NO04G04660.1, NO04G04660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04660.1
Unique NameNO04G04660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1647
Alignment locationchr4:1267552..1270278 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1267552..1270278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04660.1 vs.
Match: EWM28865.1 (ribonucleoside-diphosphate reductase small chain [Nannochloropsis gaditana])

HSP 1 Score: 697.2 bits (1798), Expect = 2.800e-197
Identity = 337/378 (89.15%), Postives = 361/378 (95.50%), Query Frame = 0 
Query:    1 MPLTEHTNVAPVPEDLAATMEQKLSLASKSAAAALPDEELVLKPSEMKLRELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVELIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNVEDQVFSLEAEF 379
            MPLTEH+N+A  PEDLAA++E+KLSL S    AA P+E++ L+PS+MKLRELAG+MD+ELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKL+D ERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKN  EKHKLLNAI+TVPCVRRKA+WALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGL+FSNELISRDEGLHCDFACLLY+KC IKCPEERV  II+DAVAIEK+FITDALPVELIGMNSRLMC+YIEFCADRLLL+LGC KAYH+RNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGN+EDQVFSLE +F
Sbjct:   17 MPLTEHSNIANSPEDLAASVEKKLSLGS---TAAQPEEDVELQPSDMKLRELAGDMDDELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAHDKTDWEKLTDNERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCFYGFQIAIENIHSEVYSLLIDTYIKNPSEKHKLLNAIETVPCVRRKARWALRWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHCDFACLLYTKCKIKCPEERVKAIIQDAVAIEKQFITDALPVELIGMNSRLMCEYIEFCADRLLLALGCEKAYHSRNPFDWMDLISLQGKTNFFEKRVGEYAKSGVGGNIEDQVFSLEVDF 391
The following BLAST results are available for this feature:
BLAST of NO04G04660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28865.12.800e-19789.15ribonucleoside-diphosphate reductase small chain [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04660NO04G04660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04660.1NO04G04660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04660.1.cds1NO04G04660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04660.1.cds2NO04G04660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04660.1.cds3NO04G04660.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04660.1.cds4NO04G04660.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04660.1.cds5NO04G04660.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04660.1.cds6NO04G04660.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04660.1 ID=NO04G04660.1|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp
CGGGAAGTGGAAGTGTGTTGCAGAAGCCTTAGCACAAAGCTGGTCGACAA
GTCCTTATTCTTTCTTTTCTGCATTGCTGGCGTGGTTTAGGGGTCCACCG
TGTACAAAGAATACTCGCAGTGCGCTTGTACTGGGCCTGGTATTCATCTT
TTGTGTCAATTGGCAGCAAATAAGTGGTCGTTCGTAACCTTCTCGCTTCC
TCTGGCAGCAGGCACCAAGGCACACCCCGCGCTCTCCACTACACCACGCA
TGCACACACAACCACCTTCACCTCACGCACATCAGCACACGCCAATGTGC
GCAGTGCCCACGTCCGTTTCCTTGCATTTACTGACTCAGTGCCTTGGGGT
CTGAAGCGTTCCGGCCGCCCCTCATTTCATGCCTCCCGTCCCGCCTTCGC
ACGTCTGACTAAGTCCCCTGCACACACAACATACAGAACTCCCACTACCA
GTACCACCGGCTACCATGCCCCTCACCGAGCACACCAACGTGGCCCCAGT
GCCCGAGGACCTGGCTGCGACCATGGAGCAGAAATTGTCCCTGGCCAGCA
AGAGCGCCGCCGCCGCCCTGCCGGACGAAGAGCTCGTGCTTAAGCCTTCT
GAGATGAAGCTGCGTGAGCTAGCAGGCGAGATGGACAACGAGCTCCTCCT
AAAGGATAATCCGGGCCGCTATGTCATCTTCCCCATTCAGCACCAGGATA
TCTGGGACATGTACAAGCAAGCTGAGGCCTCTTTCTGGACGGCGGAGGAG
CTGGACCTGGCCCACGACAAGACTGACTGGGAGAAGCTTTCCGACAAGGA
GCGTCATTTCGTCTCGCACGTCCTCGCCTTCTTCGCCGCGTCCGATGGGA
TCGTTAACGAAAACCTGGCCTTGAACTTCTCCAACGAGATTCAGCTGCCG
GAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCATCGAGAACATCCACAG
CGAGGTATACTCCCTCCTCATCGACACGTACATCAAGAACGGTCAAGAGA
AGCACAAGCTCCTCAATGCCATTGATACTGTGCCTTGTGTCCGTCGGAAG
GCGCAGTGGGCCCTCAGGTGGTGCGACCGGAAGTACGCCTCTTTCGCCGA
GCGCCTGATTGCGTTTGCGGCCGTGGAAGGTATATTTTTCAGTGGGTCGT
TCTGCTCGATATTCTGGCTGAAGAAGAGGGGTTTGATGCCGGGGCTCTCC
TTCTCGAACGAGCTCATCTCCCGCGACGAGGGTTTGCACTGTGACTTCGC
CTGCCTCCTATACAGCAAGTGCAGCATCAAGTGCCCGGAGGAGCGTGTGG
TGGACATCATCAAGGACGCGGTGGCCATCGAGAAGGAATTCATCACCGAT
GCCCTGCCCGTGGAGCTGATTGGGATGAATAGCCGCCTCATGTGCGACTA
CATCGAGTTCTGCGCCGACCGGCTCCTTTTGTCGTTGGGCTGCTCCAAGG
CGTACCATACCCGGAACCCGTTTGACTGGATGGACCTCATCTCCTTGCAG
GGCAAGACCAACTTTTTCGAGAAGCGCGTGGGGGAGTACGCGAAAAGCGG
CGTCGGTGGAAATGTTGAGGACCAGGTTTTCTCTCTGGAGGCCGAGTTCT
AAACCTCCTTTCTTTCCTTGCTCCCCTCCCTCCCTCCCTCCCTCCCT
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protein sequence of NO04G04660.1

>NO04G04660.1-protein ID=NO04G04660.1-protein|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPLTEHTNVAPVPEDLAATMEQKLSLASKSAAAALPDEELVLKPSEMKLR
ELAGEMDNELLLKDNPGRYVIFPIQHQDIWDMYKQAEASFWTAEELDLAH
DKTDWEKLSDKERHFVSHVLAFFAASDGIVNENLALNFSNEIQLPEARCF
YGFQIAIENIHSEVYSLLIDTYIKNGQEKHKLLNAIDTVPCVRRKAQWAL
RWCDRKYASFAERLIAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNEL
ISRDEGLHCDFACLLYSKCSIKCPEERVVDIIKDAVAIEKEFITDALPVE
LIGMNSRLMCDYIEFCADRLLLSLGCSKAYHTRNPFDWMDLISLQGKTNF
FEKRVGEYAKSGVGGNVEDQVFSLEAEF*
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mRNA from alignment at chr4:1267552..1270278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04660.1 ID=NO04G04660.1|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at chr4:1267552..1270278- (Nannochloropsis oceanica)
CGGGAAGTGGAAGTGTGTTGCAGAAGCCTTAGCACAAAGCTGGTCGACAA
GTCCTTATTCTTTCTTTTCTGCATTGCTGGCGTGGTTTAGGGGTCCACCG
TGTACAAAGAATACTCGCAGTGCGCTTGTACTGGGCCTGGTATTCATCTT
TTGTGTCAATTGGCAGCAAATAAGTGGTCGTTCGTAACCTTCTCGCTTCC
TCTGGCAGCAGGCACCAAGGCACACCCCGCGCTCTCCACTACACCACGCA
TGCACACACAACCACCTTCACCTCACGCACATCAGCACACGCCAATGTGC
GCAGTGCCCACGTCCGTTTCCTTGCATTTACTGACTCAGTGCCTTGGGGT
CTGAAGCGTTCCGGCCGCCCCTCATTTCATGCCTCCCGTCCCGCCTTCGC
ACGTCTGACTAAGTCCCCTGCACACACAACATACAGAACTCCCACTACCA
GTACCACCGGCTACCATGCCCCTCACCGAGCACACCAACGTGGCCCCAGT
GCCCGAGGACCTGGCTGCGACCATGGAGCAGAAATTGTCCCTGGCCAGCA
AGAGCGCCGCCGCCGCCCTGCCGGACGAAGAGCTCGTGCTTAAGCCTTCT
GAGATGAAGCTGCGTGAGCTAGCAGGCGAGATGGACAACGAGCTCCTCCT
AAAGGATAATCCGGGCCGCTATGTCATCTTCCCCATTCAGCACCAGGATG
TACGTATTGACAGACGGAGGTGGTAGTGGGGGGGGGGGCTAATTGCCGTG
TGCCTTGTTTTCCCGCCCTCTTCTGCGGGTGTGTGTGTCTGCCTTAGGTC
CATCTTGCCCAGTATTGGCATTGGCAGCACAGCAACAACCTGGCAGGGCA
AGCTTCCTGCTGTGTTTACCGCTGTATCTGCAGTGTCTATTGCTCAAGTT
GTTTCCCGCCTTCTGTGGTCTGTGGAGGGAGGCTCGTGCCTCGGCATGCG
CAGCCTCCCTCCCTCCTCTCCATGCCTGCCGCGCCAGCACCATCATTTAT
GCGTACCTTCTCGACAGGAGGCAGGCAGCAAGTGTGTGATGAAATGGAGA
TGTATAGGTTCTGCTGCTCGCTTTCTGCTGCTTTCCTGCCCAATACTCTC
GGTCCCCACTTACCATCACTTCCCTCCTTCCCTCCCTCCCCTCCTCCCAC
CTTTCCCCCGGCACCACCACAGATCTGGGACATGTACAAGCAAGCTGAGG
CCTCTTTCTGGACGGCGGAGGAGCTGGACCTGGCCCACGACAAGACTGAC
TGGGAGAAGCTTTCCGACAAGGAGCGTCATTTCGTCTCGCACGTCCTCGC
CTTCTTCGCCGCGTCCGATGGGATCGTTAACGAAAACCTGGCCTTGAACT
TCTCCAACGAGATTCAGCTGCCGGTGCGTGCTACGGATCTATCGTTTGAT
TGAGTCATGACCCCACCCCCCTCCCTCTTTCTGTGTTGGCGTCTTCGTCG
TTGTCTCACTCCCACCTCCCCCTCCTTCCCTCCTTCCCGCGCTCCCCCCC
CACCTCGACTGCACAGGAGGCCCGCTGCTTCTACGGCTTCCAGATAGCCA
TCGAGAACATCCACAGCGAGGTATACTCCCTCCTCATCGACACGTACATC
AAGAACGGTCAAGAGAAGCACAAGCTCCTCAATGCCATTGATACTGTGCC
TTGTGTCCGTCGGAAGGCGCAGTGGGCCCTCAGGTGGTGCGACCGGAAGT
ACGCCTCTTTCGCCGAGCGCCTGATTGCGTTTGCGGCCGTGGAAGGTATA
TTTTTCAGTGGGTCGTTCTGCTCGATATTCTGGCTGAAGAAGAGGGGTTT
GATGCCGGTAGGTGGGGAGTGGGGAGGGGAGGGGGAAGGGAGGGAGAACA
GTAAGGAAGGAGGGAAGGCGGGAAGGAGGGAGGGCTGAATTGACGACCTT
TTTTACCGAGCTGTCTTGTTTTCAATGTATGTATGAATCTAAACCTTTCC
TTTCTCCCCTCCCCCCTCCCTTCCTACCTCAGGGGCTCTCCTTCTCGAAC
GAGCTCATCTCCCGCGACGAGGGTTTGCACTGTGACTTCGCCTGCCTCCT
ATACAGCAAGTGCAGCATCAAGTGCCCGGAGGAGCGTGTGGTGGACATCA
TCAAGGACGCGGTGGCCATCGAGAAGGAATTCATCACCGATGCCCTGCCC
GTGGAGCTGATTGGGATGAATAGGTGAGTCCTGTCTCCCTCCCTCCCTCC
CTTTCTCTTTCCCGCCCTCCCTCCCACCCTAAGGGTTTACCGAGGAGGCT
GCCCCTGCCGTATAGATCACTTTTCCTCCTCACCCTCCCTCTCTCCCTCC
CTCCCTCCTTTATAGCCGCCTCATGTGCGACTACATCGAGTTCTGCGCCG
ACCGGCTCCTTTTGTCGTTGGGCTGCTCCAAGGCGTACCATACCCGGAAC
CCGTTTGACTGGATGGACCTCATCTCCTTGCAGGTAGGAAGGGAGGGAGG
GAGGAATGGAAAGAAGGGAGGGCGTGAAGGAGTGCCTGTTTCGTATTCCA
TACTGCCGAACTCCGAGGCAACTTACCCACCACCCCGTTTCTCTTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCCCACAGGGCAAGACCAACTTTTTCGA
GAAGCGCGTGGGGGAGTACGCGAAAAGCGGCGTCGGTGGAAATGTTGAGG
ACCAGGTTTTCTCTCTGGAGGCCGAGTTCTAAACCTCCTTTCTTTCCTTG
CTCCCCTCCCTCCCTCCCTCCCTCCCT
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Coding sequence (CDS) from alignment at chr4:1267552..1270278-

>NO04G04660.1 ID=NO04G04660.1|Name=NO04G04660.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr4:1267552..1270278- (Nannochloropsis oceanica)
ATGCCCCTCACCGAGCACACCAACGTGGCCCCAGTGCCCGAGGACCTGGC
TGCGACCATGGAGCAGAAATTGTCCCTGGCCAGCAAGAGCGCCGCCGCCG
CCCTGCCGGACGAAGAGCTCGTGCTTAAGCCTTCTGAGATGAAGCTGCGT
GAGCTAGCAGGCGAGATGGACAACGAGCTCCTCCTAAAGGATAATCCGGG
CCGCTATGTCATCTTCCCCATTCAGCACCAGGATATCTGGGACATGTACA
AGCAAGCTGAGGCCTCTTTCTGGACGGCGGAGGAGCTGGACCTGGCCCAC
GACAAGACTGACTGGGAGAAGCTTTCCGACAAGGAGCGTCATTTCGTCTC
GCACGTCCTCGCCTTCTTCGCCGCGTCCGATGGGATCGTTAACGAAAACC
TGGCCTTGAACTTCTCCAACGAGATTCAGCTGCCGGAGGCCCGCTGCTTC
TACGGCTTCCAGATAGCCATCGAGAACATCCACAGCGAGGTATACTCCCT
CCTCATCGACACGTACATCAAGAACGGTCAAGAGAAGCACAAGCTCCTCA
ATGCCATTGATACTGTGCCTTGTGTCCGTCGGAAGGCGCAGTGGGCCCTC
AGGTGGTGCGACCGGAAGTACGCCTCTTTCGCCGAGCGCCTGATTGCGTT
TGCGGCCGTGGAAGGTATATTTTTCAGTGGGTCGTTCTGCTCGATATTCT
GGCTGAAGAAGAGGGGTTTGATGCCGGGGCTCTCCTTCTCGAACGAGCTC
ATCTCCCGCGACGAGGGTTTGCACTGTGACTTCGCCTGCCTCCTATACAG
CAAGTGCAGCATCAAGTGCCCGGAGGAGCGTGTGGTGGACATCATCAAGG
ACGCGGTGGCCATCGAGAAGGAATTCATCACCGATGCCCTGCCCGTGGAG
CTGATTGGGATGAATAGCCGCCTCATGTGCGACTACATCGAGTTCTGCGC
CGACCGGCTCCTTTTGTCGTTGGGCTGCTCCAAGGCGTACCATACCCGGA
ACCCGTTTGACTGGATGGACCTCATCTCCTTGCAGGGCAAGACCAACTTT
TTCGAGAAGCGCGTGGGGGAGTACGCGAAAAGCGGCGTCGGTGGAAATGT
TGAGGACCAGGTTTTCTCTCTGGAGGCCGAGTTCTAA
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Synonyms
Publications