NO04G04700.1, NO04G04700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04700.1
Unique NameNO04G04700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr4:1279784..1280977 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1279784..1280977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G04700.1 vs.
Match: EWM28854.1 (Derlin [Nannochloropsis gaditana])

HSP 1 Score: 416.4 bits (1069), Expect = 8.500e-113
Identity = 241/338 (71.30%), Postives = 263/338 (77.81%), Query Frame = 0
Query:    1 MGALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIWRLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATSAEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKLVGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGIQKVMLPGVVCRCLASMLSPVLQTGRPIP----GAERRRRGGGGGGGGPGGREQLLPGAGGPRYQPGQPRRGGGRHQPVGGAAGAGVAVPLAGIPPPAPASEEAIEMLMGLGFERGAVVRALQAADNNVEVAANRLLAG 335
            MGALAGF+NAPVTKGYCLLVVGASLLSSYT S   L LD  RILRKGE+WRL TSQ+AFQEHPQTVLG FLLYTFRHFERQMGSRKFGSFLVLSTLLATS E AIA W+G  G G+ G  GL L+ GPFG +YA+FVLFYTTVPKL+P+L+ V G D+SDKSMYYAVGAQLLLGGGW TAIPALCGL AG+LYRRNV G+Q V+LP V+CR +AS+L P+LQ  RP      GAERRRR  G       GREQLLPG  G R       RGGG     GG  G  +A P    PPP PASE+AI+MLMGLGFERGAVVRALQ ADNNVEVAANRLL G
Sbjct:    1 MGALAGFVNAPVTKGYCLLVVGASLLSSYTHSSHTLRLDTTRILRKGELWRLFTSQIAFQEHPQTVLGVFLLYTFRHFERQMGSRKFGSFLVLSTLLATSTEMAIAGWLG--GKGRIGE-GLALSPGPFGVVYALFVLFYTTVPKLHPRLLRVCGADLSDKSMYYAVGAQLLLGGGWKTAIPALCGLFAGILYRRNVFGMQSVLLPQVLCRGVASVLEPLLQARRPTMRGRGGAERRRRRAG-----MAGREQLLPG--GDRALG----RGGG-----GGREGGQLAPP----PPPPPASEDAIQMLMGLGFERGAVVRALQGADNNVEVAANRLLQG 315          
The following BLAST results are available for this feature:
BLAST of NO04G04700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28854.18.500e-11371.30Derlin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04700NO04G04700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04700.1NO04G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04700.1.cds1NO04G04700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04700.1 ID=NO04G04700.1|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ACAGGGACTTTCACCTTGCGACACTTCGGATCGTCTCCCTCCCTCCTTCT
GTCCTTATCCTCCCTCTCCTTGACCAGCAAGCAGCATTAGCAGCATCACC
ATTCCGCCCCGCAGCACACCTAAGCCGCACCTACAGAGCTACACACCCAA
GAGCAAAGCATAAAGCATGGGTGCCCTCGCCGGATTCATCAACGCCCCCG
TCACCAAAGGCTACTGCCTCTTGGTGGTGGGCGCCTCCCTCCTTTCCTCC
TACACCCAATCCGGCCCAGCTCTCACTCTAGACCTCGCCCGCATTCTCCG
CAAGGGGGAAATCTGGCGTCTGCTCACCAGTCAACTAGCCTTCCAAGAAC
ATCCACAAACCGTGCTCGGAACATTTTTACTATACACCTTTCGGCATTTT
GAACGGCAGATGGGCTCGAGGAAATTTGGGTCTTTTTTAGTCCTTTCCAC
CTTGCTAGCTACCTCGGCCGAAGCTGCCATCGCTGCCTGGGTGGGTCCAA
GTGGAGGCGGTAAAGGAGGCAGGAATGGATTGGTGCTGGCATCAGGGCCG
TTCGGGGCGATGTACGCGATGTTTGTCCTGTTCTATACGACTGTGCCGAA
GCTGAATCCAAAGTTGGTAGGGGTTTTCGGGGTGGACATAAGTGACAAAA
GCATGTACTACGCGGTGGGGGCGCAGCTGCTGCTGGGGGGTGGGTGGGCG
ACAGCAATCCCGGCTTTGTGTGGTTTAATGGCGGGGATGTTGTACAGAAG
AAATGTGCTGGGGATTCAGAAGGTGATGCTTCCGGGGGTTGTGTGTAGGT
GTCTTGCATCCATGCTTAGCCCGGTACTGCAGACGGGGCGGCCGATCCCG
GGGGCGGAGAGGCGAAGGCGGGGAGGAGGGGGAGGAGGAGGAGGGCCAGG
TGGGAGGGAGCAGCTGTTGCCGGGTGCGGGGGGCCCGAGGTATCAGCCAG
GACAACCAAGAAGGGGGGGAGGGAGACACCAACCAGTAGGAGGAGCTGCA
GGAGCAGGAGTAGCGGTCCCGCTTGCTGGCATTCCACCGCCGGCGCCGGC
ATCGGAGGAGGCGATTGAGATGTTGATGGGTTTGGGATTCGAGAGAGGGG
CGGTGGTGAGGGCATTGCAGGCTGCGGACAACAATGTAGAGGTGGCGGCC
AATCGGTTGCTGGCGGGGGGATGAAGGAAGGAGGGTGGGAGGGA
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protein sequence of NO04G04700.1

>NO04G04700.1-protein ID=NO04G04700.1-protein|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MGALAGFINAPVTKGYCLLVVGASLLSSYTQSGPALTLDLARILRKGEIW
RLLTSQLAFQEHPQTVLGTFLLYTFRHFERQMGSRKFGSFLVLSTLLATS
AEAAIAAWVGPSGGGKGGRNGLVLASGPFGAMYAMFVLFYTTVPKLNPKL
VGVFGVDISDKSMYYAVGAQLLLGGGWATAIPALCGLMAGMLYRRNVLGI
QKVMLPGVVCRCLASMLSPVLQTGRPIPGAERRRRGGGGGGGGPGGREQL
LPGAGGPRYQPGQPRRGGGRHQPVGGAAGAGVAVPLAGIPPPAPASEEAI
EMLMGLGFERGAVVRALQAADNNVEVAANRLLAGG*
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mRNA from alignment at chr4:1279784..1280977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04700.1 ID=NO04G04700.1|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp|location=Sequence derived from alignment at chr4:1279784..1280977- (Nannochloropsis oceanica)
ACAGGGACTTTCACCTTGCGACACTTCGGATCGTCTCCCTCCCTCCTTCT GTCCTTATCCTCCCTCTCCTTGACCAGCAAGCAGCATTAGCAGCATCACC ATTCCGCCCCGCAGCACACCTAAGCCGCACCTACAGAGCTACACACCCAA GAGCAAAGCATAAAGCATGGGTGCCCTCGCCGGATTCATCAACGCCCCCG TCACCAAAGGCTACTGCCTCTTGGTGGTGGGCGCCTCCCTCCTTTCCTCC TACACCCAATCCGGCCCAGCTCTCACTCTAGACCTCGCCCGCATTCTCCG CAAGGGGGAAATCTGGCGTCTGCTCACCAGTCAACTAGCCTTCCAAGAAC ATCCACAAACCGTGCTCGGAACATTTTTACTATACACCTTTCGGCATTTT GAACGGCAGATGGGCTCGAGGAAATTTGGGTCTTTTTTAGTCCTTTCCAC CTTGCTAGCTACCTCGGCCGAAGCTGCCATCGCTGCCTGGGTGGGTCCAA GTGGAGGCGGTAAAGGAGGCAGGAATGGATTGGTGCTGGCATCAGGGCCG TTCGGGGCGATGTACGCGATGTTTGTCCTGTTCTATACGACTGTGCCGAA GCTGAATCCAAAGTTGGTAGGGGTTTTCGGGGTGGACATAAGTGACAAAA GCATGTACTACGCGGTGGGGGCGCAGCTGCTGCTGGGGGGTGGGTGGGCG ACAGCAATCCCGGCTTTGTGTGGTTTAATGGCGGGGATGTTGTACAGAAG AAATGTGCTGGGGATTCAGAAGGTGATGCTTCCGGGGGTTGTGTGTAGGT GTCTTGCATCCATGCTTAGCCCGGTACTGCAGACGGGGCGGCCGATCCCG GGGGCGGAGAGGCGAAGGCGGGGAGGAGGGGGAGGAGGAGGAGGGCCAGG TGGGAGGGAGCAGCTGTTGCCGGGTGCGGGGGGCCCGAGGTATCAGCCAG GACAACCAAGAAGGGGGGGAGGGAGACACCAACCAGTAGGAGGAGCTGCA GGAGCAGGAGTAGCGGTCCCGCTTGCTGGCATTCCACCGCCGGCGCCGGC ATCGGAGGAGGCGATTGAGATGTTGATGGGTTTGGGATTCGAGAGAGGGG CGGTGGTGAGGGCATTGCAGGCTGCGGACAACAATGTAGAGGTGGCGGCC AATCGGTTGCTGGCGGGGGGATGAAGGAAGGAGGGTGGGAGGGA
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Coding sequence (CDS) from alignment at chr4:1279784..1280977-

>NO04G04700.1 ID=NO04G04700.1|Name=NO04G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr4:1279784..1280977- (Nannochloropsis oceanica)
ATGGGTGCCCTCGCCGGATTCATCAACGCCCCCGTCACCAAAGGCTACTG
CCTCTTGGTGGTGGGCGCCTCCCTCCTTTCCTCCTACACCCAATCCGGCC
CAGCTCTCACTCTAGACCTCGCCCGCATTCTCCGCAAGGGGGAAATCTGG
CGTCTGCTCACCAGTCAACTAGCCTTCCAAGAACATCCACAAACCGTGCT
CGGAACATTTTTACTATACACCTTTCGGCATTTTGAACGGCAGATGGGCT
CGAGGAAATTTGGGTCTTTTTTAGTCCTTTCCACCTTGCTAGCTACCTCG
GCCGAAGCTGCCATCGCTGCCTGGGTGGGTCCAAGTGGAGGCGGTAAAGG
AGGCAGGAATGGATTGGTGCTGGCATCAGGGCCGTTCGGGGCGATGTACG
CGATGTTTGTCCTGTTCTATACGACTGTGCCGAAGCTGAATCCAAAGTTG
GTAGGGGTTTTCGGGGTGGACATAAGTGACAAAAGCATGTACTACGCGGT
GGGGGCGCAGCTGCTGCTGGGGGGTGGGTGGGCGACAGCAATCCCGGCTT
TGTGTGGTTTAATGGCGGGGATGTTGTACAGAAGAAATGTGCTGGGGATT
CAGAAGGTGATGCTTCCGGGGGTTGTGTGTAGGTGTCTTGCATCCATGCT
TAGCCCGGTACTGCAGACGGGGCGGCCGATCCCGGGGGCGGAGAGGCGAA
GGCGGGGAGGAGGGGGAGGAGGAGGAGGGCCAGGTGGGAGGGAGCAGCTG
TTGCCGGGTGCGGGGGGCCCGAGGTATCAGCCAGGACAACCAAGAAGGGG
GGGAGGGAGACACCAACCAGTAGGAGGAGCTGCAGGAGCAGGAGTAGCGG
TCCCGCTTGCTGGCATTCCACCGCCGGCGCCGGCATCGGAGGAGGCGATT
GAGATGTTGATGGGTTTGGGATTCGAGAGAGGGGCGGTGGTGAGGGCATT
GCAGGCTGCGGACAACAATGTAGAGGTGGCGGCCAATCGGTTGCTGGCGG
GGGGATGA
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Synonyms
Publications