV--STRFQIFSVRFSDKSFVYLAGLQLLLSSWKRSLIPGFCGVLAGLLYRMNIFRIQRIKLPKLVASTASWLFAPLVSGGSSTISSRRTATRETIDAPL------------GQQFQ-------------------------GNLVAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAADLLL 287          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: GAQ91389.1 (hypothetical protein KFL_007760080 [Klebsormidium nitens])

HSP 1 Score: 140.2 bits (352), Expect = 1.200e-29
Identity = 109/330 (33.03%), Postives = 152/330 (46.06%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLLAG 335
            +GF NAPVTK   L   G SLL     +   L+L    I R+ E+WRLLTS   F   P+ + G +L+Y FR FERQ+GS K+  F + ST+L+T+ +  +A+ V   G   G  + L L SGP+G ++A FV F+  +P        V  +  SDKS  Y  G QLLL  G  + IP + GL+AG+ YR NV GI+++  P  +   +    S ++    P                         P  G      G                      XXXX          A++ L+ +GF+R   VRAL  A N+V +A N LL G
Sbjct:    6 SGFYNAPVTKAIILTSAGLSLLGGLHGTARLLSLSYECIFRRHELWRLLTSATIFSSTPEILFGLYLVYFFRIFERQVGSNKYTIFALSSTILSTAFQ--LASLVALEGRFSG--DLLTLCSGPYGLIFASFVPFFFDIPV--SARFSVMSLKFSDKSFVYLAGLQLLLSSGRQSIIPGISGLLAGLTYRSNVFGIRRLKFPDFISSFVERTFSFLISRTPPTASGGRVAGPGAPGTGPTIARRLGGPSQGFSDQLIG--GNGGLPGGPFLAPQTGLGVAXXXXXXXXXXXXXXAVQTLVSMGFDRSQAVRALAQARNDVHMATNLLLEG 327          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: ADE75831.1 (unknown [Picea sitchensis])

HSP 1 Score: 139.0 bits (349), Expect = 2.600e-29
Identity = 99/328 (30.18%), Postives = 151/328 (46.04%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            +GF NAPVTKG   +   AS++++        +L    I++K  +WRL TS   F    + + G +LLY FR FERQ+GS K+  F++ +T+ +T  E  I      S  G        LA GP+G + ++FV F+  +P        +F V  SDKS  Y  G QLLL     + IP  CG++AG+LYR N+  IQ++ LP +V    + + +P++  G     +                         G ++Q                            + P    SEEAI  L+ +GF+R + +RAL  A N++  AA+ LL
Sbjct:    6 SGFQNAPVTKGLVFICGIASIIAATQGRASFSSLSYQAIVKKLHLWRLGTSVFVFSSTSELMFGLYLLYYFRVFERQIGSNKYSVFILFATIFSTLFELMILVLFKDSISGG-------LAPGPYGIIVSLFVPFFLDIPV--STRFQIFSVRFSDKSFVYLAGLQLLLSSWKRSLIPGFCGVLAGLLYRMNIFRIQRIKLPKLVASTASWLFAPLVSGGSSTISSRRTATRETIDAPL------------GQQFQ-------------------------GNLVAPTMAESEEAISALVSMGFDRSSAIRALAQARNDINAAADLLL 287          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: PTQ43799.1 (hypothetical protein MARPO_0023s0107 [Marchantia polymorpha])

HSP 1 Score: 137.9 bits (346), Expect = 5.800e-29
Identity = 81/220 (36.82%), Postives = 124/220 (56.36%), Query Frame = 0
Query:    5 AGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEA-AIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQT 224
            +GF NA VTKG  ++    SLL        A +L    I RK ++WRL+TS       P+ + G +L+Y FR FERQ+GS K+  F++ ST+L T  E  A+AA   P+       +G+ L+ GP+G ++A F+ F+  +P ++ +   VFG   SDKS  Y  G QLLL     + IP +CG++AG  YR NVL ++++  P  +    A++  P+L +
Sbjct:    6 SGFQNAAVTKGVVIICGVVSLLVGTQGGARACSLSYQAIFRKLQLWRLITSNFVVSTSPELIFGLYLIYFFRVFERQLGSNKYMVFVLFSTILTTLLEVIALAAIRDPTS------SGIALSPGPYGLIFASFIPFFFDIP-ISTRF-RVFGATFSDKSFIYLAGLQLLLSSWKRSLIPGICGILAGFTYRSNVLRLRRMKFPDSLASATATLFRPLLSS 217          
BLAST of NO04G04700 vs. NCBI_GenBank
Match: BAJ94565.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 136.0 bits (341), Expect = 2.200e-28
Identity = 103/331 (31.12%), Postives = 147/331 (44.41%), Query Frame = 0
Query:    2 GALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIPGAEXXXXXXXXXXXXXXXXXXXXPGAGGPRYQPGXXXXXXXXXXXXXXXXXXXXXXXXXXIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLL 333
            G ++GF NAPVT+   L     S++ S  +   AL L    I++   +WR+  S  AFQ  P+ + G +LLY FR FERQMGS K+  F + +  ++   E      +      K       LASGP+G ++A F+ F+  +P  +     +FGV+ SDKS  Y  G QLL+     + IP +CGL+AG LYR NVLGI++  LP +V    A   +P                                P A   R  P                           + PP    E +I ML+ +GF+  A  +AL  A N++ VA N LL
Sbjct:    4 GGVSGFHNAPVTRAIVLASGLLSVVFSVNRRARALGLSYQDIIKNFRVWRIFGSVFAFQSTPELMFGLYLLYYFRVFERQMGSNKYSVFSLFAIAVSLPLEILSLVLL------KDTNYITALASGPYGLIFASFIPFFLDIPITS--RFRIFGVNFSDKSFIYLAGLQLLVSSWKRSLIPGICGLIAGSLYRLNVLGIRRRKLPQIVASFFARFFAP--------------------------------PSASSSR--PSRSLVGNVPSHTGRAVQNQPSTGFAPVVEPP----ESSIAMLVSMGFDSNAARQALMRARNDINVATNILL 288          
The following BLAST results are available for this feature:
BLAST of NO04G04700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28854.13.800e-9770.66Derlin [Nannochloropsis gaditana][more]
XP_024383933.14.600e-3433.43rhomboid-like protein 18 isoform X2 [Physcomitrell... [more]
XP_024383932.15.100e-3333.23rhomboid-like protein 18 isoform X1 [Physcomitrell... [more]
XP_024395826.11.100e-3232.52rhomboid-like protein 20 [Physcomitrella patens] >... [more]
XP_024383936.11.400e-3032.80rhomboid-like protein 20 isoform X3 [Physcomitrell... [more]
ADE77792.16.900e-3030.18unknown [Picea sitchensis][more]
GAQ91389.11.200e-2933.03hypothetical protein KFL_007760080 [Klebsormidium ... [more]
ADE75831.12.600e-2930.18unknown [Picea sitchensis][more]
PTQ43799.15.800e-2936.82hypothetical protein MARPO_0023s0107 [Marchantia p... [more]
BAJ94565.12.200e-2831.12predicted protein [Hordeum vulgare subsp. vulgare][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009310NSK009310Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04700.1NO04G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298230gene_2258Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100133g6gene1744Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04700.1NO04G04700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04700 ID=NO04G04700|Name=NO04G04700|organism=Nannochloropsis oceanica|type=gene|length=1194bp
ACAGGGACTTTCACCTTGCGACACTTCGGATCGTCTCCCTCCCTCCTTCT
GTCCTTATCCTCCCTCTCCTTGACCAGCAAGCAGCATTAGCAGCATCACC
ATTCCGCCCCGCAGCACACCTAAGCCGCACCTACAGAGCTACACACCCAA
GAGCAAAGCATAAAGCATGGGTGCCCTCGCCGGATTCATCAACGCCCCCG
TCACCAAAGGCTACTGCCTCTTGGTGGTGGGCGCCTCCCTCCTTTCCTCC
TACACCCAATCCGGCCCAGCTCTCACTCTAGACCTCGCCCGCATTCTCCG
CAAGGGGGAAATCTGGCGTCTGCTCACCAGTCAACTAGCCTTCCAAGAAC
ATCCACAAACCGTGCTCGGAACATTTTTACTATACACCTTTCGGCATTTT
GAACGGCAGATGGGCTCGAGGAAATTTGGGTCTTTTTTAGTCCTTTCCAC
CTTGCTAGCTACCTCGGCCGAAGCTGCCATCGCTGCCTGGGTGGGTCCAA
GTGGAGGCGGTAAAGGAGGCAGGAATGGATTGGTGCTGGCATCAGGGCCG
TTCGGGGCGATGTACGCGATGTTTGTCCTGTTCTATACGACTGTGCCGAA
GCTGAATCCAAAGTTGGTAGGGGTTTTCGGGGTGGACATAAGTGACAAAA
GCATGTACTACGCGGTGGGGGCGCAGCTGCTGCTGGGGGGTGGGTGGGCG
ACAGCAATCCCGGCTTTGTGTGGTTTAATGGCGGGGATGTTGTACAGAAG
AAATGTGCTGGGGATTCAGAAGGTGATGCTTCCGGGGGTTGTGTGTAGGT
GTCTTGCATCCATGCTTAGCCCGGTACTGCAGACGGGGCGGCCGATCCCG
GGGGCGGAGAGGCGAAGGCGGGGAGGAGGGGGAGGAGGAGGAGGGCCAGG
TGGGAGGGAGCAGCTGTTGCCGGGTGCGGGGGGCCCGAGGTATCAGCCAG
GACAACCAAGAAGGGGGGGAGGGAGACACCAACCAGTAGGAGGAGCTGCA
GGAGCAGGAGTAGCGGTCCCGCTTGCTGGCATTCCACCGCCGGCGCCGGC
ATCGGAGGAGGCGATTGAGATGTTGATGGGTTTGGGATTCGAGAGAGGGG
CGGTGGTGAGGGCATTGCAGGCTGCGGACAACAATGTAGAGGTGGCGGCC
AATCGGTTGCTGGCGGGGGGATGAAGGAAGGAGGGTGGGAGGGA
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protein sequence of NO04G04700.1

>NO04G04700.1-protein ID=NO04G04700.1-protein|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MGALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIW
RLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATS
AEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKL
VGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGI
QKVMLPGVVCRCLASMLSPVLQTGRPIPGAERRRRGGGGGGGGPGGREQL
LPGAGGPRYQPGQPRRGGGRHQPVGGAAGAGVAVPLAGIPPPAPASEEAI
EMLMGLGFERGAVVRALQAADNNVEVAANRLLAGG*
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