NO04G04660, NO04G04660 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04660
Unique Name	NO04G04660
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2727
Alignment location	chr4:1267552..1270278 -

Link to JBrowse

Properties


Property Name	Value
Description	Ribonucleoside-diphosphate reductase small chain

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1267552..1270278 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0009058	biosynthetic process
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR009078	Ferritin-like_SF
IPR000358	RNR_small

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: EWM28865.1 (ribonucleoside-diphosphate reductase small chain [Nannochloropsis gaditana])

HSP 1 Score: 697.2 bits (1798), Expect = 2.800e-197
Identity = 337/378 (89.15%), Postives = 361/378 (95.50%), Query Frame = 0

Query:    1 MPLTEHTNVAPVPEDLAATMEQKLSLASKSAAAALPDEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            MPLTEH+N+A  PEDLAA++E+KLSL S    AA P+E++ L+PS+MKLRELAG+MD+ELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKL+D ERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKN  EKHKLLNAI+TVPCVRRKA+WALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACLLY+KC IKCPEERV  II+DAVAIEK+FITDALPVELIGMNSRLMC+YIEFCADRLLL+LGC KAYH+RNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGN+EDQVFSLE +F
Sbjct:   17 MPLTEHSNIANSPEDLAASVEKKLSLGS---TAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_005854141.1 (ribonucleoside-diphosphate reductase subunit M2 [Nannochloropsis gaditana CCMP526] >EKU22218.1 ribonucleoside-diphosphate reductase subunit M2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 581.6 bits (1498), Expect = 1.700e-162
Identity = 277/297 (93.27%), Postives = 289/297 (97.31%), Query Frame = 0

Query:   82 MYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            MYKQAEASFWTAEELDLAHDKTDWEKL+D ERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKN  EKHKLLNAI+TVPCVRRKA+WALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACLLY+KC IKCPEERV  II+DAVAIEK+FITDALPVELIGMNSRLMC+YIEFCADRLLL+LGC KAYH+RNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGN+EDQVFSLE +F
Sbjct:    1 MYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 297

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BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_008606452.1 (ribonucleoside-diphosphate reductase subunit M2 [Saprolegnia diclina VS20] >EQC39978.1 ribonucleoside-diphosphate reductase subunit M2 [Saprolegnia diclina VS20])

HSP 1 Score: 548.1 bits (1411), Expect = 2.100e-152
Identity = 256/345 (74.20%), Postives = 303/345 (87.83%), Query Frame = 0

Query:   34 ALPDEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            ALP  E++   +E K REL GE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DWEKLSD ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AIDT+PCV+RKAQWAL+WC+ + A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K   ERV +I+ DAV IEK+F++++LPVELIGMNS LMC+YIEFCADRLL +LG +K Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + EDQ F+L+A+F
Sbjct:    3 ALPQPEIIGDITEYKRRELNGELAPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQKDWEKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTVEKDRVLRAIDTIPCVQRKAQWALKWCNNQIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERVHEIVGDAVTIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLHALGATKLYNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 347

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_012208970.1 (ribonucleoside-diphosphate reductase small subunit [Saprolegnia parasitica CBS 223.65] >KDO20300.1 ribonucleoside-diphosphate reductase small subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 545.0 bits (1403), Expect = 1.800e-151
Identity = 252/345 (73.04%), Postives = 303/345 (87.83%), Query Frame = 0

Query:   34 ALPDEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            A+P  E++   +E K REL GE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DWEKLSD ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AIDT+PCV+RKAQWAL+WC+ + A++AER++AFAA+EGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K   ER+ +I+ DAV IEK+F++++LPVELIGMNS LMC+YIEFCADRLL +LG +K ++ +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + EDQ F+L+A+F
Sbjct:    3 AIPQPEIIGDITEYKRRELNGELTPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQKDWEKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTTEKDRVLRAIDTIPCVQRKAQWALKWCNSQIAAYAERIVAFAAIEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIVGDAVKIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLHALGATKLFNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSAEDQSFTLDADF 347

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: OQR90437.1 (ribonucleoside-diphosphate reductase small chain [Achlya hypogyna])

HSP 1 Score: 543.1 bits (1398), Expect = 6.800e-151
Identity = 253/343 (73.76%), Postives = 299/343 (87.17%), Query Frame = 0

Query:   36 PDEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            P  E + + +E K RELAGE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD  DWEKL+D ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AIDT+PCV+RKAQWAL+WC+ + A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K   ER+ +II DAV IEK+F++++LPVELIGMNS LMC YIEFCADRLL +LG +K +H +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG +  DQ F+L+A+F
Sbjct:    5 PTPEPITEITEYKARELAGELAPEPFLSENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDLKDWEKLTDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDTVEKDRVLRAIDTIPCVQRKAQWALKWCNNQIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIIGDAVEIEKQFVSESLPVELIGMNSTLMCQYIEFCADRLLNALGATKLFHAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSEADQTFTLDADF 347

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_008872755.1 (hypothetical protein H310_08682 [Aphanomyces invadans] >ETV98558.1 hypothetical protein H310_08682 [Aphanomyces invadans])

HSP 1 Score: 542.7 bits (1397), Expect = 8.900e-151
Identity = 253/338 (74.85%), Postives = 297/338 (87.87%), Query Frame = 0

Query:   41 VLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            V+  SE KLREL GE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DW KL+D ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AIDT+PCVRRKA WAL+WCD K A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K  ++R+ +I+ DAVAIEK+F++++LPVELIGMNS LMC+YIEFCADRLL +LG  K Y  +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG +  DQ F+L+A+F
Sbjct:   11 VVGMSEYKLRELNGELAPEPFLAENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQRDWVKLTDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDATEKDRVLRAIDTIPCVRRKATWALKWCDNKRAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLVNKLSDQRIHEIVGDAVAIEKQFVSESLPVELIGMNSSLMCEYIEFCADRLLEALGAPKLYAAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSSSDQTFTLDADF 348

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: OQR90167.1 (ribonucleoside-diphosphate reductase small chain [Thraustotheca clavata])

HSP 1 Score: 538.9 bits (1387), Expect = 1.300e-149
Identity = 250/334 (74.85%), Postives = 296/334 (88.62%), Query Frame = 0

Query:   45 SEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E K REL GE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD  DW KL+D ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AIDT+PCV+RKA+WAL+WC+ K A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K   ER+ +II DAVAIEK+F++++LPVELIGMNS LMC+YIEFCADRLL +LG +K Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG + +DQ F+L+A+F
Sbjct:   12 TEYKRRELNGELAPEPFLSENPNRFVLFPIQHTDVWEMYKKAEASFWTAEELDLVHDMKDWTKLTDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDIVEKDRVLRAIDTIPCVQRKAKWALKWCNGKIAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLINKLSNERIHEIIGDAVAIEKQFVSESLPVELIGMNSSLMCEYIEFCADRLLQALGATKLYNAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVSADDQAFTLDADF 345

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: XP_009832462.1 (hypothetical protein H257_08329 [Aphanomyces astaci] >ETV78125.1 hypothetical protein H257_08329 [Aphanomyces astaci])

HSP 1 Score: 535.8 bits (1379), Expect = 1.100e-148
Identity = 250/338 (73.96%), Postives = 295/338 (87.28%), Query Frame = 0

Query:   41 VLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            V+  +E K+REL GE+  E  L +NP R+V+FPIQH D+W+MYK+AEASFWTAEELDL HD+ DW KLSD ER F++HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK ++L AI+T+PCV RKA WAL+WCD K A++AER++AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACL+YSK   K  + R+ +I+ DAV IEK+F++++LPVELIGMNS LMC+YIEFCADRLL SLG  K +  +NPFDWMD+ISLQGKTNFFEKRVGEY+KSGVG NV +Q F+L+A+F
Sbjct:   12 VVDLTEHKIRELNGELAPEPFLVENPNRFVLFPIQHADVWEMYKKAEASFWTAEELDLVHDQRDWIKLSDNERFFITHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDPTEKDRVLRAIETIPCVMRKANWALKWCDNKRAAYAERIVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLMYSKLVNKLSDTRIHEIVGDAVEIEKQFVSESLPVELIGMNSALMCEYIEFCADRLLESLGAPKLFAAKNPFDWMDMISLQGKTNFFEKRVGEYSKSGVGVNVSEQTFTLDADF 349

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: ETP35599.1 (ribonucleoside-diphosphate reductase small chain [Phytophthora parasitica P10297])

HSP 1 Score: 535.4 bits (1378), Expect = 1.400e-148
Identity = 254/342 (74.27%), Postives = 291/342 (85.09%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            +E+  L+ SE K +EL GE+  E  L DNP R+V+FPIQ  ++W MYK+AEASFWTAEELDL HD  DW KL+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AI+T+PCV +KA WAL+WCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACLLYSK   K PE RV +II+DAV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG SK YH +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:  105 EEQPELEMSEFKRKELNGEIPVEPFLVDNPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDWSKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWALKWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIIRDAVVIEHEFVRDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYHAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 446

[Close]

BLAST of NO04G04660 vs. NCBI_GenBank
Match: OWZ24863.1 (Ribonucleoside-diphosphate reductase small chain [Phytophthora megakarya])

HSP 1 Score: 534.3 bits (1375), Expect = 3.100e-148
Identity = 252/342 (73.68%), Postives = 292/342 (85.38%), Query Frame = 0

Query:   37 DEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            DE+  ++ SE K +EL+GE+  E  L +NP R+V+FPIQ  D+W MYK+AEASFWTAEELDL HD  DW  L+D ERHF+ HVLAFFAASDGIVNENLA+NFSNE+Q+PEARCFYGFQIAIENIHSEVYSLLIDTYIK+  EK  LL AIDT+PCV++KA WALRWCD + +S+ ERL+AFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEG+H DFACL+YSK   K PE RV +I++DAV IE EF+ D+LPVELIGMNS LMC YIEF ADRLL SLG SK Y+ +NPFDWMD+ISLQGKTNFFEKRVGEY+K+GVG   E+QVF+L+A+F
Sbjct:   34 DEQSKVEMSEFKRKELSGELPLEPFLVENPNRFVLFPIQEHDVWQMYKKAEASFWTAEELDLVHDLKDWGNLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIDTIPCVKKKAHWALRWCDPRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLMYSKLVNKLPESRVHEIVRDAVVIEHEFVRDSLPVELIGMNSGLMCQYIEFVADRLLYSLGVSKIYNAKNPFDWMDMISLQGKTNFFEKRVGEYSKAGVGVAAEEQVFTLDADF 375

The following BLAST results are available for this feature:

BLAST of NO04G04660 vs. NCBI_GenBank

BLAST of NO04G04660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28865.1	2.800e-197	89.15	ribonucleoside-diphosphate reductase small chain [...	[more]
XP_005854141.1	1.700e-162	93.27	ribonucleoside-diphosphate reductase subunit M2 [N...	[more]
XP_008606452.1	2.100e-152	74.20	ribonucleoside-diphosphate reductase subunit M2 [S...	[more]
XP_012208970.1	1.800e-151	73.04	ribonucleoside-diphosphate reductase small subunit...	[more]
OQR90437.1	6.800e-151	73.76	ribonucleoside-diphosphate reductase small chain [...	[more]
XP_008872755.1	8.900e-151	74.85	hypothetical protein H310_08682 [Aphanomyces invad...	[more]
OQR90167.1	1.300e-149	74.85	ribonucleoside-diphosphate reductase small chain [...	[more]
XP_009832462.1	1.100e-148	73.96	hypothetical protein H257_08329 [Aphanomyces astac...	[more]
ETP35599.1	1.400e-148	74.27	ribonucleoside-diphosphate reductase small chain [...	[more]
OWZ24863.1	3.100e-148	73.68	Ribonucleoside-diphosphate reductase small chain [...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL082	nonsL082	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL080	nonsL080	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR110	ngnoR110	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009320	NSK009320	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G04660.1	NO04G04660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524768	gene_2254	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100133g14	gene1751	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G04660.1	NO04G04660.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G04660 ID=NO04G04660|Name=NO04G04660|organism=Nannochloropsis oceanica|type=gene|length=2727bp
CGGGAAGTGGAAGTGTGTTGCAGAAGCCTTAGCACAAAGCTGGTCGACAA
GTCCTTATTCTTTCTTTTCTGCATTGCTGGCGTGGTTTAGGGGTCCACCG
TGTACAAAGAATACTCGCAGTGCGCTTGTACTGGGCCTGGTATTCATCTT
TTGTGTCAATTGGCAGCAAATAAGTGGTCGTTCGTAACCTTCTCGCTTCC
TCTGGCAGCAGGCACCAAGGCACACCCCGCGCTCTCCACTACACCACGCA
TGCACACACAACCACCTTCACCTCACGCACATCAGCACACGCCAATGTGC
GCAGTGCCCACGTCCGTTTCCTTGCATTTACTGACTCAGTGCCTTGGGGT
CTGAAGCGTTCCGGCCGCCCCTCATTTCATGCCTCCCGTCCCGCCTTCGC
ACGTCTGACTAAGTCCCCTGCACACACAACATACAGAACTCCCACTACCA
GTACCACCGGCTACCATGCCCCTCACCGAGCACACCAACGTGGCCCCAGT
GCCCGAGGACCTGGCTGCGACCATGGAGCAGAAATTGTCCCTGGCCAGCA
AGAGCGCCGCCGCCGCCCTGCCGGACGAAGAGCTCGTGCTTAAGCCTTCT
GAGATGAAGCTGCGTGAGCTAGCAGGCGAGATGGACAACGAGCTCCTCCT
AAAGGATAATCCGGGCCGCTATGTCATCTTCCCCATTCAGCACCAGGATg
tacgtattgacagacggaggtggtagtgggggggggggctaattgccgtg
tgccttgttttcccgccctcttctgcgggtgtgtgtgtctgccttaggtc
catcttgcccagtattggcattggcagcacagcaacaacctggcagggca
agcttcctgctgtgtttaccgctgtatctgcagtgtctattgctcaagtt
gtttcccgccttctgtggtctgtggagggaggctcgtgcctcggcatgcg
cagcctccctccctcctctccatgcctgccgcgccagcaccatcatttat
gcgtaccttctcgacaggaggcaggcagcaagtgtgtgatgaaatggaga
tgtataggttctgctgctcgctttctgctgctttcctgcccaatactctc
ggtccccacttaccatcacttccctccttccctccctcccctcctcccac
ctttcccccggcaccaccacagATCTGGGACATGTACAAGCAAGCTGAGG
CCTCTTTCTGGACGGCGGAGGAGCTGGACCTGGCCCACGACAAGACTGAC
TGGGAGAAGCTTTCCGACAAGGAGCGTCATTTCGTCTCGCACGTCCTCGC
CTTCTTCGCCGCGTCCGATGGGATCGTTAACGAAAACCTGGCCTTGAACT
TCTCCAACGAGATTCAGCTGCCGgtgcgtgctacggatctatcgtttgat
tgagtcatgaccccacccccctccctctttctgtgttggcgtcttcgtcg
ttgtctcactcccacctccccctccttccctccttcccgcgctccccccc
cacctcgactgcacagGAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCA
TCGAGAACATCCACAGCGAGGTATACTCCCTCCTCATCGACACGTACATC
AAGAACGGTCAAGAGAAGCACAAGCTCCTCAATGCCATTGATACTGTGCC
TTGTGTCCGTCGGAAGGCGCAGTGGGCCCTCAGGTGGTGCGACCGGAAGT
ACGCCTCTTTCGCCGAGCGCCTGATTGCGTTTGCGGCCGTGGAAGGTATA
TTTTTCAGTGGGTCGTTCTGCTCGATATTCTGGCTGAAGAAGAGGGGTTT
GATGCCGgtaggtggggagtggggaggggagggggaagggagggagaaca
gtaaggaaggagggaaggcgggaaggagggagggctgaattgacgacctt
ttttaccgagctgtcttgttttcaatgtatgtatgaatctaaacctttcc
tttctcccctcccccctcccttcctacctcagGGGCTCTCCTTCTCGAAC
GAGCTCATCTCCCGCGACGAGGGTTTGCACTGTGACTTCGCCTGCCTCCT
ATACAGCAAGTGCAGCATCAAGTGCCCGGAGGAGCGTGTGGTGGACATCA
TCAAGGACGCGGTGGCCATCGAGAAGGAATTCATCACCGATGCCCTGCCC
GTGGAGCTGATTGGGATGAATAGgtgagtcctgtctccctccctccctcc
ctttctctttcccgccctccctcccaccctaagggtttaccgaggaggct
gcccctgccgtatagatcacttttcctcctcaccctccctctctccctcc
ctccctcctttatagCCGCCTCATGTGCGACTACATCGAGTTCTGCGCCG
ACCGGCTCCTTTTGTCGTTGGGCTGCTCCAAGGCGTACCATACCCGGAAC
CCGTTTGACTGGATGGACCTCATCTCCTTGCAGgtaggaagggagggagg
gaggaatggaaagaagggagggcgtgaaggagtgcctgtttcgtattcca
tactgccgaactccgaggcaacttacccaccaccccgtttctctttccct
ccctccctccctccctccctccccccacagGGCAAGACCAACTTTTTCGA
GAAGCGCGTGGGGGAGTACGCGAAAAGCGGCGTCGGTGGAAATGTTGAGG
ACCAGGTTTTCTCTCTGGAGGCCGAGTTCTAAACCTCCTTTCTTTCCTTG
CTCCCCTCCCTCCCTCCCTCCCTCCCT

protein sequence of NO04G04660.1

>NO04G04660.1-protein ID=NO04G04660.1-protein|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPLTEHTNVAPVPEDLAATMEQKLSLASKSAAAALPDEELVLKPSEMKLR
ELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAH
DKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCF
YGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWAL
RWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNEL
ISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVE
LIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNF
FEKRVGEYAKSGVGGNVEDQVFSLEAEF*

Synonyms

Publications